Guide to the Human Genome
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Name: LOC100290892 Sequence: fasta or formatted (165aa) NCBI GI: 239748362
Description:

PREDICTED: hypothetical protein XP_002346639

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5          9           2
 C cysteine            3.6          6           1
 D aspartate           3.6          6           1
 E glutamate           3.6          6           1
 F phenylalanine       3.6          6           1
 G glycine             8.5         14           1
 H histidine           5.5          9           2
 I isoleucine          4.8          8           4
 K lysine              1.2          2           1
 L leucine            13.9         23           3
 M methionine          5.5          9           2
 N asparagine          3.0          5           1
 P proline             9.7         16           2
 Q glutamine           4.8          8           1
 R arginine            4.8          8           2
 S serine              5.5          9           2
 T threonine           3.0          5           1
 V valine              7.3         12           2
 W tryptophan          1.8          3           1
 Y tyrosine            0.6          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346639 
NVL                   0.025   nuclear VCP-like isoform 2 
NVL                   0.025   nuclear VCP-like isoform 1 
LOC100293198          0.022   PREDICTED: hypothetical protein 
LOC100290441          0.022   PREDICTED: hypothetical protein XP_002346707 
LOC100288152          0.022   PREDICTED: hypothetical protein XP_002342538 
ENG                   0.018   endoglin isoform 1 precursor 
ENG                   0.018   endoglin isoform 2 precursor 
LTBP3                 0.009   latent transforming growth factor beta binding prot...
LTBP3                 0.009   latent transforming growth factor beta binding prote...
TTC31                 0.009   tetratricopeptide repeat domain 31 
EPHA10                0.009   EPH receptor A10 isofom 3 
ZSCAN10               0.009   zinc finger and SCAN domain containing 10 
LOC100293694          0.006   PREDICTED: hypothetical protein 
MST1R                 0.006   macrophage stimulating 1 receptor precursor 
HJURP                 0.006   Holliday junction recognition protein 
SEMA4A                0.006   semaphorin B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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