Search of human proteins with 239753937

Search of human proteins with 239753937

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239753937 PREDICTED: similar to hCG2036828 [Homo sapiens]
         (275 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753937 PREDICTED: similar to hCG2036828 [Homo sapiens]          567   e-162
gi|54633319 PDZ domain-containing guanine nucleotide exchange fa...   172   2e-43
gi|155030206 Rap guanine nucleotide exchange factor (GEF) 4 isof...    43   3e-04
gi|155030204 Rap guanine nucleotide exchange factor (GEF) 4 isof...    43   3e-04
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]         40   0.002
gi|136255216 proline-rich transmembrane protein 3 [Homo sapiens]       40   0.003
gi|148747862 Rap guanine nucleotide exchange factor 3 isoform b ...    39   0.004
gi|20070215 Rap guanine nucleotide exchange factor 3 isoform b [...    39   0.004
gi|148747859 Rap guanine nucleotide exchange factor 3 isoform a ...    39   0.004
gi|208022661 hypothetical protein LOC57701 [Homo sapiens]              38   0.008
gi|194272140 dendrin [Homo sapiens]                                    37   0.014
gi|145199237 transcription elongation factor B polypeptide 3 bin...    37   0.014
gi|55741677 SET domain containing 1A [Homo sapiens]                    37   0.024
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]         37   0.024
gi|17999524 proacrosin binding protein sp32 precursor [Homo sapi...    36   0.042
gi|55749459 transcription elongation factor A (SII)-like 4 [Homo...    35   0.054
gi|55749442 transcription elongation factor A (SII)-like 4 [Homo...    35   0.054
gi|65505873 transcription elongation factor A (SII)-like 4 [Homo...    35   0.054
gi|55749451 transcription elongation factor A (SII)-like 4 [Homo...    35   0.054
gi|239747641 PREDICTED: hypothetical protein XP_002347916 [Homo ...    35   0.071
gi|224282119 splicing factor, arginine/serine-rich 14 [Homo sapi...    35   0.071
gi|224282117 splicing factor, arginine/serine-rich 14 [Homo sapi...    35   0.071
gi|148762940 DVL-binding protein DAPLE [Homo sapiens]                  35   0.071
gi|169166960 PREDICTED: hypothetical protein [Homo sapiens]            34   0.12 
gi|12711676 UPF3 regulator of nonsense transcripts homolog A iso...    34   0.12 
gi|18375525 UPF3 regulator of nonsense transcripts homolog A iso...    34   0.12 
gi|32490572 erythrocyte membrane protein band 4.1-like 3 [Homo s...    34   0.16 
gi|156142199 euchromatic histone-lysine N-methyltransferase 2 is...    34   0.16 
gi|22550104 ubiquitin specific protease 32 [Homo sapiens]              34   0.16 
gi|31077092 neurogenin 2 [Homo sapiens]                                34   0.16 

>gi|239753937 PREDICTED: similar to hCG2036828 [Homo sapiens]
          Length = 275

 Score =  567 bits (1462), Expect = e-162
 Identities = 275/275 (100%), Positives = 275/275 (100%)

Query: 1   MRRPPTRPHAVTHSSPWLQHKATSPRGRFLPEERLRRPEKAQEEEEAEEEEGNRRFPNTL 60
           MRRPPTRPHAVTHSSPWLQHKATSPRGRFLPEERLRRPEKAQEEEEAEEEEGNRRFPNTL
Sbjct: 1   MRRPPTRPHAVTHSSPWLQHKATSPRGRFLPEERLRRPEKAQEEEEAEEEEGNRRFPNTL 60

Query: 61  SEGAVRGSRLSALGRPRRESEPGLSAAPSSPSSAPRRRGTKLPRATGPEGCSPGRDLEIV 120
           SEGAVRGSRLSALGRPRRESEPGLSAAPSSPSSAPRRRGTKLPRATGPEGCSPGRDLEIV
Sbjct: 61  SEGAVRGSRLSALGRPRRESEPGLSAAPSSPSSAPRRRGTKLPRATGPEGCSPGRDLEIV 120

Query: 121 YSYLHGMEALSNLREHQLRLMCETVRYERHEANEVLYYPDDIGTCWYILLSGSVFIKESM 180
           YSYLHGMEALSNLREHQLRLMCETVRYERHEANEVLYYPDDIGTCWYILLSGSVFIKESM
Sbjct: 121 YSYLHGMEALSNLREHQLRLMCETVRYERHEANEVLYYPDDIGTCWYILLSGSVFIKESM 180

Query: 181 FLPRSSFGKRSAGSFRRGCECIVLEPSEMIVVDYMDENEEYFQRQASHRQSRRRFRKINQ 240
           FLPRSSFGKRSAGSFRRGCECIVLEPSEMIVVDYMDENEEYFQRQASHRQSRRRFRKINQ
Sbjct: 181 FLPRSSFGKRSAGSFRRGCECIVLEPSEMIVVDYMDENEEYFQRQASHRQSRRRFRKINQ 240

Query: 241 KGERQTIIDTVDPYPMGKPPLPRGYHTECTKSQVL 275
           KGERQTIIDTVDPYPMGKPPLPRGYHTECTKSQVL
Sbjct: 241 KGERQTIIDTVDPYPMGKPPLPRGYHTECTKSQVL 275


>gi|54633319 PDZ domain-containing guanine nucleotide exchange
           factor I [Homo sapiens]
          Length = 1601

 Score =  172 bits (437), Expect = 2e-43
 Identities = 88/138 (63%), Positives = 103/138 (74%), Gaps = 3/138 (2%)

Query: 116 DLEIVYSYLHGMEALSNLREHQLRLMCETVRYERHEANEVLYYPDDIGTCWYILLSGSVF 175
           DL  +YSYLHGME LSNLREHQLRLM    RYER+  N+VL+  + I  CWYILLSGSV 
Sbjct: 24  DLNTIYSYLHGMEILSNLREHQLRLMSARARYERYSGNQVLFCSETIARCWYILLSGSVL 83

Query: 176 IKESMFLPRSSFGKRSAGSFRRGCECIVLEPSEMIVVDYMDENEE-YFQRQASHRQSRRR 234
           +K SM LP  SFGK+  G  +RGC+C+VLEPSEMIVV+   +NE+   QR+   RQSRRR
Sbjct: 84  VKGSMVLPPCSFGKQFGG--KRGCDCLVLEPSEMIVVENAKDNEDSILQREIPARQSRRR 141

Query: 235 FRKINQKGERQTIIDTVD 252
           FRKIN KGERQTI D V+
Sbjct: 142 FRKINYKGERQTITDDVE 159



 Score = 31.2 bits (69), Expect = 1.0
 Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 8/80 (10%)

Query: 116 DLEIVYSYLHGMEALSNLREHQLRLMCETVRYE-RHEANEVLYYPDDIGTCWYILLSGSV 174
           D+E +  ++H + A +N+     R +C  + +E   +A  ++         WY++L+G+V
Sbjct: 267 DIEQLLEFMHQLPAFANMTMSVRRELCSVMIFEVVEQAGAIILEDGQELDSWYVILNGTV 326

Query: 175 FIK------ESMFLPRSSFG 188
            I       E++F+  +SFG
Sbjct: 327 EISHPDGKVENLFM-GNSFG 345


>gi|155030206 Rap guanine nucleotide exchange factor (GEF) 4 isoform
           b [Homo sapiens]
          Length = 867

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 108 PEGCSPGRDLEIVYSYLHGMEALSNLREHQLRLMCETVRYERH-EANEVLYYPDDIGTCW 166
           P G     DLEI+Y  L  ++ALS+L     R +   + +E H +   VL+   + GT W
Sbjct: 191 PPGQRTVDDLEIIYEELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSW 250

Query: 167 YILLSGSV 174
           YI+L GSV
Sbjct: 251 YIILKGSV 258


>gi|155030204 Rap guanine nucleotide exchange factor (GEF) 4 isoform
           a [Homo sapiens]
          Length = 1011

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 12/113 (10%)

Query: 116 DLEIVYSYLHGMEALSNLREHQLRLMCETVRYERHEANEVLYYPDDIGTCWYILLSGSVF 175
           D++I+++ L  ++A      + L  +C    YE  E    L+   DIGT WY +L+GS+ 
Sbjct: 30  DVDIIFTRLKEVKAFEKFHPNLLHQICLCGYYENLEKGITLFRQGDIGTNWYAVLAGSLD 89

Query: 176 IKESMFLPR------------SSFGKRSAGSFRRGCECIVLEPSEMIVVDYMD 216
           +K S                 ++FG+    +  R    +  E SE++ ++  D
Sbjct: 90  VKVSETSSHQDAVTICTLGIGTAFGESILDNTPRHATIVTRESSELLRIEQKD 142



 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 26/68 (38%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 108 PEGCSPGRDLEIVYSYLHGMEALSNLREHQLRLMCETVRYERH-EANEVLYYPDDIGTCW 166
           P G     DLEI+Y  L  ++ALS+L     R +   + +E H +   VL+   + GT W
Sbjct: 335 PPGQRTVDDLEIIYEELLHIKALSHLSTTVKRELAGVLIFESHAKGGTVLFNQGEEGTSW 394

Query: 167 YILLSGSV 174
           YI+L GSV
Sbjct: 395 YIILKGSV 402


>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
          Length = 1312

 Score = 40.0 bits (92), Expect = 0.002
 Identities = 31/107 (28%), Positives = 40/107 (37%), Gaps = 4/107 (3%)

Query: 4    PPTRPHAVTHSSPWLQHKATSPRGRFLPEERLRRP--EKAQEEEEAEEEEGNRRFPNTLS 61
            PP  P A+T  S  +     +P   FLPEE           EEEE EEEE          
Sbjct: 983  PP--PPALTPDSQTVDSSCKTPEVSFLPEEATEEAGVRGGAEEEEEEEEEEEEEEEEEEQ 1040

Query: 62   EGAVRGSRLSALGRPRRESEPGLSAAPSSPSSAPRRRGTKLPRATGP 108
            + A   +  +A   P      G +A  S     P  R ++LP    P
Sbjct: 1041 QPATTTATSTAAAAPSTAPSAGSTAGDSGAEDGPASRVSQLPTLPPP 1087



 Score = 30.8 bits (68), Expect = 1.3
 Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 10/91 (10%)

Query: 8   PHAVTHSSPWLQHKATSPRGRFLPEERLRRPEKAQEEEE-AEEEEGNRRFPNTLSE--GA 64
           P   T S+P      +S  G   PEE     E+ +EEEE  EEEEG  +  + +SE    
Sbjct: 250 PFEPTGSNP------SSSAGTPSPEEEEEEEEEEEEEEEDEEEEEGLSQSISRISETLAG 303

Query: 65  VRGSRLSALGRPRRESEPGLSAAPSSPSSAP 95
           +      +   P  ES P   A P+ P+ AP
Sbjct: 304 IYDDNSLSQDFPGDES-PRPDAQPTQPTPAP 333


>gi|136255216 proline-rich transmembrane protein 3 [Homo sapiens]
          Length = 981

 Score = 39.7 bits (91), Expect = 0.003
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 5/89 (5%)

Query: 20  HKATSPRGRFLPEERLRRPEKAQEEEEAEEEEGNRRFPNTLSEGAVRGSRLSALGRPRRE 79
           ++  SP G   P+E    P + Q    A   +     P+T   G +R +   ALG+P   
Sbjct: 379 NRTESPMGALQPDEAEEWPGRPQSHPPAPPVQA----PSTSRRGLIRVTTQRALGQPP-P 433

Query: 80  SEPGLSAAPSSPSSAPRRRGTKLPRATGP 108
            EP  S+  S+P+S+P    T  P   GP
Sbjct: 434 PEPTASSMASAPASSPPANATAPPLRWGP 462


>gi|148747862 Rap guanine nucleotide exchange factor 3 isoform b
           [Homo sapiens]
          Length = 881

 Score = 39.3 bits (90), Expect = 0.004
 Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 108 PEGCSPGRDLEIVYSYLHGMEALSNLREHQLRLMCETVRYERH-EANEVLYYPDDIGTCW 166
           P G     +L++++  L  ++A+++L     R +   + +E H +A  VL+   D GT W
Sbjct: 182 PPGQRTDEELDLIFEELLHIKAVAHLSNSVKRELAAVLLFEPHSKAGTVLFSQGDKGTSW 241

Query: 167 YILLSGSV 174
           YI+  GSV
Sbjct: 242 YIIWKGSV 249


>gi|20070215 Rap guanine nucleotide exchange factor 3 isoform b
           [Homo sapiens]
          Length = 881

 Score = 39.3 bits (90), Expect = 0.004
 Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 108 PEGCSPGRDLEIVYSYLHGMEALSNLREHQLRLMCETVRYERH-EANEVLYYPDDIGTCW 166
           P G     +L++++  L  ++A+++L     R +   + +E H +A  VL+   D GT W
Sbjct: 182 PPGQRTDEELDLIFEELLHIKAVAHLSNSVKRELAAVLLFEPHSKAGTVLFSQGDKGTSW 241

Query: 167 YILLSGSV 174
           YI+  GSV
Sbjct: 242 YIIWKGSV 249


>gi|148747859 Rap guanine nucleotide exchange factor 3 isoform a
           [Homo sapiens]
          Length = 923

 Score = 39.3 bits (90), Expect = 0.004
 Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 1/68 (1%)

Query: 108 PEGCSPGRDLEIVYSYLHGMEALSNLREHQLRLMCETVRYERH-EANEVLYYPDDIGTCW 166
           P G     +L++++  L  ++A+++L     R +   + +E H +A  VL+   D GT W
Sbjct: 224 PPGQRTDEELDLIFEELLHIKAVAHLSNSVKRELAAVLLFEPHSKAGTVLFSQGDKGTSW 283

Query: 167 YILLSGSV 174
           YI+  GSV
Sbjct: 284 YIIWKGSV 291


>gi|208022661 hypothetical protein LOC57701 [Homo sapiens]
          Length = 1334

 Score = 38.1 bits (87), Expect = 0.008
 Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 10/130 (7%)

Query: 5   PTRPHAVTHSSPWLQHKATSPRGRFLPEERLRRPEKAQEEEEAEEEEGNRRFPNTLSEGA 64
           P  P +  + SP  Q K+    G   P    R P  + ++      +G+ R P       
Sbjct: 607 PCLPESYPYGSP--QEKSLDKAGSESPHPGRRTPGNSSKKPS----QGSGRRPGDPGSTP 660

Query: 65  VRGSRLSALGRPRRESEPGLSAAPSSPSSAPRRRGTKLPRATGPEGCSPGRDLEIVYSYL 124
           +R  RL+ALG+ +   E  L    S  +  P R GT+  R  G  G S G  +  ++  L
Sbjct: 661 LR-DRLAALGKLKTGPEGALG---SEKNGVPARPGTEKTRGPGKSGESAGDMVPSIHRPL 716

Query: 125 HGMEALSNLR 134
             +EA   +R
Sbjct: 717 EQLEAKGGIR 726


>gi|194272140 dendrin [Homo sapiens]
          Length = 711

 Score = 37.4 bits (85), Expect = 0.014
 Identities = 41/113 (36%), Positives = 48/113 (42%), Gaps = 21/113 (18%)

Query: 4   PPTRPHAVTHSSPWLQHKATSPRGRFLPEERLRRPEK---AQEEEEAEEEEGNRRFPNTL 60
           PP RP A    S  LQ +AT+ R   L E R R  EK   A +E EA+E E  RR     
Sbjct: 81  PPRRPWA----SRVLQ-EATNWRAGPLAEVRAREQEKRKAASQEREAKETERKRR----- 130

Query: 61  SEGAVRGSRLSALGRPRRESEPGLSAAPSSPSSAPRRRGTKLPRATGPEGCSP 113
                 G+R S  GRPR E       A  +   AP R     P    P G +P
Sbjct: 131 ---KAGGARRSPPGRPRPEPRNAPRVAQLAGLPAPLR-----PERLAPVGRAP 175


>gi|145199237 transcription elongation factor B polypeptide 3
           binding protein 1 [Homo sapiens]
          Length = 1221

 Score = 37.4 bits (85), Expect = 0.014
 Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 19/95 (20%)

Query: 23  TSPRGRFLPEERLRR----PEKAQEEEEAEEEEGNRRFPNTLSEGAVRGSRLSALGRPRR 78
           T  +GR  P E+ R     P+ +    +AE  EG ++ P++ +  A  G      GRP R
Sbjct: 399 TKDKGRGRPVEKPRADKKGPQASSPRRKAERPEGTKKKPSSATPVATSGK-----GRPDR 453

Query: 79  ----------ESEPGLSAAPSSPSSAPRRRGTKLP 103
                     +S P     P  P   P R+ TK P
Sbjct: 454 PARRPSPTSGDSRPAAGRGPPRPLQLPDRKSTKAP 488


>gi|55741677 SET domain containing 1A [Homo sapiens]
          Length = 1707

 Score = 36.6 bits (83), Expect = 0.024
 Identities = 21/62 (33%), Positives = 33/62 (53%)

Query: 21   KATSPRGRFLPEERLRRPEKAQEEEEAEEEEGNRRFPNTLSEGAVRGSRLSALGRPRRES 80
            +A  P+ + L ++R    E+ +EE E EEEE +    ++  EGA+R   L +  R RR  
Sbjct: 1345 EAEEPKPQQLQQQREEGEEEGEEEGEEEEEESSDSSSSSDGEGALRRRSLRSHARRRRPP 1404

Query: 81   EP 82
             P
Sbjct: 1405 PP 1406


>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
          Length = 904

 Score = 36.6 bits (83), Expect = 0.024
 Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 14/113 (12%)

Query: 2   RRPPTRPHAVTHSSPW----LQHKATSPRGRFLPEERLRRPEKAQEEEEAEEEEGNRRFP 57
           R PP +P   T S P     L   A+ PR R  P      P K +     ++    R+  
Sbjct: 368 RSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPATPPPKTRHSPTPQQSNRTRKSR 427

Query: 58  NTLSEGAVRGSRLSALGRPRRESEPGLSAAPSSPSSAPRRRGTKLPRATGPEG 110
            ++S G   G      G  +RE          SPS AP+ R  +L  +   +G
Sbjct: 428 VSVSPGRTSGKVTKHKGTEKRE----------SPSPAPKPRKVELSESEEDKG 470



 Score = 31.2 bits (69), Expect = 1.0
 Identities = 23/95 (24%), Positives = 37/95 (38%)

Query: 15  SPWLQHKATSPRGRFLPEERLRRPEKAQEEEEAEEEEGNRRFPNTLSEGAVRGSRLSALG 74
           S +L+ K    + R + +E+L   +K  E+++  ++E                 R S   
Sbjct: 121 SAFLELKKEEIKQRQIEQEKLASMKKQDEDKDKRDKEEKESSREKRERSRSPRRRKSRSP 180

Query: 75  RPRRESEPGLSAAPSSPSSAPRRRGTKLPRATGPE 109
            PRR S P       S S +PR R      +  PE
Sbjct: 181 SPRRRSSPVRRERKRSHSRSPRHRTKSRSPSPAPE 215



 Score = 29.3 bits (64), Expect = 3.9
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 3/84 (3%)

Query: 25  PRGRFLPEERLRRPEKAQEEEEAEEEEGNRRFPNTLSEGAVRGSRLSALGRPRRESEPGL 84
           P+   +PE +   PEK  ++E+ +E+   R    + S    R SR  +  RPRR      
Sbjct: 248 PKPEPIPEPKEPSPEKNSKKEKEKEKTRPRSRSRSKSRSRTR-SRSPSHTRPRRRHRSRS 306

Query: 85  SAAPSSPSSAPRRRGTKLPRATGP 108
            +       +PRRR +  PR   P
Sbjct: 307 RSYSPRRRPSPRRRPS--PRRRTP 328


>gi|17999524 proacrosin binding protein sp32 precursor [Homo
           sapiens]
          Length = 543

 Score = 35.8 bits (81), Expect = 0.042
 Identities = 27/80 (33%), Positives = 37/80 (46%), Gaps = 3/80 (3%)

Query: 19  QHKATSPRGRFLPEERLRRPEKAQEEEEAEEEEGNRRFPNTLSEGAVRGSRLSALGRPRR 78
           Q +    R     E +    +K +E+EE +EEEG +       EG    S+L     P+ 
Sbjct: 197 QEQGVEHRQEPTQEHKQEEGQKQEEQEEEQEEEGKQEEGQGTKEGREAVSQLQTDSEPKF 256

Query: 79  ESEPGLSAAPSSPSSAPRRR 98
            SE  LS+ PS  S APR R
Sbjct: 257 HSE-SLSSNPS--SFAPRVR 273


>gi|55749459 transcription elongation factor A (SII)-like 4 [Homo
           sapiens]
          Length = 215

 Score = 35.4 bits (80), Expect = 0.054
 Identities = 19/61 (31%), Positives = 30/61 (49%)

Query: 23  TSPRGRFLPEERLRRPEKAQEEEEAEEEEGNRRFPNTLSEGAVRGSRLSALGRPRRESEP 82
           T  +G+   EE L+   K + E EA+E +  R   + +  G+ R  +    G+P  E EP
Sbjct: 47  TENKGKTGDEEMLKDKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEP 106

Query: 83  G 83
           G
Sbjct: 107 G 107


>gi|55749442 transcription elongation factor A (SII)-like 4 [Homo
           sapiens]
          Length = 215

 Score = 35.4 bits (80), Expect = 0.054
 Identities = 19/61 (31%), Positives = 30/61 (49%)

Query: 23  TSPRGRFLPEERLRRPEKAQEEEEAEEEEGNRRFPNTLSEGAVRGSRLSALGRPRRESEP 82
           T  +G+   EE L+   K + E EA+E +  R   + +  G+ R  +    G+P  E EP
Sbjct: 47  TENKGKTGDEEMLKDKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEP 106

Query: 83  G 83
           G
Sbjct: 107 G 107


>gi|65505873 transcription elongation factor A (SII)-like 4 [Homo
           sapiens]
          Length = 215

 Score = 35.4 bits (80), Expect = 0.054
 Identities = 19/61 (31%), Positives = 30/61 (49%)

Query: 23  TSPRGRFLPEERLRRPEKAQEEEEAEEEEGNRRFPNTLSEGAVRGSRLSALGRPRRESEP 82
           T  +G+   EE L+   K + E EA+E +  R   + +  G+ R  +    G+P  E EP
Sbjct: 47  TENKGKTGDEEMLKDKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEP 106

Query: 83  G 83
           G
Sbjct: 107 G 107


>gi|55749451 transcription elongation factor A (SII)-like 4 [Homo
           sapiens]
          Length = 215

 Score = 35.4 bits (80), Expect = 0.054
 Identities = 19/61 (31%), Positives = 30/61 (49%)

Query: 23  TSPRGRFLPEERLRRPEKAQEEEEAEEEEGNRRFPNTLSEGAVRGSRLSALGRPRRESEP 82
           T  +G+   EE L+   K + E EA+E +  R   + +  G+ R  +    G+P  E EP
Sbjct: 47  TENKGKTGDEEMLKDKGKPESEGEAKEGKSEREGESEMEGGSEREGKPEIEGKPESEGEP 106

Query: 83  G 83
           G
Sbjct: 107 G 107


>gi|239747641 PREDICTED: hypothetical protein XP_002347916 [Homo
           sapiens]
          Length = 193

 Score = 35.0 bits (79), Expect = 0.071
 Identities = 33/111 (29%), Positives = 42/111 (37%), Gaps = 27/111 (24%)

Query: 26  RGRFLPEERLRRPEKAQEEEEAE-------------------------EEEGNRRFPNTL 60
           RG+ +PE R R+P  A   EE                           E  G RR P   
Sbjct: 78  RGQHVPELRSRKPGPAARTEEGGDVTGRPWQPPLLPPPGVPTPGNRGGERRGERRAPPRP 137

Query: 61  SEGAVRGSRLSALGRPRRESE-PGLSAAPSSPSSAPRRRGTKLPRATGPEG 110
           + GA RGS ++A GR R E+E P L A      + P  + T  P      G
Sbjct: 138 A-GAPRGSPMAARGRARGEAEPPALGAGACDSRNQPDSQRTAPPGGGAERG 187


>gi|224282119 splicing factor, arginine/serine-rich 14 [Homo
           sapiens]
          Length = 1082

 Score = 35.0 bits (79), Expect = 0.071
 Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 32  EERLRRPEKAQEEEEAEEEEGNRRFPNTLSEGAVRGSRLSALGRPRRESEPGLSAAP--- 88
           E  L  PE   EEE+ ++E+G    P     G   GS   A G P   +E  L+ AP   
Sbjct: 882 EAELESPEVMPEEEDEDDEDGGEEAPAPGGAGKSEGS-TPADGLPGEAAEDDLAGAPALS 940

Query: 89  --SSPSSAPRRR 98
             SS +  PR+R
Sbjct: 941 QASSGTCFPRKR 952


>gi|224282117 splicing factor, arginine/serine-rich 14 [Homo
           sapiens]
          Length = 1082

 Score = 35.0 bits (79), Expect = 0.071
 Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 32  EERLRRPEKAQEEEEAEEEEGNRRFPNTLSEGAVRGSRLSALGRPRRESEPGLSAAP--- 88
           E  L  PE   EEE+ ++E+G    P     G   GS   A G P   +E  L+ AP   
Sbjct: 882 EAELESPEVMPEEEDEDDEDGGEEAPAPGGAGKSEGS-TPADGLPGEAAEDDLAGAPALS 940

Query: 89  --SSPSSAPRRR 98
             SS +  PR+R
Sbjct: 941 QASSGTCFPRKR 952


>gi|148762940 DVL-binding protein DAPLE [Homo sapiens]
          Length = 2028

 Score = 35.0 bits (79), Expect = 0.071
 Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 13/101 (12%)

Query: 15   SPWLQHKATSPRGRFLPEERLRRPEKAQEEEEAEEEEGNRRFPNTLSEGAVRGSRLSALG 74
            +P ++  A +  GR L   +  +P     E EA         P +++    +  +  +LG
Sbjct: 1730 APTVKMAAPTSEGRPLKPGQYVKPNFRLTEAEA---------PPSVAPRQAQPPQSLSLG 1780

Query: 75   RPRRESEPGLSAAPSSPSSAPRR----RGTKLPRATGPEGC 111
            RPR+   P  S AP+S S++  R        L RA+GPE C
Sbjct: 1781 RPRQAPVPPASHAPASRSASLSRAFSLASADLLRASGPEAC 1821


>gi|169166960 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 216

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 33/111 (29%), Positives = 45/111 (40%), Gaps = 10/111 (9%)

Query: 4   PPTRPHAVTHSSPWLQHKATSPRGRFLPEE-RLRRPEKAQEEEEAEEEEGNRRFPNTLSE 62
           PPTRP        W  ++      R   +  RLR       E E + +E + R   TL  
Sbjct: 61  PPTRPGRHRGGCAWTPNQRPEAAAREARDAGRLRAKRGGLREPERQRQEVSYRHRATLPP 120

Query: 63  GAVRGSRLS-ALG-RPRRESEP-------GLSAAPSSPSSAPRRRGTKLPR 104
             +R  R +  LG RPRR + P       G    P +PS A + RG +  R
Sbjct: 121 HPLRSRRSAPTLGARPRRPTWPPRAQLKRGDQQPPPTPSPASQPRGARRAR 171


>gi|12711676 UPF3 regulator of nonsense transcripts homolog A
           isoform hUpf3p [Homo sapiens]
          Length = 476

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 12/97 (12%)

Query: 19  QHKATSPRGRFLPEERLRRPEKAQEEEEAEEEEGNRRFPNTLSEGAVRGSRLSALGRPRR 78
           + K    R R L ++RLR  EK +  EE   E   ++  +   + A +  R+  L +P +
Sbjct: 233 EEKREERRRRELEKKRLREEEKRRRREE---ERCKKKETDKQKKIAEKEVRIKLLKKPEK 289

Query: 79  ESEPGLSAAPSSPSSAPRRRGTKLPRATG-PEGCSPG 114
             EP         +  P+ RG ++    G  E C+PG
Sbjct: 290 GEEP--------TTEKPKERGEEIDTGGGKQESCAPG 318


>gi|18375525 UPF3 regulator of nonsense transcripts homolog A
           isoform hUpf3pdelta [Homo sapiens]
          Length = 443

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 12/97 (12%)

Query: 19  QHKATSPRGRFLPEERLRRPEKAQEEEEAEEEEGNRRFPNTLSEGAVRGSRLSALGRPRR 78
           + K    R R L ++RLR  EK +  EE   E   ++  +   + A +  R+  L +P +
Sbjct: 200 EEKREERRRRELEKKRLREEEKRRRREE---ERCKKKETDKQKKIAEKEVRIKLLKKPEK 256

Query: 79  ESEPGLSAAPSSPSSAPRRRGTKLPRATG-PEGCSPG 114
             EP         +  P+ RG ++    G  E C+PG
Sbjct: 257 GEEP--------TTEKPKERGEEIDTGGGKQESCAPG 285


>gi|32490572 erythrocyte membrane protein band 4.1-like 3 [Homo
           sapiens]
          Length = 1087

 Score = 33.9 bits (76), Expect = 0.16
 Identities = 32/106 (30%), Positives = 41/106 (38%), Gaps = 20/106 (18%)

Query: 38  PEKAQEEEEAEEEEGNRRFPNTLSEGAVRGSRLS-ALGRPRRE-SEPGLSAAPSSPSSAP 95
           PEK  EEE  EEE+  R+        A+R    S  LG      S P    AP+SP+   
Sbjct: 470 PEKKAEEERDEEEDKRRKGEEVTPISAIRHEGKSPGLGTDSCPLSPPSTHCAPTSPTELR 529

Query: 96  RR--------------RGTKLPRATGPEGCSPGR----DLEIVYSY 123
           RR              R   LP     +   PGR    D ++ +SY
Sbjct: 530 RRCKENDCKLPGYEPSRAEHLPGEPALDSDGPGRPYLGDQDVAFSY 575


>gi|156142199 euchromatic histone-lysine N-methyltransferase 2
           isoform b [Homo sapiens]
          Length = 1176

 Score = 33.9 bits (76), Expect = 0.16
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 2/83 (2%)

Query: 30  LPEERLRRPEKAQEEEEAEEEEGNRRFPNTLSEGAVRGSRLSALGRPRRESEPGLSAAPS 89
           L E+     E+ +EEEE EEEE          E   +  R  + GR + + +    +   
Sbjct: 294 LTEQLSEEEEEEEEEEEEEEEEEEEEEEEEDEESGNQSDRSGSSGRRKAKKKWRKDSPWV 353

Query: 90  SPSSAPRRRGTKLPRATGPEGCS 112
            PS   +RR  + PRA  P G S
Sbjct: 354 KPSR--KRRKREPPRAKEPRGVS 374


>gi|22550104 ubiquitin specific protease 32 [Homo sapiens]
          Length = 1604

 Score = 33.9 bits (76), Expect = 0.16
 Identities = 30/97 (30%), Positives = 45/97 (46%), Gaps = 10/97 (10%)

Query: 19   QHKATSPRGRFLPEERL--RRPEKAQEEEEAEEEEG-NRRFPNTLSEGAVRGSRLSALGR 75
            QHK  +P+G  L E R+  R  +K   +  A EE+    + P++LS   +     S  G 
Sbjct: 1321 QHKPLTPQGDELSEPRILAREVKKVDAQSSAGEEDVLLSKSPSSLSANIIS----SPKGS 1376

Query: 76   PRRESEPGL---SAAPSSPSSAPRRRGTKLPRATGPE 109
            P    + G    S+  SSP+S+PR  G    R   P+
Sbjct: 1377 PSSSRKSGTSCPSSKNSSPNSSPRTLGRSKGRLRLPQ 1413


>gi|31077092 neurogenin 2 [Homo sapiens]
          Length = 272

 Score = 33.9 bits (76), Expect = 0.16
 Identities = 24/79 (30%), Positives = 32/79 (40%)

Query: 43  EEEEAEEEEGNRRFPNTLSEGAVRGSRLSALGRPRRESEPGLSAAPSSPSSAPRRRGTKL 102
           E  E +EEE       + S      + LS+      E EPG S        A   +G + 
Sbjct: 6   ETLELKEEEDVLVLLGSASPALAALTPLSSSADEEEEEEPGASGGARRQRGAEAGQGARG 65

Query: 103 PRATGPEGCSPGRDLEIVY 121
             A G EGC P R L +V+
Sbjct: 66  GVAAGAEGCRPARLLGLVH 84


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.134    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,751,391
Number of Sequences: 37866
Number of extensions: 664304
Number of successful extensions: 7146
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 261
Number of HSP's that attempted gapping in prelim test: 6468
Number of HSP's gapped (non-prelim): 734
length of query: 275
length of database: 18,247,518
effective HSP length: 101
effective length of query: 174
effective length of database: 14,423,052
effective search space: 2509611048
effective search space used: 2509611048
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.