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Search of human proteins with 239753797
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753797 PREDICTED: hypothetical protein [Homo sapiens]
(864 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753797 PREDICTED: hypothetical protein [Homo sapiens] 1787 0.0
gi|239748346 PREDICTED: hypothetical protein XP_002346641 [Homo ... 1770 0.0
gi|239742245 PREDICTED: hypothetical protein XP_002342464 [Homo ... 485 e-137
gi|18079216 CASK interacting protein 1 [Homo sapiens] 53 1e-06
gi|163965366 nascent polypeptide-associated complex alpha subuni... 53 1e-06
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 50 1e-05
gi|112734870 hypothetical protein LOC57648 [Homo sapiens] 50 1e-05
gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens] 48 4e-05
gi|66529407 tensin [Homo sapiens] 47 8e-05
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 47 1e-04
gi|4826998 splicing factor proline/glutamine rich (polypyrimidin... 45 2e-04
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 45 3e-04
gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo s... 45 3e-04
gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo s... 44 5e-04
gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo s... 44 5e-04
gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo s... 44 5e-04
gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens] 44 8e-04
gi|121114287 apoptosis-stimulating protein of p53, 1 [Homo sapiens] 44 8e-04
gi|71274172 ankyrin repeat domain 56 [Homo sapiens] 44 8e-04
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 43 0.001
gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens] 43 0.001
gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens] 43 0.001
gi|239757960 PREDICTED: hypothetical protein [Homo sapiens] 42 0.002
gi|160707881 formin 2 [Homo sapiens] 42 0.003
gi|55956910 meningioma 1 [Homo sapiens] 42 0.003
gi|41281612 zinc finger protein 828 [Homo sapiens] 42 0.003
gi|150170670 piccolo isoform 2 [Homo sapiens] 42 0.003
gi|150378539 piccolo isoform 1 [Homo sapiens] 42 0.003
gi|156416026 zinc finger protein 219 [Homo sapiens] 42 0.003
gi|156415998 zinc finger protein 219 [Homo sapiens] 42 0.003
>gi|239753797 PREDICTED: hypothetical protein [Homo sapiens]
Length = 864
Score = 1787 bits (4629), Expect = 0.0
Identities = 864/864 (100%), Positives = 864/864 (100%)
Query: 1 MAGPALQQSTARALACPLQDGDISGRGDCVQLQVDPEMGPSSPDVKGSCSVLGSTFLRKR 60
MAGPALQQSTARALACPLQDGDISGRGDCVQLQVDPEMGPSSPDVKGSCSVLGSTFLRKR
Sbjct: 1 MAGPALQQSTARALACPLQDGDISGRGDCVQLQVDPEMGPSSPDVKGSCSVLGSTFLRKR 60
Query: 61 PGSCCHPHPHRSPGRGGCGSLKQSCVSGPRGMAAVRLGHGLRPPGPRARQRFHRMATGWA 120
PGSCCHPHPHRSPGRGGCGSLKQSCVSGPRGMAAVRLGHGLRPPGPRARQRFHRMATGWA
Sbjct: 61 PGSCCHPHPHRSPGRGGCGSLKQSCVSGPRGMAAVRLGHGLRPPGPRARQRFHRMATGWA 120
Query: 121 VLGSPLGHPLRGCPPSPAAWPAPPAVGGGCTVTLRIRPSESSTGSSAEPSRRRPSMFFLP 180
VLGSPLGHPLRGCPPSPAAWPAPPAVGGGCTVTLRIRPSESSTGSSAEPSRRRPSMFFLP
Sbjct: 121 VLGSPLGHPLRGCPPSPAAWPAPPAVGGGCTVTLRIRPSESSTGSSAEPSRRRPSMFFLP 180
Query: 181 RLGVAACQGAGEVEQSKPGAVGPGGGGRGQAGPYPKLSPSDYSCMEHEQTVAVTSRPRGL 240
RLGVAACQGAGEVEQSKPGAVGPGGGGRGQAGPYPKLSPSDYSCMEHEQTVAVTSRPRGL
Sbjct: 181 RLGVAACQGAGEVEQSKPGAVGPGGGGRGQAGPYPKLSPSDYSCMEHEQTVAVTSRPRGL 240
Query: 241 SFHSISQQKLTQTAEPREPDADQRLPVTQNRKNPDHQTQRGRHWLSCTCGGEHENKELPL 300
SFHSISQQKLTQTAEPREPDADQRLPVTQNRKNPDHQTQRGRHWLSCTCGGEHENKELPL
Sbjct: 241 SFHSISQQKLTQTAEPREPDADQRLPVTQNRKNPDHQTQRGRHWLSCTCGGEHENKELPL 300
Query: 301 HQSTGRLLSCRGKTKSRPTVGDTAEQPPPHQNFLQLQQQPLSIPKGPSIHTRQQANPQGC 360
HQSTGRLLSCRGKTKSRPTVGDTAEQPPPHQNFLQLQQQPLSIPKGPSIHTRQQANPQGC
Sbjct: 301 HQSTGRLLSCRGKTKSRPTVGDTAEQPPPHQNFLQLQQQPLSIPKGPSIHTRQQANPQGC 360
Query: 361 PRPQAGDPAGPTKGLKCPCLPTRRGHSRSALQKNRLHCPTEGPTNQTPYIKGTEGNGPGL 420
PRPQAGDPAGPTKGLKCPCLPTRRGHSRSALQKNRLHCPTEGPTNQTPYIKGTEGNGPGL
Sbjct: 361 PRPQAGDPAGPTKGLKCPCLPTRRGHSRSALQKNRLHCPTEGPTNQTPYIKGTEGNGPGL 420
Query: 421 GPQEEPPAPLTSQPERAGAGGSHGPDQLTGNLLCAPGQVQAAAMAPTSSQETYSVPWGRA 480
GPQEEPPAPLTSQPERAGAGGSHGPDQLTGNLLCAPGQVQAAAMAPTSSQETYSVPWGRA
Sbjct: 421 GPQEEPPAPLTSQPERAGAGGSHGPDQLTGNLLCAPGQVQAAAMAPTSSQETYSVPWGRA 480
Query: 481 GAGGSRGPDQLTGNLLCAPGQVPAAAVAPTSSQETYSVPQGRSSSQRARGKTPSSPTLSP 540
GAGGSRGPDQLTGNLLCAPGQVPAAAVAPTSSQETYSVPQGRSSSQRARGKTPSSPTLSP
Sbjct: 481 GAGGSRGPDQLTGNLLCAPGQVPAAAVAPTSSQETYSVPQGRSSSQRARGKTPSSPTLSP 540
Query: 541 SRGSPLLLREPSLVTDSLEAHRVNTVAHADCTTHARDAGLELGCAYRVRQVQAQHSRGAD 600
SRGSPLLLREPSLVTDSLEAHRVNTVAHADCTTHARDAGLELGCAYRVRQVQAQHSRGAD
Sbjct: 541 SRGSPLLLREPSLVTDSLEAHRVNTVAHADCTTHARDAGLELGCAYRVRQVQAQHSRGAD 600
Query: 601 DAQAQPTRARQCSHTMDSSTHIYSPQRQGMGKPVARRMGLGMRVQGAAKATESLTWVIFR 660
DAQAQPTRARQCSHTMDSSTHIYSPQRQGMGKPVARRMGLGMRVQGAAKATESLTWVIFR
Sbjct: 601 DAQAQPTRARQCSHTMDSSTHIYSPQRQGMGKPVARRMGLGMRVQGAAKATESLTWVIFR 660
Query: 661 KSKDGRVHLASSSRLRLRRLLFPLSTQGCERHRSSPRRPPSAGVDVGLLLAQGRGVPAPA 720
KSKDGRVHLASSSRLRLRRLLFPLSTQGCERHRSSPRRPPSAGVDVGLLLAQGRGVPAPA
Sbjct: 661 KSKDGRVHLASSSRLRLRRLLFPLSTQGCERHRSSPRRPPSAGVDVGLLLAQGRGVPAPA 720
Query: 721 SRSCERDGRRLVEGKQDSAEHQSGPEPALPSLLSTKPPLAEDGRGVAGEVGPVDHTALLG 780
SRSCERDGRRLVEGKQDSAEHQSGPEPALPSLLSTKPPLAEDGRGVAGEVGPVDHTALLG
Sbjct: 721 SRSCERDGRRLVEGKQDSAEHQSGPEPALPSLLSTKPPLAEDGRGVAGEVGPVDHTALLG 780
Query: 781 RTAPGLPCRVALPPLSHRLLETGVQTLELPGRQGDRQRTSSSGSDKDRQCRLVGGAVDEP 840
RTAPGLPCRVALPPLSHRLLETGVQTLELPGRQGDRQRTSSSGSDKDRQCRLVGGAVDEP
Sbjct: 781 RTAPGLPCRVALPPLSHRLLETGVQTLELPGRQGDRQRTSSSGSDKDRQCRLVGGAVDEP 840
Query: 841 VLSLGSTVLAAPRPAPGRGDCGCH 864
VLSLGSTVLAAPRPAPGRGDCGCH
Sbjct: 841 VLSLGSTVLAAPRPAPGRGDCGCH 864
>gi|239748346 PREDICTED: hypothetical protein XP_002346641 [Homo
sapiens]
Length = 894
Score = 1770 bits (4584), Expect = 0.0
Identities = 863/894 (96%), Positives = 864/894 (96%), Gaps = 30/894 (3%)
Query: 1 MAGPALQQSTARALACPLQDGDISGRGDCVQLQVDPEMGPSSPDVKGSCSVLGSTFLRKR 60
MAGPALQQSTARALACPLQDGDISGRGDCVQLQVDPEMGPSSPDVKGSCSVLGSTFLRKR
Sbjct: 1 MAGPALQQSTARALACPLQDGDISGRGDCVQLQVDPEMGPSSPDVKGSCSVLGSTFLRKR 60
Query: 61 PGSCCHPHPHRSPGRGGCGSLKQSCVSGPRGMAAVRLGHGLRPPGPRARQRFHRMATGWA 120
PGSCCHPHPHRSPGRGGCGSLKQSCVSGPRGMAAVRLGHGLRPPGPRARQRFHRMATGWA
Sbjct: 61 PGSCCHPHPHRSPGRGGCGSLKQSCVSGPRGMAAVRLGHGLRPPGPRARQRFHRMATGWA 120
Query: 121 VLGSPLGHPLRGCPPSPAAWPAPPAVGGGCTVTLRIRPSESSTGSSAEPSRRRPSMFFLP 180
VLGSPLGHPL+GCPPSPAAWPAPPAVGGGCTVTLRIRPSESSTGSSAEPSRRRPSMFFLP
Sbjct: 121 VLGSPLGHPLQGCPPSPAAWPAPPAVGGGCTVTLRIRPSESSTGSSAEPSRRRPSMFFLP 180
Query: 181 RLGVAACQGAGEVEQSKPGAVGPGGGGRGQAGPYPKLSPSDYSCMEHEQTVAVTSRPRGL 240
RLGVAACQGAGEVEQSKPGAVGPGGGGRGQAGPYPKLSPSDYSCMEHEQTVAVTSRPRGL
Sbjct: 181 RLGVAACQGAGEVEQSKPGAVGPGGGGRGQAGPYPKLSPSDYSCMEHEQTVAVTSRPRGL 240
Query: 241 SFHSISQQKLTQTAEPREPDADQRLPVTQNRKNPDHQTQRGRHWLSCTCGGEHENKELPL 300
SFHSISQQKLTQTAEPREPDADQRLPVTQNRKNPDHQTQRGRHWLSCTCGGEHENKELPL
Sbjct: 241 SFHSISQQKLTQTAEPREPDADQRLPVTQNRKNPDHQTQRGRHWLSCTCGGEHENKELPL 300
Query: 301 HQSTGRLLSCRGKTKSRPTVGDTAEQPPPHQNFLQLQQQPLSIPKGPSIHTRQQANPQGC 360
HQSTGRLLSCRGKTKSRPTVGDTAEQPPPHQNFLQLQQQPLSIPKGPSIHTRQQANPQGC
Sbjct: 301 HQSTGRLLSCRGKTKSRPTVGDTAEQPPPHQNFLQLQQQPLSIPKGPSIHTRQQANPQGC 360
Query: 361 PRPQAGDPAGPTKGLKCPCLPTRRGHSRSALQKNRLHCPTEGPTNQTPYIKGTEGNGPGL 420
PRPQAGDPAGPTKGLKCPCLPTRRGHSRSALQKNRLHCPTEGPTNQTPYIKGTEGNGPGL
Sbjct: 361 PRPQAGDPAGPTKGLKCPCLPTRRGHSRSALQKNRLHCPTEGPTNQTPYIKGTEGNGPGL 420
Query: 421 GPQEEPPAPLTSQPERAGAGGSHGPDQLTGNLLCAPGQVQAAAMAPTSSQETYSVPWGRA 480
GPQEEPPAPLTSQPERAGAGGSHGPDQLTGNLLCAPGQVQAAAMAPTSSQETYSVPWGRA
Sbjct: 421 GPQEEPPAPLTSQPERAGAGGSHGPDQLTGNLLCAPGQVQAAAMAPTSSQETYSVPWGRA 480
Query: 481 GAGGSRGPDQLTGNLLCAPGQVPAAAVAPTSSQETYSVPQGRSSSQRARGKTPSSPTLSP 540
GAGGSRGPDQLTGNLLCAPGQVPAAAVAPTSSQETYSVPQGRSSSQRARGKTPSSPTLSP
Sbjct: 481 GAGGSRGPDQLTGNLLCAPGQVPAAAVAPTSSQETYSVPQGRSSSQRARGKTPSSPTLSP 540
Query: 541 SRGSPLLLREPSLVTDSLEAHRVNTVAHADCTTHARDAGLELGCAYRVRQVQAQHSRGAD 600
SRGSPLLLREPSLVTDSLEAHRVNTVAHADCTTHARDAGLELGCAYRVRQVQAQHSRGAD
Sbjct: 541 SRGSPLLLREPSLVTDSLEAHRVNTVAHADCTTHARDAGLELGCAYRVRQVQAQHSRGAD 600
Query: 601 ------------------------------DAQAQPTRARQCSHTMDSSTHIYSPQRQGM 630
DAQAQPTRARQCSHTMDSSTHIYSPQRQGM
Sbjct: 601 VSEREHAAVHMSGSVHMSGSVHLSVHISVGDAQAQPTRARQCSHTMDSSTHIYSPQRQGM 660
Query: 631 GKPVARRMGLGMRVQGAAKATESLTWVIFRKSKDGRVHLASSSRLRLRRLLFPLSTQGCE 690
GKPVARRMGLGMRVQGAAKATESLTWVIFRKSKDGRVHLASSSRLRLRRLLFPLSTQGCE
Sbjct: 661 GKPVARRMGLGMRVQGAAKATESLTWVIFRKSKDGRVHLASSSRLRLRRLLFPLSTQGCE 720
Query: 691 RHRSSPRRPPSAGVDVGLLLAQGRGVPAPASRSCERDGRRLVEGKQDSAEHQSGPEPALP 750
RHRSSPRRPPSAGVDVGLLLAQGRGVPAPASRSCERDGRRLVEGKQDSAEHQSGPEPALP
Sbjct: 721 RHRSSPRRPPSAGVDVGLLLAQGRGVPAPASRSCERDGRRLVEGKQDSAEHQSGPEPALP 780
Query: 751 SLLSTKPPLAEDGRGVAGEVGPVDHTALLGRTAPGLPCRVALPPLSHRLLETGVQTLELP 810
SLLSTKPPLAEDGRGVAGEVGPVDHTALLGRTAPGLPCRVALPPLSHRLLETGVQTLELP
Sbjct: 781 SLLSTKPPLAEDGRGVAGEVGPVDHTALLGRTAPGLPCRVALPPLSHRLLETGVQTLELP 840
Query: 811 GRQGDRQRTSSSGSDKDRQCRLVGGAVDEPVLSLGSTVLAAPRPAPGRGDCGCH 864
GRQGDRQRTSSSGSDKDRQCRLVGGAVDEPVLSLGSTVLAAPRPAPGRGDCGCH
Sbjct: 841 GRQGDRQRTSSSGSDKDRQCRLVGGAVDEPVLSLGSTVLAAPRPAPGRGDCGCH 894
>gi|239742245 PREDICTED: hypothetical protein XP_002342464 [Homo
sapiens]
Length = 424
Score = 485 bits (1248), Expect = e-137
Identities = 293/455 (64%), Positives = 303/455 (66%), Gaps = 88/455 (19%)
Query: 426 PPAPLTSQPERAGAGGSHGPDQL-----TGNLL-CAP---GQVQAAAM-----APTSSQE 471
PP P GG H +L TG LL C P G ++A PT
Sbjct: 42 PPFPKPRHWLSCTCGGEHENKELPLHQSTGRLLSCLPTRRGHSRSALQKNRLHCPTEGP- 100
Query: 472 TYSVPW--GRAGAGGSRGPDQLTGNLLCAPGQVPAAAVAPTSSQETYSVPQGRSSSQRAR 529
T P+ G G G GP + AP +SQ RSSSQRAR
Sbjct: 101 TNQTPYIKGTEGNGPGLGPQE--------------EPPAPLTSQPE------RSSSQRAR 140
Query: 530 GKTPSSPTLSPSRGSPLLLREPSLVTDSLEAHRVNTVAHADCTTHARDAGLELGCAYRVR 589
GKTPSSPTLSPSRGSPLLLREPSLVTDSLEA H C C +
Sbjct: 141 GKTPSSPTLSPSRGSPLLLREPSLVTDSLEA-------HRPCP-----------CPPQPN 182
Query: 590 QVQAQHSRGADDAQAQPTRARQCSHTMDSSTHIYSPQRQGMGKPVARRMGLGMRVQGAAK 649
Q+ Q S A AQ A S + P+ G
Sbjct: 183 QLAPQLS----SAPAQLVWAETHSLAL--------PRPNG-------------------- 210
Query: 650 ATESLTWVIFRKSKDGRVHLASSSRLRLRRLLFPLSTQGCERHRSSPRRPPSAGVDVGLL 709
ESLTWVIFRKSKDGRVHLASSSRLRLRRLLFPLSTQGCERHRSSPRRPPSAGVDVGLL
Sbjct: 211 -PESLTWVIFRKSKDGRVHLASSSRLRLRRLLFPLSTQGCERHRSSPRRPPSAGVDVGLL 269
Query: 710 LAQGRGVPAPASRSCERDGRRLVEGKQDSAEHQSGPEPALPSLLSTKPPLAEDGRGVAGE 769
LAQGRGVPAPASRSCERDGRRLVEGKQDSAEHQSGPEPALPSLLSTKPPLAEDGRGVAGE
Sbjct: 270 LAQGRGVPAPASRSCERDGRRLVEGKQDSAEHQSGPEPALPSLLSTKPPLAEDGRGVAGE 329
Query: 770 VGPVDHTALLGRTAPGLPCRVALPPLSHRLLETGVQTLELPGRQGDRQRTSSSGSDKDRQ 829
VGPVDHTALLGRTAPGLPCRVALPPLSHRLLETGVQTLELPGRQGDRQRTSSSGSDKDRQ
Sbjct: 330 VGPVDHTALLGRTAPGLPCRVALPPLSHRLLETGVQTLELPGRQGDRQRTSSSGSDKDRQ 389
Query: 830 CRLVGGAVDEPVLSLGSTVLAAPRPAPGRGDCGCH 864
CRLVGGAVDEPVLSLGSTVLAAPRPAPGRGDCGCH
Sbjct: 390 CRLVGGAVDEPVLSLGSTVLAAPRPAPGRGDCGCH 424
Score = 132 bits (333), Expect = 1e-30
Identities = 61/77 (79%), Positives = 65/77 (84%)
Query: 368 PAGPTKGLKCPCLPTRRGHSRSALQKNRLHCPTEGPTNQTPYIKGTEGNGPGLGPQEEPP 427
P + G CLPTRRGHSRSALQKNRLHCPTEGPTNQTPYIKGTEGNGPGLGPQEEPP
Sbjct: 65 PLHQSTGRLLSCLPTRRGHSRSALQKNRLHCPTEGPTNQTPYIKGTEGNGPGLGPQEEPP 124
Query: 428 APLTSQPERAGAGGSHG 444
APLTSQPER+ + + G
Sbjct: 125 APLTSQPERSSSQRARG 141
Score = 74.7 bits (182), Expect = 3e-13
Identities = 73/216 (33%), Positives = 91/216 (42%), Gaps = 53/216 (24%)
Query: 282 RHWLSCTCGGEHENKELPLHQSTGRLLSC----RGKTKSRPTVGDTAEQPPPHQNFLQLQ 337
RHWLSCTCGGEHENKELPLHQSTGRLLSC RG ++S LQ
Sbjct: 48 RHWLSCTCGGEHENKELPLHQSTGRLLSCLPTRRGHSRS------------------ALQ 89
Query: 338 QQPLSIP-KGPSIHTRQQANPQGCPRPQAGDPAGPTKGLKCPCLPTRRGHSRSALQKNRL 396
+ L P +GP+ T +G G GP + P P RS+ Q+ R
Sbjct: 90 KNRLHCPTEGPTNQTPYIKGTEG-----NGPGLGPQEE---PPAPLTSQPERSSSQRAR- 140
Query: 397 HCPTEGPTNQTPYIKGTEGNGPGLGPQEEPPAPLTSQPERAGAGGSHGPDQLTGNLLCAP 456
G T +P + + G+ L EP S P+QL L AP
Sbjct: 141 -----GKTPSSPTLSPSRGSPLLL---REPSLVTDSLEAHRPCPCPPQPNQLAPQLSSAP 192
Query: 457 GQVQAAAMAPTSSQETYSVPWGRAGAGGSRGPDQLT 492
Q+ A ET+S+ R GP+ LT
Sbjct: 193 AQLVWA--------ETHSLALPR-----PNGPESLT 215
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 52.8 bits (125), Expect = 1e-06
Identities = 121/511 (23%), Positives = 167/511 (32%), Gaps = 100/511 (19%)
Query: 39 GPSSPDVKGSCSVLGSTFLRKRPGSCCHPHPHRSPGRGGC-------GSLKQSCVSGPRG 91
GP P K S S L S L P P R C GS+ +
Sbjct: 944 GPPPPPPKRSSSALASANLADEPVPDAEPEDGLLGVRAQCRRASDLAGSVDTGSAGSVKS 1003
Query: 92 MAAVRLGHGLRPPGPRARQRFHRMATGWAVLGSPLGHPLRGCPPSPAAWPAPPAVGGGCT 151
+AA+ + G AR+ P GHP PA P G T
Sbjct: 1004 IAAMLELSSIGGGGRAARR-------------PPEGHP--------TPRPASPEPGRVAT 1042
Query: 152 VTLRIRPSESSTGSSAEPSRRRPSMFFLPRLGVAACQGAGEVEQSKP------GAVGPGG 205
V ++ E+ +RRR + L A +G GE P G P G
Sbjct: 1043 VLASVKHKEAIGPGGEVVNRRRTLSGPVTGLLATARRGPGESADPGPFVEDGTGRQRPRG 1102
Query: 206 GGRGQAG-PYPKLSPSDYSCMEHEQTVAVTSRPRGLSFHSISQQKLTQTAEPREPDADQR 264
+G+AG P L+ + S + A ++ + F LT E D +R
Sbjct: 1103 PSKGEAGVEGPPLAKVEASATLKRRIRAKQNQQENVKF------ILT------ESDTVKR 1150
Query: 265 LPVTQNRKNPDHQTQRGRHWLSCTCGGEHENKELPLHQSTGRLLSCRGKTKSRPTVGDTA 324
P + R+ G E H TG + ++ P
Sbjct: 1151 RPKAKERE----------------AGPEPPPPLSVYHNGTGTVRRRPASEQAGP-----P 1189
Query: 325 EQPPPHQNFLQLQQQPLSIPKGPSIHTRQQANPQGCPRPQAGDPAGPTKGLKCPCLPTRR 384
E PPP P P H P+G R A P P L P +P +
Sbjct: 1190 ELPPP--------PPPAEPPPTDLAHLPPLPPPEGEARKPAKPPVSPKPVLTQP-VPKLQ 1240
Query: 385 GHSRSALQKNRLHCPTEGPTNQTPYIKGTEGNGPGLGPQEEPPAPLTSQPERAGAG---G 441
G +K P GP +P +K G P + P + PP P +P +A AG G
Sbjct: 1241 GSPTPTSKK----VPLPGP--GSPEVKRAHGTPPPVSP-KPPPPPTAPKPVKAVAGLPSG 1293
Query: 442 SHGPDQLTGNLLCAPGQVQAAAMAPTSSQETYSVPWGRAGAGGSRGPDQLTGNLLCAPGQ 501
S GP +P + AA+A GA ++ P L P +
Sbjct: 1294 SAGPSPAP-----SPARQPPAALAKPPGTPP------SLGASPAKPPSP-GAPALHVPAK 1341
Query: 502 VP-AAAVAPTSSQETYSVPQGRSSSQRARGK 531
P AAA A ++ + P+G S AR K
Sbjct: 1342 PPRAAAAAAAAAAAPPAPPEGASPGDSARQK 1372
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 52.8 bits (125), Expect = 1e-06
Identities = 125/535 (23%), Positives = 180/535 (33%), Gaps = 88/535 (16%)
Query: 36 PEMGPSSPDVKGSCSVLGSTFLRKRPGSCCHPHPHRSPGRGGCGSLKQSCVSGPRGMAAV 95
P+ GP++P KG+ + P + P P SP + P+G +
Sbjct: 996 PKGGPATPSPKGAPT----------PPAVTPPSPKGSP----------AATPFPKGASTP 1035
Query: 96 RLGHGLRPPGPRARQRFHRMA--TGWAVLGSPLGHP----LRGCPPSPAAWPAPPAVGGG 149
P G A + A T A L SP G P L+G P PAA P P GG
Sbjct: 1036 PAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPK-GGP 1094
Query: 150 CTVTLRIRPSESSTGSSAEPSRRRPSMFFLPRLGVAACQGAGEVEQSKPGAVGPGGGGRG 209
T S G+ P+ PS P+ G+A G + P A P G G
Sbjct: 1095 AT--------PSPKGAPMPPAATPPS----PKGGLATPPHKGA--PTTPAATPPSPKG-G 1139
Query: 210 QAGPYPKLSPSDYSCMEHEQTVAVT--SRPRGLSFHSISQQKLTQTAEPREPDADQRLPV 267
A P PK +P+ T A T S GL+ T A P P P
Sbjct: 1140 LATPPPKGAPT---------TPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPS 1190
Query: 268 TQNRKNPDHQTQ---RGRHWLSCTCGGEHENKELPLHQSTGRLLSCRGKTKSRPTVGDTA 324
+ T +G G P G + P +
Sbjct: 1191 PKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPS 1250
Query: 325 EQ-----PPPHQNFLQLQQQPLSIPKGPSIHTRQQA-NPQGC--PRPQAGDPAGPTKGLK 376
+ PPP P S+ G + + A NP P P+ G P KG
Sbjct: 1251 PKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAP 1310
Query: 377 CPCL---PTRRGHSRSALQKNRLHCPTEGPTNQ--TPYIKGTEGN---GPGLGPQEEPPA 428
P P+ +G + K P P + TP + T + GP +E P
Sbjct: 1311 TPPAATPPSPKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPT 1370
Query: 429 PLTSQPERAGAGGSHGPDQLTGNLLCAP-GQVQAAAMAPTSSQETYSVPWGRAGAGGSRG 487
P + P G P G + +P G + A+ P S ++ + P R GA
Sbjct: 1371 PPAATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAATP-- 1428
Query: 488 PDQLTGNLLCAPGQVPAAAVAPTSSQE--TYSVPQGRSSSQRARGKTPSSPTLSP 540
+ G + AV P S ++ S P+G ++ ++G P+ P ++P
Sbjct: 1429 ----------SKGDLTPPAVTPVSLKKAPATSAPKGGPATPSSKG-DPTLPAVTP 1472
Score = 43.5 bits (101), Expect = 8e-04
Identities = 90/458 (19%), Positives = 153/458 (33%), Gaps = 74/458 (16%)
Query: 24 SGRGDCVQLQVDPEMGPSSPDVKGSCSVLGSTFL--RKRPGSCCHPHPHRSPGRGGCG-- 79
S +G P+ GP+ P KG + L +K P + +P +G
Sbjct: 1377 SHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTREGAATPSKGDLTPP 1436
Query: 80 -----SLKQS-CVSGPRGMAAVRLGHG------LRPPGPRARQRFHRMATGWAVLGSPLG 127
SLK++ S P+G A G + PP P+ ++AT + +P
Sbjct: 1437 AVTPVSLKKAPATSAPKGGPATPSSKGDPTLPAVTPPSPKEPPAPKQVATSSSPKKAPAT 1496
Query: 128 HPLRGCPPSPAAWPAPPAVGGGCTVTLR--IRPSESSTGSSAEPSRRRPSMFFLPRLGVA 185
G P PA P+ P + R I P+ + + P + V
Sbjct: 1497 PAPMGAPTLPAVIPSSPKEVPATPSSRRDPIAPTATLLSKKTPATLAPKEALIPPAMTVP 1556
Query: 186 ACQGAGEVEQSKPGAVGPGGGGRGQAGPYPKLSPSDYSCMEHEQTVAVTSRPRGLSFHSI 245
+ + + K P +A P ++PS Y + + + P ++ S
Sbjct: 1557 SPKKTPAIPTPKEAPATPSS---KEASSPPAVTPSTYKGAPSPKELLI---PPAVTSPSP 1610
Query: 246 SQQKLTQTAEPREPDADQRLPVTQNRKNPDHQTQRGRHWLSCTCGGEHENKELPLHQSTG 305
+ P P+ P + T K+ P ++
Sbjct: 1611 KEAPTPPAVTPPSPEKGPATPAPKGTPTSPPVTPSSL-------------KDSPTSPAS- 1656
Query: 306 RLLSCR-GKTKSRPTVGDTAEQPPPHQNFLQLQQQPLSIP-------KGPSIHTRQQANP 357
++C+ G T + + G A++ P + + P S P KGP +P
Sbjct: 1657 --VTCKMGATVPQASKGLPAKKGPTALKEVLVAPAPESTPIITAPTRKGPQTKKSSATSP 1714
Query: 358 QGCPRPQAGDPA-GPTKGL-KCPCLPTRRGHSRSALQKNRLHCPTEGPTNQTPYIKGTEG 415
CP P A + + GP + P LP ++ S++A K+ H P
Sbjct: 1715 PICPDPSAKNGSKGPLSTVAPAPLLPVQKDSSKTAKGKDASHSP---------------- 1758
Query: 416 NGPGLGPQEEPPAPLTS--------QPERAGAGGSHGP 445
GP P+ + PLT+ +PE A + P
Sbjct: 1759 KGPLAPPESKASTPLTAAAFEKVLPKPESASVSAAPSP 1796
Score = 39.7 bits (91), Expect = 0.012
Identities = 53/237 (22%), Positives = 71/237 (29%), Gaps = 49/237 (20%)
Query: 315 KSRPTVGDTAEQPPPHQNFLQLQQQPLSIPKGPSIHTRQQANPQGCPRPQAGDPAGPTKG 374
K P + T+ P + P IP PS P+G P P A P P G
Sbjct: 906 KQAPALSMTSSSPKK----ARATPAPKGIPASPS--------PKGAPTPPAATPPSPKGG 953
Query: 375 LKCPCLPTRRGHSRSALQKNRLHCPTEGPTNQTPYIKGTEGNGPGLGPQEEPPAPLTSQP 434
P P+ P PT +G P+ P P + P
Sbjct: 954 ---PATPS----------------PKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPP 994
Query: 435 ERAGAGGSHGPDQLTGNLLCAPGQVQAAAMAPTSSQETYSVPWGRAGAGGSRGPDQLTGN 494
G + P AP +P S P G S P +
Sbjct: 995 SPKGGPATPSPKG-------APTPPAVTPPSPKGSPAATPFP-----KGASTPPAATPPS 1042
Query: 495 LLCAPGQVPAAAVAPTSSQETYSVPQGRSSSQRARG------KTPSSPTLSPSRGSP 545
+P P APT+ T P+G ++ +G TP SP P+ SP
Sbjct: 1043 PKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPKGGPATPSP 1099
Score = 38.5 bits (88), Expect = 0.027
Identities = 49/198 (24%), Positives = 67/198 (33%), Gaps = 30/198 (15%)
Query: 350 HTRQQANPQGCPRPQAGDPAGPTKGLKCPCLPTRRGHSRSALQKNRLHCPTEGPTNQTPY 409
H+ +P+G P P A P P KG+ LP + + S + L P EGP P
Sbjct: 854 HSPTPPSPKGAPTPSAVTPLSP-KGV---TLPPKETPTPSVV---NLPFPKEGPATPAP- 905
Query: 410 IKGTEGNGPGLGPQEEPPAPLTSQPERAGAGGSHGPDQLTGNLLCAPGQVQAAAMAPTSS 469
P L P + P G S P AP A +P
Sbjct: 906 -----KQAPALSMTSSSPKKARATPAPKGIPASPSPKG-------APTPPAATPPSPKGG 953
Query: 470 QETYSVPWGRAGAGGSRGPDQLTGNLLCAPGQVPAAAVAPTSSQETYSVPQGRSSSQRAR 529
T S W P T P+ APT T P+G ++ +
Sbjct: 954 PATPSPKWAPT-------PPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPK 1006
Query: 530 GKTPSSPTLSP--SRGSP 545
G P+ P ++P +GSP
Sbjct: 1007 G-APTPPAVTPPSPKGSP 1023
Score = 36.6 bits (83), Expect = 0.10
Identities = 103/449 (22%), Positives = 140/449 (31%), Gaps = 62/449 (13%)
Query: 135 PSPAAWPAPPAVGGGCTVTLRIRPSESSTGSSAEPSRRRPSMFFLPRLGVAACQGAGEVE 194
P+P+ P G T + P+ S T SS + +R P+ +P + +GA
Sbjct: 886 PTPSVVNLPFPKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIP--ASPSPKGA---- 939
Query: 195 QSKPGAVGPGGGGRGQAGPYPKLSPSDYSCMEHEQTVAVTSRPRG-LSFHSISQQKLTQT 253
+ P A P G G A P PK +P+ A P+G + S
Sbjct: 940 PTPPAATPPSPKG-GPATPSPKWAPTP--------PAATPPSPKGGPATPSPKGAPTPPA 990
Query: 254 AEPREPDADQRLPVTQNRKNPDHQTQRGRHWLSCTCGGEHENKELPLHQSTGRLL---SC 310
A P P P + P T G P ST S
Sbjct: 991 ATPPSPKGGPATPSPKGAPTPPAVTPPSPK-------GSPAATPFPKGASTPPAATPPSP 1043
Query: 311 RGKTKSRP-------TVGDTAEQP---PPHQNFLQLQQQPLSIPKGPSIHTRQQANPQGC 360
+G + P T T P P + P + P P +P+G
Sbjct: 1044 KGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPPSPK-GGPATPSPKGA 1102
Query: 361 PRPQAGDPAGPTKGLKCP---CLPTRRGHSRSALQKNRLHCPTEG----PTNQTPYIKGT 413
P P A P P GL P PT + + + P +G P P KG
Sbjct: 1103 PMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGG 1162
Query: 414 EGNGPGLG----PQEEPPAP----LTSQPERAGAGGSHGPDQLTGNLLC-----APGQVQ 460
P G P PP+P T P+ A + P G L AP
Sbjct: 1163 LATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPA 1222
Query: 461 AAAMAPTSSQETYSVPWGRAGAGGSRGPDQLTGNLLCAPGQVPA-AAVAPTSSQETYSVP 519
A +P T S P G + P G P P A P S + + P
Sbjct: 1223 ATPPSPKGGLATPS-PKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATP 1281
Query: 520 QGRSSSQRARGKTPS---SPTLSPSRGSP 545
+ + A PS P SP +G+P
Sbjct: 1282 PHKGAPNPAVVTPPSPKGGPATSPPKGAP 1310
Score = 33.5 bits (75), Expect = 0.87
Identities = 60/257 (23%), Positives = 86/257 (33%), Gaps = 53/257 (20%)
Query: 323 TAEQPPPHQNFLQLQQQPLSIPKGPSIHTRQQANPQGCPRPQAGDPAGPTKGLKCPCLPT 382
T P Q Q Q + +P ++ G P P P P +CP
Sbjct: 6 TETVPATEQELPQPQAETAVLPMSSALSVTAAL---GQPGPTLPPPCSPAPQ-QCPLSAA 61
Query: 383 RRGH---SRSALQKNRLHCPTEGPTNQTPYIKGTEGNGPG-----LGPQEEPPAPLTSQP 434
+ S S + L P ++ T GT P +GP P A + P
Sbjct: 62 NQASPFPSPSTIASTPLEVPFPQSSSGTALPLGTAPEAPTFLPNLIGPPISPAALALASP 121
Query: 435 ERA----GAGGSHGPDQLTGNLLCAPGQVQAAAMAPTSSQETYSVPWGRAGAGGSRGPDQ 490
A G S P L A+AP S Q++ + P
Sbjct: 122 MIAPTLKGTPSSSAPLALV-------------ALAPHSVQKSSAFP-------------- 154
Query: 491 LTGNLLCAPGQVPAAAVAPTSSQETYSVPQGRSSSQRARGKTPSSPTLSPSRGSPLLLRE 550
NLL +P P+ AVA + S T S P S + K PS +P +G+P
Sbjct: 155 --PNLLTSP---PSVAVAESGSVITLSAPIAPSEPKTNLNKVPSEVVPNP-KGTP----S 204
Query: 551 PSLVTDSLEAHRVNTVA 567
P + ++ H V +A
Sbjct: 205 PPCIVSTVPYHCVTPMA 221
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 49.7 bits (117), Expect = 1e-05
Identities = 131/508 (25%), Positives = 161/508 (31%), Gaps = 102/508 (20%)
Query: 62 GSCCHPHPHRSPGRGGCGSLKQSCVSGPRGMAAVRLGHGLRPPGPRARQRFHRMATGWAV 121
G CC P G + + V GP+G R G P GP R
Sbjct: 89 GECCPVCPD---GSESPTDQETTGVEGPKGDTGPRGPRG--PAGPPGRD----------- 132
Query: 122 LGSPLGHPLRGCPPSPAAWPAPPAVGGGCTVTLRIRPSESSTGSSAEPSRRRPSMFFLPR 181
G P G P PP P P PP +GG L E STG + P PS PR
Sbjct: 133 -GIP-GQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSG---PR 187
Query: 182 -----LGVAACQG--AGEVEQSKPGAVGPGG-----------GGRGQAG----PYPKLSP 219
G QG E +PGA GP G G G+AG P + P
Sbjct: 188 GLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPP 247
Query: 220 SDYSCMEHEQTVAVTSRPRGLSFHSISQQKLTQTAEPREPDADQRLPVTQNRKNPDHQTQ 279
T + F + K A P P + P P
Sbjct: 248 GPQGARGLPGTAGLPGMKGHRGFSGLDGAK--GDAGPAGPKGEPGSPGENGA--PGQMGP 303
Query: 280 RGRHWLSCTCGGEHENKELPLHQSTGRLLSCRGKTKSRPTVGDTAEQPPPHQNFLQLQQQ 339
RG GE P G +R G T PP
Sbjct: 304 RG-------LPGERGRPGAP------------GPAGARGNDGATGAAGPPGPT------G 338
Query: 340 PLSIPKGP-SIHTRQQANPQGCPRPQAGDPAGPTKGLKCPCLPTRRGHSRSALQKNRLHC 398
P P P ++ + +A PQG PR G P G +G P P G + A
Sbjct: 339 PAGPPGFPGAVGAKGEAGPQG-PRGSEG-PQG-VRGEPGP--PGPAGAAGPAGNPGADGQ 393
Query: 399 PTEGPTNQTPYIKGTEG----NGPGLGPQEE--PPAPLTSQPERAGAGGSHGPDQLTGNL 452
P N P I G G GP GPQ PP P + E GA GS G G
Sbjct: 394 PGAKGANGAPGIAGAPGFPGARGPS-GPQGPGGPPGPKGNSGE-PGAPGSKGDTGAKGE- 450
Query: 453 LCAPGQVQAAAMAPTSSQETYSVPWGRAGAGGSRGPDQLTGNLLCAPGQVPAAAVAPTSS 512
PG V + +E G+ GA G GP L G PG+
Sbjct: 451 ---PGPVGVQGPPGPAGEE------GKRGARGEPGPTGLPG----PPGERGGPGSRGFPG 497
Query: 513 QETYSVPQGRSSSQRARGKTPSSPTLSP 540
+ + P+G + + + G P+ P SP
Sbjct: 498 ADGVAGPKGPAGERGSPG--PAGPKGSP 523
Score = 35.4 bits (80), Expect = 0.23
Identities = 36/112 (32%), Positives = 41/112 (36%), Gaps = 35/112 (31%)
Query: 36 PEMGPSSPDVKGSCSVLGSTFLRKRPGSCCHPHPHRSPGRGGCGSLKQSCVSGPRGMAAV 95
P P SP +G G R PGS +PG+ G L GP G
Sbjct: 1119 PPGPPGSPGEQGPSGASGPAGPRGPPGSA------GAPGKDGLNGLP-----GPIG---- 1163
Query: 96 RLGHGLRPPGPRARQRFHRMATGWAVLGSPLGHPLRGCPPSPAAWPAPPAVG 147
PPGPR R TG A P+G P PP P P PP+ G
Sbjct: 1164 -------PPGPRGR-------TGDA---GPVGPP---GPPGPPGPPGPPSAG 1195
Score = 33.5 bits (75), Expect = 0.87
Identities = 64/246 (26%), Positives = 83/246 (33%), Gaps = 34/246 (13%)
Query: 2 AGPALQQSTARALACPLQDGDISGRGDCVQLQVDPEMGPSSP----DVKGSCSVLGSTFL 57
AG +Q L P G RG + V GP+ P G+ G
Sbjct: 655 AGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGA 714
Query: 58 RKRPGSCCHPHPHRSPGRGGCGSLK----QSCVSGPRGMAAVRLGHGLR-------PPGP 106
PGS P PG G L +GP+G G+R PPGP
Sbjct: 715 PGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGP 774
Query: 107 RARQRFHRMATGWAVLGSPLGHPLRGCP--------PSPAAWPAPPAVGGGCTVTLRIRP 158
A + +G + P G RG P P PA + PP G + P
Sbjct: 775 -AGAPGDKGESGPSGPAGPTG--ARGAPGDRGEPGPPGPAGFAGPPGADG--QPGAKGEP 829
Query: 159 SES-STGSSAEPSRRRPSMFFLP--RLGVAACQGAGEVEQSKPGAVG-PGGGGR-GQAGP 213
++ + G + P P+ P +G +GA PGA G PG GR G GP
Sbjct: 830 GDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGA-RGSAGPPGATGFPGAAGRVGPPGP 888
Query: 214 YPKLSP 219
P
Sbjct: 889 SGNAGP 894
>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
Length = 1094
Score = 49.7 bits (117), Expect = 1e-05
Identities = 158/694 (22%), Positives = 220/694 (31%), Gaps = 121/694 (17%)
Query: 103 PPGPRARQRFHRMATGWAVLGSPLGHPLRGCPPSPAAWPAPPAVGGGCTVTLRIRPSESS 162
PP PR H+ G AV PLG P + P PP GG S
Sbjct: 498 PPPPRRTHSLHQR--GLAVPDGPLGLPPKPERKQQPQLPRPPTTGG-------------S 542
Query: 163 TGSSAEPSRRRPSMFFLPRLGVAACQGAGEVEQSKPGAVGPGGGGRGQAGPYPKLSPSD- 221
G+ A P P+ ++P L PGG R P LSPS
Sbjct: 543 EGAGAAPCPPNPANSWVPGL-------------------SPGGSRRPPRSPERTLSPSSG 583
Query: 222 YSCMEHEQTVAVTSRPRGLSFHSISQQKLTQTAEPREPDADQRLPVTQNRKNPDHQTQRG 281
YS Q+ T P+GL+ S K A+P +P+ L ++P
Sbjct: 584 YS----SQSGTPTLPPKGLAGPPASPGK----AQPPKPERVTSL------RSPGASVSSS 629
Query: 282 RHWLSCTCGGEHENKELPLHQSTGRLLSCRGKTKSRPTVGDTAEQPPPHQNFLQLQQQPL 341
L+ C + P +S ++L+ G R + PPH P
Sbjct: 630 ---LTSLCSSSSD--PAPSDRSGPQILTPLG---DRFVI-------PPHPKVPAPFSPPP 674
Query: 342 SIPKGPSIHTRQQANPQGCPRPQAGDPAGPTKGLKCPCLPTRRGHSRSALQKNRLHCPTE 401
S P+ P+ A P P P + A P + P P T
Sbjct: 675 SKPRSPNPAAPALAAPAVVPGPVSTTDASP----QSPPTPQ----------------TTL 714
Query: 402 GPTNQTPYIKGTEGNGPGLGPQEEPPAPLTSQPE---RAGAGGSHGPDQLTGNLLCAP-- 456
P ++P I + P P PP P T +PE A + + L P
Sbjct: 715 TPLQESPVISKDQSPPPSPPPSYHPPPPPTKKPEVVVEAPSASETAEEPLQDPNWPPPPP 774
Query: 457 --GQVQAAAMAPTSSQETYSVPWGRAGAGGSRGPDQLTGNLLCAPGQVPAAAVAPTSSQE 514
+ Q +MA E G G +L + + A + P S +
Sbjct: 775 PAPEEQDLSMADFPPPEEAFFSVASPEPAGPSGSPELVSSPAASSSSATALQIQPPGSPD 834
Query: 515 TYSVPQGRSSSQRARGKTPSSPTLSP-----SRGSPLLLREPSLVTDS-LEAHRVNTV-A 567
P + + A G P P G P LVT S L+ R+ +V A
Sbjct: 835 PPPAPPAPAPASSAPGHVAKLPQKEPVGCSKGGGPPREDVGAPLVTPSLLQMVRLRSVGA 894
Query: 568 HADCTTHARDAGLELGCAYRVRQVQAQHSRGADDAQAQPTRARQCSHTMDSSTHIYSPQR 627
T A R +A R + CS + +S + S Q
Sbjct: 895 PGGAPTPALGPSAPQKPLRRALSGRASPVPAPSSGLHAAVRLKACS--LAASEGLSSAQP 952
Query: 628 QGMGKPVARRMGLGMRVQGAAKATESLTWVIFRKSKDGRVHLASSSRLRLRRLLFPLSTQ 687
G + R Q A + RK + R + R L+ L +
Sbjct: 953 NGPPEAEPR------PPQSPASTASFIFSKGSRKLQLERPVSPETQADLQRNLVAELRSI 1006
Query: 688 GCERHRSSPRRPPSAGVDVGLLLAQGRGVPAPASRSCERDGRRLVEGKQDSAEHQSGPEP 747
+R +P++ P A V GVP PAS S R + + P
Sbjct: 1007 SEQRPPQAPKKSPKAPPPVA--RKPSVGVPPPASPSYPR-----------AEPLTAPPTN 1053
Query: 748 ALPSLLS-TKPPLAEDGRGVAGEVGPVDHTALLG 780
LP TK LAE+G GV VGP + L G
Sbjct: 1054 GLPHTQDRTKRELAENG-GVLQLVGPEEKMGLPG 1086
>gi|56243590 WD repeat domain 33 isoform 1 [Homo sapiens]
Length = 1336
Score = 47.8 bits (112), Expect = 4e-05
Identities = 99/402 (24%), Positives = 133/402 (33%), Gaps = 84/402 (20%)
Query: 192 EVEQSKPGAVGPGGGGRGQAGPYPKLSPSDYSCMEHEQTVAVTSRPRGLSFHSISQQKLT 251
+VEQ +P P G GP P S + P+G SQQ
Sbjct: 568 QVEQIQP----PPSSGTPLLGPQPFPGQGPMSQI-----------PQGFQQPHPSQQMPM 612
Query: 252 QTAE--PREPDADQRLPVTQNRKNPD----HQTQRGRHWLSCTCGGEHENKELPLHQSTG 305
A+ P P R P Q + P HQ G G + + LP Q
Sbjct: 613 NMAQMGPPGPQGQFRPPGPQGQMGPQGPPLHQGGGGPQGFMGPQGPQGPPQGLPRPQD-- 670
Query: 306 RLLSCRGKTKSRPTVGDTAEQPPPHQNFLQLQQQPLSI--PKGPSIHTRQQANPQGCPRP 363
+ +G + G Q PP Q + P GP H PQG P P
Sbjct: 671 -MHGPQGMQRHPGPHGPLGPQGPPGPQGSSGPQGHMGPQGPPGPQGHI----GPQGPPGP 725
Query: 364 QAG-DPAGP--TKGLKCPCLPTRRGHSRSALQKNRLHCPTEGPTNQTPYIKGTEGNGP-- 418
Q P GP T+G++ P P R H GP +Q I+G GP
Sbjct: 726 QGHLGPQGPPGTQGMQGPPGP------RGMQGPPHPHGIQGGPGSQG--IQGPVSQGPLM 777
Query: 419 GLGPQ--EEPPAPLTSQ------------------PERAGAGGSHGPDQLTG-------- 450
GL P+ + PP P +Q P G HGP ++ G
Sbjct: 778 GLNPRGMQGPPGPRENQGPAPQGMIMGHPPQEMRGPHPPGGLLGHGPQEMRGPQEIRGMQ 837
Query: 451 ------NLLCAPGQVQAAAMAPTSSQETYSVPWGRAGA---GGSRGPDQLTGNLLCAPGQ 501
++L P +++ P SQ P G G GG +GP G A G
Sbjct: 838 GPPPQGSMLGPPQELRG----PPGSQSQQGPPQGSLGPPPQGGMQGPPGPQGQQNPARGP 893
Query: 502 VPAAAVAPTSSQETYSVPQGRSSSQRARGKTPSSPTLSPSRG 543
P+ P Q+T + G + G++ P L P G
Sbjct: 894 HPSQGPIPFQQQKTPLLGDGPRAPFNQEGQSTGPPPLIPGLG 935
Score = 36.6 bits (83), Expect = 0.10
Identities = 101/458 (22%), Positives = 141/458 (30%), Gaps = 84/458 (18%)
Query: 33 QVDPEMGPSSPDVKGSCSVLGSTFLRKRPGSCCHPHPHRSPGRGGCGSLKQSCVSGPRGM 92
Q+ P +P + G G + + P PHP + ++ Q GP+G
Sbjct: 571 QIQPPPSSGTP-LLGPQPFPGQGPMSQIPQGFQQPHPSQQMPM----NMAQMGPPGPQGQ 625
Query: 93 AAVRLGHGLRPPGPRARQRFHRMATGWAVLGSPLGHPLRGCPPSPAAWPAPPAVGGGCTV 152
RPPGP+ + P G PL P + P G
Sbjct: 626 --------FRPPGPQGQM-------------GPQGPPLHQGGGGPQGFMGPQGPQGPPQG 664
Query: 153 TLRIRPSESSTGSSAEPSRRRPSMFFLPRLGVAACQGAGEVEQSKPGAVGPGG-----GG 207
R + G P P L G QG+ Q G GP G G
Sbjct: 665 LPRPQDMHGPQGMQRHPGPHGP----LGPQGPPGPQGSSG-PQGHMGPQGPPGPQGHIGP 719
Query: 208 RGQAGPYPKLSPSDYSCMEHEQTVAVTSRPRGLSF----HSISQQKLTQTAE-PREPDAD 262
+G GP L P Q + PRG+ H I +Q + P
Sbjct: 720 QGPPGPQGHLGPQG---PPGTQGMQGPPGPRGMQGPPHPHGIQGGPGSQGIQGPVSQGPL 776
Query: 263 QRLPVTQNRKNPDHQTQRGRHWLSCTCGGEHENKELPLHQSTGRLLSCRGKTKSRPTVGD 322
L + P + +G G H +E+ G LL + P
Sbjct: 777 MGLNPRGMQGPPGPRENQGPAPQGMIMG--HPPQEMRGPHPPGGLLGHGPQEMRGPQEIR 834
Query: 323 TAEQPPPHQNFLQLQQQPLSIPKGPSIHTRQQANPQGC--PRPQAG--DPAGPTKGLKCP 378
+ PPP + L Q+ +GP QQ PQG P PQ G P GP +G + P
Sbjct: 835 GMQGPPPQGSMLGPPQEL----RGPPGSQSQQGPPQGSLGPPPQGGMQGPPGP-QGQQNP 889
Query: 379 CLPTRRGHSRSALQKNRLHCPTEGP----------TNQTPYIKGT--------------- 413
Q+ + +GP T P I G
Sbjct: 890 ARGPHPSQGPIPFQQQKTPLLGDGPRAPFNQEGQSTGPPPLIPGLGQQGAQGRIPPLNPG 949
Query: 414 EGNGPGLGPQEEPP----APLTSQPERAGAGGSHGPDQ 447
+G GP G PP P++ + G HGP++
Sbjct: 950 QGPGPNKGDSRGPPNHHMGPMSERRHEQSGGPEHGPER 987
>gi|66529407 tensin [Homo sapiens]
Length = 1735
Score = 47.0 bits (110), Expect = 8e-05
Identities = 80/321 (24%), Positives = 116/321 (36%), Gaps = 52/321 (16%)
Query: 356 NPQGCPRPQAGDPAGPTKGLKCPCLPTRRGHSRSALQKNRLHCPTEGPTNQTP------- 408
+P G R Q+ A P + P P R G SR A+Q+ + Q P
Sbjct: 612 DPSGMFRSQSFSEAEP----QLPPAPVRGGSSREAVQRGLNSWQQQQQQQQQPRPPPRQQ 667
Query: 409 ---YIKGTEGNGPGLGPQEEPPAPLTSQPERAGAGGSHGPDQLTGNLLCAPGQVQAAAMA 465
+++ + P P E P P + RA + T N+L + A+A A
Sbjct: 668 ERAHLESLVASRPSPQPLAETPIPSLPEFPRAASQQEIEQSIETLNMLMLDLE-PASAAA 726
Query: 466 PTSSQETYSVPWGRAG-------AGGSRGPDQLTGNLLCAPGQVPAA------AVAPTSS 512
P ++ W A +G SR LT + G +P+ AP +S
Sbjct: 727 PLHKSQSVPGAWPGASPLSSQPLSGSSRQSHPLTQS---RSGYIPSGHSLGTPEPAPRAS 783
Query: 513 QETYSVPQGRSSS------------QRARGKTPSS---PTLSPSRGSPLLLREPSLVTDS 557
E SVP GRS S Q K+P+S P P+ SP ++P
Sbjct: 784 LE--SVPPGRSYSPYDYQPCLAGPNQDFHSKSPASSSLPAFLPTTHSPPGPQQPPASLPG 841
Query: 558 LEAHRVNTVAHADC----TTHARDAGLELGCAYRVRQVQAQHSRGADDAQAQPTRARQCS 613
L A + + A T LE A+RV VQA+ + A+ RA
Sbjct: 842 LTAQPLLSPKEATSDPSRTPEEEPLNLEGLVAHRVAGVQAREKQPAEPPAPLRRRAASDG 901
Query: 614 HTMDSSTHIYSPQRQGMGKPV 634
+ S SP+ G+ PV
Sbjct: 902 QYENQSPEATSPRSPGVRSPV 922
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 46.6 bits (109), Expect = 1e-04
Identities = 124/493 (25%), Positives = 157/493 (31%), Gaps = 106/493 (21%)
Query: 37 EMGP-SSPDVKGSCSVLGSTFLRKRPGSCCHPHPHRS---------------PGRGGC-- 78
++GP +P G GS +R +PGS P P S PG+ G
Sbjct: 586 KLGPLGAPGEDGRPGPPGSIGIRGQPGSMGLPGPKGSSGDPGKPGEAGNAGVPGQRGAPG 645
Query: 79 --GSLKQSCVSGPRGMAAVRLGHGLRPPGPRARQRFHRMATGWAVLGSPLGHPLRGCPPS 136
G + S GP G+A R G PPGP TG+ L P G P G P
Sbjct: 646 KDGEVGPSGPVGPPGLAGERGEQG--PPGP----------TGFQGLPGPPGPPGEGGKPG 693
Query: 137 PAAWPAPPAVGGGCTVTLRIRPSESSTGSSAEPSRRRPSMFFLPRLGVAACQGAGEVEQS 196
P P G L R + G EP G+ G E+
Sbjct: 694 DQGVPGDP----GAVGPLGPRGERGNPGERGEP-------------GITGLPG----EKG 732
Query: 197 KPGAVGPGG--GGRGQAGPYPKLSPSDYSCMEHEQTVAVTSRPRGLSFHSISQQKLTQTA 254
G GP G G G +G P M E+ +A T P+G I ++ TA
Sbjct: 733 MAGGHGPDGPKGSPGPSGTPGDTGPPGLQGMPGERGIAGTPGPKG-DRGGIGEKGAEGTA 791
Query: 255 EPREPDADQRLPVTQNRKNPDHQTQRGRHWLSCTCGGEHENKELPLHQSTGRLLSCRGKT 314
D + LP P T GE + L + RG+
Sbjct: 792 ---GNDGARGLPGPLGPPGPAGPTGE---------KGEPGPRGLVGPPGSRGNPGSRGEN 839
Query: 315 KSRPTVGDTAEQPPPHQNFLQLQQQPLSIPKGPSIHTRQQANPQGCPRPQ--AGDPAGPT 372
VG Q P Q ++ + P P Q G P PQ AG P GP
Sbjct: 840 GPTGAVGFAGPQGPDGQPGVKGE------PGEPG-----QKGDAGSPGPQGLAGSP-GPH 887
Query: 373 KGLKCPCLPTRRGHSRSALQKNRLHCPTEGPTNQTPYIKGTEGNGPGLGPQEEPPAPLTS 432
P L RG T+GP T G G+ +GP AP +
Sbjct: 888 GPNGVPGLKGGRG--------------TQGPPGAT----GFPGSAGRVGPPGPAGAPGPA 929
Query: 433 QPERAGAGGSHGPDQLTGNLLCAPGQVQAAAMAPTSSQETYSVPW--GRAGAGGSRGPDQ 490
P G G GP L G+ P P G+ G G GP
Sbjct: 930 GP--LGEPGKEGPPGLRGDPGSHGRVGDRGPAGPPGGPGDKGDPGEDGQPGPDGPPGPAG 987
Query: 491 LTG--NLLCAPGQ 501
TG ++ PGQ
Sbjct: 988 TTGQRGIVGMPGQ 1000
Score = 30.8 bits (68), Expect = 5.6
Identities = 55/204 (26%), Positives = 64/204 (31%), Gaps = 12/204 (5%)
Query: 357 PQGCPRPQAGDPAGPTKGLKCPCLPT-RRGHSRSALQKNRLHCPTEGPTNQTPYIKGTEG 415
P G P +G P P G+K PT RG Q+ P + P GT+G
Sbjct: 370 PLGIPG-SSGFPGNP--GMKGEAGPTGARGPEGPQGQRGETGPPGPVGSPGLPGAIGTDG 426
Query: 416 NGPGLGPQEEP----PAPLTSQPERAGAGGSHGPDQLTGNL--LCAPGQVQAAAMAPTSS 469
GP P P P G GS GP + G PG A
Sbjct: 427 TPGAKGPTGSPGTSGPPGSAGPPGSPGPQGSTGPQGIRGQPGDPGVPGFKGEAGPKGEPG 486
Query: 470 QETYSVPWGRAGAGGSRGPDQLTGNLLCAPGQVPAAAVAPTSSQETYSVPQGRSSSQRAR 529
P G G G RGP G + PG V G +Q R
Sbjct: 487 PHGIQGPIGPPGEEGKRGPRGDPGT-VGPPGPVGERGAPGNRGFPGSDGLPGPKGAQGER 545
Query: 530 GKTPSSPTLSPSRGSPLLLREPSL 553
G SS S+G P EP L
Sbjct: 546 GPVGSSGP-KGSQGDPGRPGEPGL 568
>gi|4826998 splicing factor proline/glutamine rich (polypyrimidine
tract binding protein associated) [Homo sapiens]
Length = 707
Score = 45.4 bits (106), Expect = 2e-04
Identities = 63/231 (27%), Positives = 82/231 (35%), Gaps = 42/231 (18%)
Query: 290 GGEHENKELP----LHQSTGRLLSCRGKTKSRPTVG-----DTAEQPPPHQNFLQLQQQP 340
GG H+ + P L+Q+ G + G++ +P + +QPPP Q Q Q P
Sbjct: 26 GGLHDFRSPPPGMGLNQNRGPMGPGPGQSGPKPPIPPPPPHQQQQQPPPQQPPPQ-QPPP 84
Query: 341 LSIPKGPSIHTRQQ--ANPQGCPRPQAGDPAGPTKGLKCPCLPTRRGHSRSALQKNRLHC 398
P P H +QQ PQ +P GP G+ SA +
Sbjct: 85 HQPPPHPQPHQQQQPPPPPQDSSKPVVAQGPGPAPGV------------GSAPPASSSAP 132
Query: 399 PTEGPTNQTPYIKGTEGNGPGLGPQEEPPAPLTSQPERA------GAGGSHGPDQLTGNL 452
P PT+ P G+GP GP PP +TS P A +G P Q G
Sbjct: 133 PATPPTSGAP-----PGSGP--GPTPTPPPAVTSAPPGAPPPTPPSSGVPTTPPQAGG-- 183
Query: 453 LCAPGQVQAAAMAPTSSQETYSVPWGRAGAGGSRGPDQLTGNLLCAPGQVP 503
P AA P + P G G GP G L PG P
Sbjct: 184 ---PPPPPAAVPGPGPGPKQGPGPGGPKGGKMPGGPKPGGGPGLSTPGGHP 231
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 45.1 bits (105), Expect = 3e-04
Identities = 118/548 (21%), Positives = 163/548 (29%), Gaps = 59/548 (10%)
Query: 58 RKRPGSCCHPHPHRSPGRGGCGSLKQSCVSGPRGMAAVRL--------GHGLRPPGPRAR 109
R P P P SPGR G+ + GP G +R+ G P A
Sbjct: 102 RAPPAKNTSPGPVSSPGRAS-GTTRP----GPLGQKGLRISAEETVARGKATEAPKRSAL 156
Query: 110 QRFHRMATGWAVLGSPLGHPLR---------GCP-PSPAAWPAPPAVGGGCTVTLRIRPS 159
R T G+P R G P P+P+A P PP G +V+ S
Sbjct: 157 SAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVS---SAS 213
Query: 160 ESSTGSSAEPSRRRPSMFFLPRLGVAACQGAGEVEQSKPGAVGPGGGGRGQAGPYPKL-S 218
E ST + +RRRPS + + + S P GP G +A +P
Sbjct: 214 EHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPK 273
Query: 219 PSDYSCMEHEQTVAVTSRPRGLSFHSISQQKLTQTAEPR-----EPDADQRLPVTQNRKN 273
P + Q PR + ++ + A P + A LP T + +
Sbjct: 274 PKGLQALRPPQVTP----PRKDAAPALGPLSSSPLATPSPSAALQSQAPPTLPATPHSSS 329
Query: 274 PDHQTQRGRHWLSCTCGGEHENKELPLHQST----------GRLLSCRGKTKSRPTVGDT 323
Q + + LP +T L P +
Sbjct: 330 LTCQLATPLPLAPPSPSAPPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPL 389
Query: 324 AEQPPPHQNFLQLQ--QQPLSIPKGPSIHTRQQANPQG--------CPRPQAGDPAGPTK 373
A PP L L Q P S P P + +PQ P + P+ P +
Sbjct: 390 ATPPPQAPPALALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQ 449
Query: 374 GLKCPCLPTRRGHSRSALQKNRLHCPTEGPTNQTPYIK-GTEGNGPGLGPQEEPPAPLTS 432
P P S SA ++ P Q P + P P + P PL +
Sbjct: 450 APFSP--PASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAA 507
Query: 433 QPERAGAGGSHGPDQLTGNLLCAPGQVQAAAMAPTSSQETYSVPWGRAGAGGSRGPDQLT 492
P + P L L A A+ + S+P + P L
Sbjct: 508 PPLQLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLA 567
Query: 493 GNLLCAPGQVPAAAVAPTSSQETYSVPQGRSSSQRARGKTPSSPTLSPSRGSPLLLREPS 552
LL P PA+ + P S R P PSR L P
Sbjct: 568 APLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPD 627
Query: 553 LVTDSLEA 560
L S A
Sbjct: 628 LAGHSSSA 635
Score = 35.8 bits (81), Expect = 0.18
Identities = 65/272 (23%), Positives = 85/272 (31%), Gaps = 46/272 (16%)
Query: 316 SRPTVGDTAEQPPPHQNFLQLQQQPLSIPKGPSIHTRQQANPQGCPRPQAGDPAGPTKGL 375
SRP E+ PP +N P+S P S TR Q R A + K
Sbjct: 92 SRPPASGRGERAPPAKN---TSPGPVSSPGRASGTTRPGPLGQKGLRISAEETVARGKAT 148
Query: 376 KCPCLPTRRGHSRSALQKNRLHCPTEGPTNQTPY--------IKGTEGNGPGLGPQEEPP 427
+ P RSAL T GPT TP GTE P P P
Sbjct: 149 EAP--------KRSALSAGARR-DTSGPTPGTPSPAMARRSRAAGTEVGLPRPAPSARPR 199
Query: 428 APLTSQPERAGAGGSHG---PDQLTGNLLCAPGQVQAAAMAPTSSQETYSVPWGRAGAGG 484
P + + H P A G +Q A SS T R+G
Sbjct: 200 PPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPS- 258
Query: 485 SRGPDQLTGNLLCAPGQVPAAAVAPTSSQETYSVPQGRSSSQRARGKTP---SSPTLSPS 541
+RG P A P+ + P+G + + + P ++P L P
Sbjct: 259 ARG--------------TPRAPAHPSQPK-----PKGLQALRPPQVTPPRKDAAPALGPL 299
Query: 542 RGSPLLLREPSLVTDSLEAHRVNTVAHADCTT 573
SPL PS S + H+ T
Sbjct: 300 SSSPLATPSPSAALQSQAPPTLPATPHSSSLT 331
Score = 30.0 bits (66), Expect = 9.6
Identities = 35/114 (30%), Positives = 42/114 (36%), Gaps = 26/114 (22%)
Query: 695 SPRRPPSAGVDVG-----LLLAQGRGVPAPASRSCERDGRRLVEGKQDSAEHQSGPEPAL 749
+PRRPP+ G D L LA G P P SRS + SGP+ A
Sbjct: 585 APRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRS--------------PSSTLSGPDLAG 630
Query: 750 PSLLSTKPPLAEDGRGV-----AGEVGPVDHTALLGRTAPGLPCRVALPPLSHR 798
S +T P E+ RG G A L P R PPL+ R
Sbjct: 631 HSSSATSTP--EELRGYDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFR 682
>gi|91718902 myeloid/lymphoid or mixed-lineage leukemia 3 [Homo
sapiens]
Length = 4911
Score = 45.1 bits (105), Expect = 3e-04
Identities = 57/233 (24%), Positives = 84/233 (36%), Gaps = 31/233 (13%)
Query: 317 RPTVGDTAEQPPPHQNFLQLQQQPLSIPKGPSIHTRQQANPQGCPRPQAGDPAGPTKGLK 376
RPT D Q P Q P H+ A+P G PRP P
Sbjct: 2167 RPTTVDPYSQQPQTPR-PSTQTDLFVTPVTNQRHSDPYAHPPGTPRPGISVPYSQPPATP 2225
Query: 377 CPCLPTRRGHSRSALQKNRLHCPTEGPTNQTPYIKGTEGNGPGL-GPQEEPPAPLTSQPE 435
P + G +RS++ + P P NQ P+++ + GP L GP PP + P
Sbjct: 2226 RPRIS--EGFTRSSMTR-----PVLMP-NQDPFLQAAQNRGPALPGPLVRPPDTCSQTPR 2277
Query: 436 RAGAGGSHGPDQLTGNLLCAPGQVQAAAMAPTSSQETYS--------VPWGRAGAGGS-- 485
G G S +++ + A + M P S +++ R G+ GS
Sbjct: 2278 PPGPGLSDTFSRVSPS--AARDPYDQSPMTPRSQSDSFGTSQTAHDVADQPRPGSEGSFC 2335
Query: 486 -------RGPDQLTGNLLCAPGQVPAAAVAPTSSQETYSVPQGRSSSQRARGK 531
Q + PG VP + V T +Q T ++ Q + R R K
Sbjct: 2336 ASSNSPMHSQGQQFSGVSQLPGPVPTSGV--TDTQNTVNMAQADTEKLRQRQK 2386
>gi|89142735 alpha 3 type IV collagen isoform 4 precursor [Homo
sapiens]
Length = 1494
Score = 44.3 bits (103), Expect = 5e-04
Identities = 67/242 (27%), Positives = 86/242 (35%), Gaps = 44/242 (18%)
Query: 40 PSSPDVKGSCSVLGSTFLRKRPGSCCHPHPHRSPG---------RGGCGSLKQSCVSGPR 90
P P + G+ + G T R PGS P PG +G GS+ GP
Sbjct: 1224 PGPPGLPGAI-IPGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPP 1282
Query: 91 GMAAV-----RLGHGLRP--PGPRARQRFHRMATGWAVLGSPLGHPLRGCPPSPAAWPAP 143
G A RLG P PGPR F G+P G PP P P
Sbjct: 1283 GTAGDMGPPGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNP-GFLGSIGPPGPIGPKGP 1341
Query: 144 PAVGG--GCTVTLRIRPSESSTGSSAEPSRRRPSMFFLPRLGVAACQGAGEV-EQSKPGA 200
P V G G + + S G+ EP + P + C G+ + KPG
Sbjct: 1342 PGVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRGKPGKDGKPGT 1401
Query: 201 VGPGG-----GGRGQAGP-----YPKL--------SPSDYSCM-----EHEQTVAVTSRP 237
GP G G +G+ GP P L SP+ ++ H QT A+ S P
Sbjct: 1402 PGPAGEKGNKGSKGEPGPAGSDGLPGLKGKRGDSGSPATWTTRGFVFTRHSQTTAIPSCP 1461
Query: 238 RG 239
G
Sbjct: 1462 EG 1463
>gi|89142733 alpha 3 type IV collagen isoform 2 precursor [Homo
sapiens]
Length = 1637
Score = 44.3 bits (103), Expect = 5e-04
Identities = 67/242 (27%), Positives = 86/242 (35%), Gaps = 44/242 (18%)
Query: 40 PSSPDVKGSCSVLGSTFLRKRPGSCCHPHPHRSPG---------RGGCGSLKQSCVSGPR 90
P P + G+ + G T R PGS P PG +G GS+ GP
Sbjct: 1224 PGPPGLPGAI-IPGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPP 1282
Query: 91 GMAAV-----RLGHGLRP--PGPRARQRFHRMATGWAVLGSPLGHPLRGCPPSPAAWPAP 143
G A RLG P PGPR F G+P G PP P P
Sbjct: 1283 GTAGDMGPPGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNP-GFLGSIGPPGPIGPKGP 1341
Query: 144 PAVGG--GCTVTLRIRPSESSTGSSAEPSRRRPSMFFLPRLGVAACQGAGEV-EQSKPGA 200
P V G G + + S G+ EP + P + C G+ + KPG
Sbjct: 1342 PGVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRGKPGKDGKPGT 1401
Query: 201 VGPGG-----GGRGQAGP-----YPKL--------SPSDYSCM-----EHEQTVAVTSRP 237
GP G G +G+ GP P L SP+ ++ H QT A+ S P
Sbjct: 1402 PGPAGEKGNKGSKGEPGPAGSDGLPGLKGKRGDSGSPATWTTRGFVFTRHSQTTAIPSCP 1461
Query: 238 RG 239
G
Sbjct: 1462 EG 1463
>gi|89142730 alpha 3 type IV collagen isoform 1 precursor [Homo
sapiens]
Length = 1670
Score = 44.3 bits (103), Expect = 5e-04
Identities = 67/242 (27%), Positives = 86/242 (35%), Gaps = 44/242 (18%)
Query: 40 PSSPDVKGSCSVLGSTFLRKRPGSCCHPHPHRSPG---------RGGCGSLKQSCVSGPR 90
P P + G+ + G T R PGS P PG +G GS+ GP
Sbjct: 1224 PGPPGLPGAI-IPGQTGNRGPPGSRGSPGAPGPPGPPGSHVIGIKGDKGSMGHPGPKGPP 1282
Query: 91 GMAAV-----RLGHGLRP--PGPRARQRFHRMATGWAVLGSPLGHPLRGCPPSPAAWPAP 143
G A RLG P PGPR F G+P G PP P P
Sbjct: 1283 GTAGDMGPPGRLGAPGTPGLPGPRGDPGFQGFPGVKGEKGNP-GFLGSIGPPGPIGPKGP 1341
Query: 144 PAVGG--GCTVTLRIRPSESSTGSSAEPSRRRPSMFFLPRLGVAACQGAGEV-EQSKPGA 200
P V G G + + S G+ EP + P + C G+ + KPG
Sbjct: 1342 PGVRGDPGTLKIISLPGSPGPPGTPGEPGMQGEPGPPGPPGNLGPCGPRGKPGKDGKPGT 1401
Query: 201 VGPGG-----GGRGQAGP-----YPKL--------SPSDYSCM-----EHEQTVAVTSRP 237
GP G G +G+ GP P L SP+ ++ H QT A+ S P
Sbjct: 1402 PGPAGEKGNKGSKGEPGPAGSDGLPGLKGKRGDSGSPATWTTRGFVFTRHSQTTAIPSCP 1461
Query: 238 RG 239
G
Sbjct: 1462 EG 1463
>gi|116008152 alpha 1 type XV collagen precursor [Homo sapiens]
Length = 1388
Score = 43.5 bits (101), Expect = 8e-04
Identities = 61/209 (29%), Positives = 76/209 (36%), Gaps = 21/209 (10%)
Query: 24 SGRGDCV---QLQVDPEMGPSSPDVKGSCSVLGSTFLRKRPGSCCHPHPHRSPGRGGCGS 80
SG GD V QL P P P + G G+ PGS P PG G
Sbjct: 605 SGSGDLVGSEQLLRGPPGPPGPPGLPGIPGKPGTDVFMGPPGSPGEDGPAGEPGPPGPEG 664
Query: 81 LKQSCVSGPRGMAAVRLGHGLRPPGPRARQRF---HRMATGWAVLGSPLGHPLRGCPPSP 137
Q V G G+ ++ G R P ++ +R G G P PP P
Sbjct: 665 --QPGVDGATGLPGMKGEKGARGPNGSVGEKGDPGNRGLPGPPGKKGQAGPPGVMGPPGP 722
Query: 138 AAWPAPPAVGGGCTVTLRIRPSESSTGSSA--EPSRRRPSMFFLPRLGVAACQG----AG 191
P PP G GCT+ L +E S + EP RP+ +G+ +G G
Sbjct: 723 PGPPGPP--GPGCTMGLGFEDTEGSGSTQLLNEPKLSRPT----AAIGLKGEKGDRGPKG 776
Query: 192 EVEQSKPGAVGPGGGGRGQAGPYPKLSPS 220
E VGP G RG G LS S
Sbjct: 777 ERGMDGASIVGP-PGPRGPPGHIKVLSNS 804
>gi|121114287 apoptosis-stimulating protein of p53, 1 [Homo sapiens]
Length = 1090
Score = 43.5 bits (101), Expect = 8e-04
Identities = 106/456 (23%), Positives = 159/456 (34%), Gaps = 93/456 (20%)
Query: 134 PPSPAAWPAPPAVGGGCTVTLRIRPSESSTGSSAE-PSRRRPSMFFLPRLGVAACQGAGE 192
PPS +P+P +G G T +L R S SA PSR+RP++ LP G G+ +
Sbjct: 459 PPSYGTYPSPTPLGPGSTSSLERRKEGSLPRPSAGLPSRQRPTL--LPATGSTPQPGSSQ 516
Query: 193 VEQSK----PGAVGPGGGGRGQAGPYPKLSPSDYSCMEHEQTVAVT-------SRPRG-- 239
Q + P P G P P+ S E TVA+ SRP+
Sbjct: 517 QIQQRISVPPSPTYPPAG--------PPAFPAGDSKPELPLTVAIRPFLADKGSRPQSPR 568
Query: 240 -----LSFHSISQQKLTQTAEPREPDADQRLPVTQNRKNPDHQTQRGRHWLSCTCGGEHE 294
++ SI L Q P+ P + N + G+ L G
Sbjct: 569 KGPQTVNSSSIYSMYLQQATPPKNYQ-----PAAHSALNKSVKAVYGKPVLP---SGSTS 620
Query: 295 NKELP-LHQSTGRLLSCRGKTKSRPTVGDTAEQP-------PPHQNFLQLQQQPLSIPK- 345
LP LH S G + +P T ++P P + ++ +PLS K
Sbjct: 621 PSPLPFLHGSLS-----TGTPQPQPPSESTEKEPEQDGPAAPADGSTVESLPRPLSPTKL 675
Query: 346 GPSIHT--RQQANPQ---------GCPRP-----QAGDPAGPTKGLKCPCLPTRRGHSRS 389
P +H+ R Q++ PRP +P GP L R
Sbjct: 676 TPIVHSPLRYQSDADLEALRRKLANAPRPLKKRSSITEPEGPGGPNIQKLLYQRFNTLAG 735
Query: 390 ALQKNRLHCPTEGPTNQTPYIKGTEGNGPGLG-----PQEEPPAPLTSQP-ERAGAGGSH 443
++ + P+ GN G P +P APL ++P + A +
Sbjct: 736 GMEGTPFYQPSPSQDFMGTLADVDNGNTNANGNLEELPPAQPTAPLPAEPAPSSDANDNE 795
Query: 444 GPDQLTGNLLCAPGQVQAAAMAPTSSQETYSVPWGRAGAGGSRGPDQLTGNLLCAPG--- 500
P L+C Q A A ++ +VP +Q+ + AP
Sbjct: 796 LPSPEPEELICPQTTHQTAEPAEDNNNNVATVP----------TTEQIPSPVAEAPSPGE 845
Query: 501 -QVPAAAVAPTSSQETYSVPQGRSSSQRARGKTPSS 535
QVP A + P S P S+++R K P+S
Sbjct: 846 EQVPPAPLPPASH------PPATSTNKRTNLKKPNS 875
>gi|71274172 ankyrin repeat domain 56 [Homo sapiens]
Length = 793
Score = 43.5 bits (101), Expect = 8e-04
Identities = 64/259 (24%), Positives = 93/259 (35%), Gaps = 44/259 (16%)
Query: 352 RQQANPQGCPRPQAGDPAGPTKGLKCPCLP--TRRGH--SRSALQKNRLHCPTEGPTNQT 407
R +G RP+ A P+ G PC P RRG + ++ R P E P
Sbjct: 78 RDLLGEEGLQRPREPPAAAPSAGGAAPCSPRGARRGEPPQQQPRRRRREKEPEEEPAGAA 137
Query: 408 PYIKGTEGNG---------PGLG------PQEEPPAPLTSQP-ERAGAGGSHGPDQ---- 447
NG PG G P + PP P + +A A + Q
Sbjct: 138 ARAADAACNGLPGSDSRRAPGKGGGSKGSPGQRPPVPAAAAAGAQARASCAAAKTQGRCC 197
Query: 448 ---LTGNLLCAPGQVQAAAMAPTSSQETYSVPWGRAGAGGSRGPDQLTGNLLCAPGQVPA 504
L NL PG++ A + T+ ++ + G SR ++ L P VPA
Sbjct: 198 WECLQNNLAVLPGELGALPHSATAEEKPARALPAQDDRGASREREE---GALAEPAPVPA 254
Query: 505 AAVAPTSSQETYSVPQGRSSSQRARGKTPS-SPTLSPSRGSPLLLREPSLVTDSLEAHRV 563
A +P ++ E + +R P+ P +P P LL SL +L+ +
Sbjct: 255 VAHSPPATVE----------AATSRASPPALLPGPAPRGDRPELLTPSSLHYSTLQQQQQ 304
Query: 564 NT---VAHADCTTHARDAG 579
T VA ARD G
Sbjct: 305 RTREWVARHPQVPEARDQG 323
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 43.1 bits (100), Expect = 0.001
Identities = 62/231 (26%), Positives = 80/231 (34%), Gaps = 32/231 (13%)
Query: 321 GDTAEQPPPHQNFLQLQQQPLSIPKGPSIHTRQQANPQGCPRPQAGDPAG-PTKGLKCPC 379
G+ PP N Q P P+GP Q PQG P P G P G P +G P
Sbjct: 34 GNPQGAPPQGGNKPQGPPSPPGKPQGPPPQGGNQ--PQG-PPPPPGKPQGPPPQGGNKPQ 90
Query: 380 LPTRRGHSRSALQKNRLHCPTEGPTNQTPYIKGTEGNGP----GLGPQEEPPAPLTSQ-P 434
P G + P +G +++P + GP G PQ PP P Q P
Sbjct: 91 GPPPPGKPQGP--------PPQGDKSRSPRSPPGKPQGPPPQGGNQPQGPPPPPGKPQGP 142
Query: 435 ERAGAGGSHGPDQLTGNLLCAPGQVQAAAMAPTSSQETYSVPWGRAGAGGSRGPDQLTGN 494
G GP PG+ Q P ++ S R+ G +GP GN
Sbjct: 143 PPQGGNKPQGPP--------PPGKPQGP--PPQGDNKSRS---SRSPPGKPQGPPPQGGN 189
Query: 495 LLCAPGQVPAAAVAPTSSQETYSVPQGRSSSQRARGKTPSSPTLSPSRGSP 545
P P P + + PQG + +G P S S SP
Sbjct: 190 QPQGPPPPPGKPQGP--PPQGGNKPQGPPPPGKPQGPPPQGDNKSQSARSP 238
Score = 41.2 bits (95), Expect = 0.004
Identities = 102/430 (23%), Positives = 134/430 (31%), Gaps = 100/430 (23%)
Query: 127 GHPLRGCPPSPAAWPAPPAVGGGCTVTLRIRPSESSTGSSAEPSRRRPSMFFLPRLGVAA 186
G+ +G PP P PP GG +P + + PR
Sbjct: 65 GNQPQGPPPPPGKPQGPPPQGGN-------KPQGPPPPGKPQGPPPQGDKSRSPRSPPGK 117
Query: 187 CQG----AGEVEQSKPGAVG------PGGGGRGQAGPYP--KLSPSDYSCMEHEQTVAVT 234
QG G Q P G P GG + Q P P P + + +
Sbjct: 118 PQGPPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGKPQGPPPQGDNKSRSSRSPP 177
Query: 235 SRPRGLSFHSISQQKLTQTAEPREPDADQRLPVTQNRKNPDHQTQRGRHWLSCTCGGEHE 294
+P+G Q Q P P + P Q P G+
Sbjct: 178 GKPQG-----PPPQGGNQPQGPPPPPGKPQGPPPQGGNKPQGPPPPGK------------ 220
Query: 295 NKELPLHQSTGRLLSCR---GKTKSRPTVGDTAEQPPPHQNFLQLQQQPLSIPKGPSIHT 351
+ P Q + S R GK + P G Q PP P P+GP
Sbjct: 221 -PQGPPPQGDNKSQSARSPPGKPQGPPPQGGNQPQGPP---------PPPGKPQGPP--- 267
Query: 352 RQQANPQGCPRPQAGDPAGPTKGLKCPCLPTRRGHSRSALQKNRLHCPTEGPTNQTPYIK 411
PQG +PQ P G +G P +G S+S ++ P +GP Q
Sbjct: 268 -----PQGGNKPQGPPPPGKPQG------PPPQGGSKSRSSRSPPGKP-QGPPPQ----- 310
Query: 412 GTEGNGPGLGPQEEPPAPLTSQ-PERAGAGGSHGPDQLTGNLLCAPGQVQAAAMAPTSSQ 470
G PQ PP P Q P G GP PG+ Q P
Sbjct: 311 ------GGNQPQGPPPPPGKPQGPPPQGGNKPQGPP--------PPGKPQGP--PPQGGS 354
Query: 471 ETYSVPWGRAGAGGSRGPDQLTGNLLCAP----GQVPAAAVAPTSSQETYSVPQGRSSSQ 526
++ S R+ G +GP Q GN P G P AP + Q PQG +
Sbjct: 355 KSRS---ARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQ-----PQG--PPR 404
Query: 527 RARGKTPSSP 536
+G PS P
Sbjct: 405 PPQGGRPSRP 414
>gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]
Length = 380
Score = 42.7 bits (99), Expect = 0.001
Identities = 45/159 (28%), Positives = 58/159 (36%), Gaps = 30/159 (18%)
Query: 327 PPPHQNFLQLQQQPLSIPKGPSIHT-RQQANPQGCPRPQAGDPAGPTKGLKCPCLPTRRG 385
P P + Q +QQP GPS H R+ +N G P P AG P P P P
Sbjct: 133 PSPEEVEQQKRQQP-----GPSEHIERRVSNAGGPPAPPAGGPPPPPGPPPPPGPPP--- 184
Query: 386 HSRSALQKNRLHCPTEGPTNQTPYIKGTEGNGPGLGPQEEPPAPLTSQPERAGAGGSHGP 445
P P + P +G G GP PP P P GAG
Sbjct: 185 -------------PPGLPPSGVP----AAAHGAGGGPPPAPPLPAAQGPGGGGAGAPGLA 227
Query: 446 DQLTGNLLCAPGQVQAAAMAPTSSQETYSVPWGRAGAGG 484
+ G L + + A+ PT+ + GR+G GG
Sbjct: 228 AAIAGAKLRKVSKQEEASGGPTAPK----AESGRSGGGG 262
Score = 30.8 bits (68), Expect = 5.6
Identities = 55/227 (24%), Positives = 75/227 (33%), Gaps = 60/227 (26%)
Query: 132 GCPPSPAAWPAPPAVGGGCTVTLRIRPSESSTGSSAEPSRRRPSMFFLPRLGV-AACQGA 190
G PP+P A PP G P P LP GV AA GA
Sbjct: 160 GGPPAPPAGGPPPPPG-------------------PPPPPGPPPPPGLPPSGVPAAAHGA 200
Query: 191 G---EVEQSKPGAVGPGGGGRGQAGPYPKLSPSDY-SCMEHEQTVAVTSRPRGLSFHS-- 244
G P A GPGGGG G G ++ + + E+ + P+ S S
Sbjct: 201 GGGPPPAPPLPAAQGPGGGGAGAPGLAAAIAGAKLRKVSKQEEASGGPTAPKAESGRSGG 260
Query: 245 -----------ISQQKLTQTAE--PREPDADQRLPVTQNRKNPDHQTQRGRHWLSCTCGG 291
++K TQ E P++ A+Q P + P R W
Sbjct: 261 GGLMEEMNAMLARRRKATQVGEKTPKDESANQEEP---EARVPAQSESVRRPW------- 310
Query: 292 EHENKELPLHQSTGRLLSCRGKTKSRPTVGDTAEQPPPHQNFLQLQQ 338
E + LP R K+ S T +T P ++ LQ+
Sbjct: 311 EKNSTTLP-----------RMKSSSSVTTSETQPCTPSSSDYSDLQR 346
>gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens]
Length = 753
Score = 42.7 bits (99), Expect = 0.001
Identities = 57/253 (22%), Positives = 81/253 (32%), Gaps = 35/253 (13%)
Query: 313 KTKSRPTVGDTAEQP------PPHQNFLQLQQQPLSIPKGPSIHTRQQANPQGCPRPQAG 366
K + R T + ++ P P H N P+ P++ + P P A
Sbjct: 286 KKRGRSTDSEVSQSPAKNGSKPVHSN---------QHPQSPAVPPTYPSGPP--PAASAL 334
Query: 367 DPAGPTKGLKCPCLPTRRGHSRSALQKNRLHCPTEGPTNQTPYIKGTEGNGPGLGPQEEP 426
G+ P P SAL P+ PY + P GP
Sbjct: 335 STTPGNNGVPAPAAPP------SALGPKASPAPSHNSGTPAPYAQAVAPPAPS-GPSTTQ 387
Query: 427 PAPLTSQPERAGAGGSHGPDQLTGNLLCAPGQV--QAAAMAPTSSQETYSVPWGRAGAGG 484
P P + QP G GGS G + + A G Q A + +S + +GG
Sbjct: 388 PRPPSVQPSGGGGGGSGGGGSSSSSNSSAGGGAGKQNGATSYSSVVADSPAEVALSSSGG 447
Query: 485 SRGPDQLTGNLLCAPGQVPAAAVAPTSSQETYSVPQGRSSSQRARGKTPSSPTLSPSRGS 544
+ Q G P P TS + + + P G G P+L
Sbjct: 448 NNASSQALG-----PPSGPHNPPPSTSKEPSAAAPTGAGGVAPGSGNNSGGPSLL----V 498
Query: 545 PLLLREPSLVTDS 557
PL + PS T S
Sbjct: 499 PLPVNPPSSPTPS 511
>gi|239757960 PREDICTED: hypothetical protein [Homo sapiens]
Length = 292
Score = 42.4 bits (98), Expect = 0.002
Identities = 51/188 (27%), Positives = 64/188 (34%), Gaps = 48/188 (25%)
Query: 88 GPRGMAAVRLGHGLRPP--------GPRARQRFHRMATGWAVLGSPLGHPLRGCPPSPAA 139
GPR A G G RP GP + R H HP PP +
Sbjct: 4 GPRPSAGAGAGAGRRPAARQVAPPGGPXSLARTHSRR-----------HPDHAPPPGRPS 52
Query: 140 WPAPPAVGGGCTVTLRIRPSESSTGSSAEPSRRRPSMFFLPRLGVAACQGAGEVEQSKPG 199
P G C T P + S AEP P + VAA +KPG
Sbjct: 53 CSRPLCAGSSCLAT----PEPARAPSIAEPG---------PGIPVAA---------AKPG 90
Query: 200 AVGPGGGGRGQAGPYPKLSPSDYSCMEHEQTVAVTSRPRGLSFHSISQQKL--TQTAEPR 257
+ GGG G P LSP+ C V V + P L + S + + Q
Sbjct: 91 VLPGGGGCTGARTENPPLSPTRGDC-----RVPVPAAPISLRWRSGREARPGGPQAGRAG 145
Query: 258 EPDADQRL 265
+P ADQ +
Sbjct: 146 DPKADQAM 153
>gi|160707881 formin 2 [Homo sapiens]
Length = 1722
Score = 41.6 bits (96), Expect = 0.003
Identities = 74/323 (22%), Positives = 105/323 (32%), Gaps = 31/323 (9%)
Query: 207 GRGQAGPYPKLSPSDYSCMEHEQTVAVTSRPRGLSFHSISQQKLTQTAEPREPDADQRLP 266
GR P + P C E +++ PR +S S Q ++P P + L
Sbjct: 765 GRPPCPPGAESGPQTKFCSE----ISLIVSPRRISVQLDSHQPTQSISQPPPPPS---LL 817
Query: 267 VTQNRKNPDHQTQRGRHWLSCTCGGEHENKELPLHQSTGRL-----LSCRGKTKSRPTVG 321
+ + P Q H +S HE+ +++ + L C + S P +G
Sbjct: 818 WSAGQGQPGSQPP---HSISTEFQTSHEHSVSSAFKNSCNIPSPPPLPCTESSSSMPGLG 874
Query: 322 DTAEQPPPHQNFLQLQQQPLSIPKGPSIHTRQQANPQGCPRPQAGDPAGPTKG----LKC 377
PPP +IP+ P + + P P P AG P P L
Sbjct: 875 MVPPPPPPLPGMTVPTLPSTAIPQPPPLQGTEMLPPPPPPLPGAGIPPPPPLPGAGILPL 934
Query: 378 PCLPTRRGHSRSALQKNRLHCPTEGPTNQTPYIKGTEGNG-------PGLGPQEEPPAP- 429
P LP L + P P P G G PG G PP P
Sbjct: 935 PPLPGAGIPPPPPLPGAAIPPPPPLPGAGIPLPPPLPGAGIPPPPPLPGAGIPPPPPLPG 994
Query: 430 --LTSQPERAGAGGSHGPDQLTGNLLCAPGQVQAAAMAPTSSQETYSVPWGRAGAG-GSR 486
+ P GA G P L G + P + A + P +P G G
Sbjct: 995 AGIPPPPPLPGA-GIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIPPPPPLPGAGIP 1053
Query: 487 GPDQLTGNLLCAPGQVPAAAVAP 509
P L G + P +P A + P
Sbjct: 1054 PPPPLPGAGIPPPPPLPGAGIPP 1076
>gi|55956910 meningioma 1 [Homo sapiens]
Length = 1320
Score = 41.6 bits (96), Expect = 0.003
Identities = 37/127 (29%), Positives = 52/127 (40%), Gaps = 9/127 (7%)
Query: 327 PPPHQNFLQL--QQQPLSIPKGPSIHTRQQANPQGCPRPQAGDPAGPTKGLK--CPCLPT 382
PPP Q Q QQQP P P + RQ + P PRPQ G+ P+ GL+ P LP+
Sbjct: 346 PPPQQQPPQQPPQQQP---PPPPGLLVRQNSCPPALPRPQQGEAGTPSGGLQDGGPMLPS 402
Query: 383 RRGHSRSALQK--NRLHCPTEGPTNQTPYIKGTEGNGPGLGPQEEPPAPLTSQPERAGAG 440
+ + + NR P P + + L + PP ++ R
Sbjct: 403 QHAQFEYPIHRLENRSMHPYSEPVFSMQHPPPQQAPNQRLQHFDAPPYMNVAKRPRFDFP 462
Query: 441 GSHGPDQ 447
GS G D+
Sbjct: 463 GSAGVDR 469
>gi|41281612 zinc finger protein 828 [Homo sapiens]
Length = 812
Score = 41.6 bits (96), Expect = 0.003
Identities = 74/328 (22%), Positives = 119/328 (36%), Gaps = 47/328 (14%)
Query: 226 EHEQTVAVTSRPRGLSFHSISQQKLTQTAEPREPDADQRLPVTQNRK----NPDHQTQRG 281
EH++ ++ P+ + S+ QKL P P P+ + +P+ QT
Sbjct: 113 EHQKIPCNSAEPKSIPALSMETQKLGSVLSPESPKPTPLTPLEPQKPGSVVSPELQTPLP 172
Query: 282 RHWLS--CTCGGEHENKELPLHQSTGRLLSCRGKTKSRPTVGDTAEQPPPHQNFLQLQQQ 339
S + K +P+ +S K P ++P P + +
Sbjct: 173 SPEPSKPASVSSPEPPKSVPVCES----------QKLAPVPSPEPQKPAPVSP--ESVKA 220
Query: 340 PLSIPKGPSIHTRQQANPQGCPRPQAGDPAGPTK-------GLKCPCLPTRRGHSRSALQ 392
LS PK +Q P+ P A P P G P R +R+
Sbjct: 221 TLSNPK----PQKQSHFPETLGPPSASSPESPVLAASPEPWGPSPAASPESRKSARTTSP 276
Query: 393 KNRLHCPTEGPTNQTPYIKGTEGNGPGLGPQEEPPAPLTSQPERAGAGGSHGPDQLTGNL 452
+ R P+E P P+ P + P+ PAP S P G P N
Sbjct: 277 EPRKPSPSESPEPWKPF--------PAVSPEPRRPAPAVS-PGSWKPGPPGSPRPWKSNP 327
Query: 453 LCAPGQVQAAAMAPTSSQETYSVPWGRAGAGGSRGPDQLTGNLLCAPGQVPAAAVAPTSS 512
+ G + A AP+ S PW + S GP + T ++ A + +++V+P+S
Sbjct: 328 SASSGPWKPAKPAPSVSPG----PW-KPIPSVSPGPWKPTPSVSSASWK--SSSVSPSSW 380
Query: 513 QETYSVPQGRSSSQRARGKTPSSPTLSP 540
+ + P+ S KT +PTLSP
Sbjct: 381 KSPPASPESWKSGPPELRKT--APTLSP 406
>gi|150170670 piccolo isoform 2 [Homo sapiens]
Length = 4935
Score = 41.6 bits (96), Expect = 0.003
Identities = 68/265 (25%), Positives = 93/265 (35%), Gaps = 36/265 (13%)
Query: 312 GKTKSRPTVGDTAEQPPPHQNFLQLQQQPLSIPKGPSIHTRQQANPQGCPRPQAGD---- 367
G KS+P QP L Q + P P T+ A P G +P A
Sbjct: 320 GHEKSQPGPAKPPAQPSGLTKPLAQQPGTVKPPVQPPGTTKPPAQPLGPAKPPAQQTGSE 379
Query: 368 -PAGPTKGLKCPCLPTRRGHSRSALQKNRLHCPTE-----GPTNQTPYIKG-TEGNGPGL 420
P+ G K P G + A Q PT+ P Q P ++ + GP
Sbjct: 380 KPSSEQPGPKALAQPPGVGKT-PAQQPGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTK 438
Query: 421 GPQEEP-PAPLTSQPERAG------AGGSHGPDQLTGNLLCAPGQVQAAAMAPTSSQETY 473
P ++P P + +Q G G + P QL G P Q A P Q+
Sbjct: 439 TPVQQPGPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPP---QQPG 495
Query: 474 SVPWGRAGAGGSRGPDQLTG---------NLLCAPGQVPAAAVAPTSSQETYSVPQGRSS 524
S G ++ P Q G P Q P +A P++ Q + + P + S
Sbjct: 496 SAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSA-KPSAQQPSPAKPSAQQS 554
Query: 525 ----SQRARGKTPSSPTLSPSRGSP 545
SQ GK PT+SPS P
Sbjct: 555 TKPVSQTGSGKPLQPPTVSPSAKQP 579
Score = 38.9 bits (89), Expect = 0.021
Identities = 101/438 (23%), Positives = 149/438 (34%), Gaps = 89/438 (20%)
Query: 185 AACQGAGEVEQSKPGAVGPGGGGRGQAGPYPKLSP-------SDYSCMEHEQTVAVTSRP 237
A+ +G G + + A GGG G P P S S E Q AV SR
Sbjct: 5 ASLEGEG-LPEGLAAAAAAGGGASGAGSPSHTAIPAGMEADLSQLSEEERRQIAAVMSRA 63
Query: 238 RGLSFHSISQQKLTQTAEPREPDADQRLPVTQNRKNPD--------------------HQ 277
+GL S+ + R+ + D P Q+ + PD Q
Sbjct: 64 QGLPKGSVPPAAAESPSMHRKQELDSSHPPKQSGRPPDPGRPAQPGLSKSRTTDTFRSEQ 123
Query: 278 TQRGRHWLSCT---------CGGEHENKELPLHQSTGRLLSCRGKTKSRPTVGD------ 322
GR + + EH++ +P S LS ++ D
Sbjct: 124 KLPGRSPSTISLKESKSRTDLKEEHKSSMMPGFLSEVNALSAVSSVVNKFNPFDLISDSE 183
Query: 323 -TAEQPPPHQNFLQ-------------LQQQ-PLSIPK--GPSIHTRQQ-ANPQGC---- 360
+ E+ Q +Q LQQQ P IPK GP QQ P+
Sbjct: 184 ASQEETTKKQKVVQKEQGKPEGIIKPPLQQQPPKPIPKQQGPGRDPLQQDGTPKSISSQQ 243
Query: 361 PRPQAGDPAGPTKGLKCPCLPTRRGHSRSALQKNRLHCPTEGPTNQTPYIKGTEGNGPGL 420
P P G K ++ P + H++ LQ++ + T Q ++G E P L
Sbjct: 244 PEKIKSQPPGTGKPIQGPTQTPQTDHAKLPLQRD----ASRPQTKQADIVRG-ESVKPSL 298
Query: 421 GPQEEPP-------APLTSQP--ERAGAGGSHGPDQ---LTGNLLCAPGQVQAAAMAPTS 468
+PP P QP E++ G + P Q LT L PG V+ P +
Sbjct: 299 PSPSKPPIQQPTPGKPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQPGTVKPPVQPPGT 358
Query: 469 SQETYSVPWGRAGAGGSRGPDQLTGNLLCAPGQV-PAAAVAPTSSQETYSVPQGRSSSQR 527
++ + P G A + P Q TG+ + Q P A P +T + G +
Sbjct: 359 TKPP-AQPLGPA-----KPPAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQQPGPAKPPT 412
Query: 528 ARGKTPSSPTLSPSRGSP 545
+ TP P SP
Sbjct: 413 QQVGTPKPLAQQPGLQSP 430
Score = 30.8 bits (68), Expect = 5.6
Identities = 62/287 (21%), Positives = 107/287 (37%), Gaps = 40/287 (13%)
Query: 213 PYPKLSPSDYSCMEHEQTVAVTSRPRGLSFHSISQQKLTQTAEPREPDADQRLPVTQ--N 270
P P PS S E ++ +P+ + ++ ++ +PD +Q
Sbjct: 732 PAPPKEPSVPS--EQDKAPVADDKPKQPKMVKPTTDLVSSSSATTKPDIPSSKVQSQAEE 789
Query: 271 RKNPDHQTQRGRHWLSCTCGGEH----ENKELPLHQSTGRLLSCRG---KTKSRPTVGDT 323
+ P +T + S GE ++K +P S +++S G ++K + V
Sbjct: 790 KTTPPLKTDSAKPSQSFPPTGEKVSPFDSKAIPRPASDSKIISHPGPSSESKGQKQVDPV 849
Query: 324 AEQPPPHQNFLQLQQQPLS--IPKGPSIHTRQQANPQGCPRPQAGDPAGPTKGLKCPCLP 381
++ P + ++ +P + +PKG P G PRP AG + P
Sbjct: 850 QKKEEPKKAQTKMSPKPDAKPMPKG-------SPTPPG-PRPTAGQTVPTPQQSPKPQEQ 901
Query: 382 TRRGH----SRSALQKNRLHCPTEGPT-----------NQTPYIKGTEGNGPGLGPQEEP 426
+RR S + K++ P E T +Q + T G PG Q P
Sbjct: 902 SRRFSLNLGSITDAPKSQPTTPQETVTGKLFGFGASIFSQASNLISTAGQ-PGPHSQSGP 960
Query: 427 PAPLTSQPERAGAGGSHGPDQLTGNLLCAPGQ---VQAAAMAPTSSQ 470
AP+ P + S GP + TG AP + V+ AP + +
Sbjct: 961 GAPMKQAPAPSQPPTSQGPPKSTGQAPPAPAKSIPVKKETKAPAAEK 1007
>gi|150378539 piccolo isoform 1 [Homo sapiens]
Length = 5142
Score = 41.6 bits (96), Expect = 0.003
Identities = 68/265 (25%), Positives = 93/265 (35%), Gaps = 36/265 (13%)
Query: 312 GKTKSRPTVGDTAEQPPPHQNFLQLQQQPLSIPKGPSIHTRQQANPQGCPRPQAGD---- 367
G KS+P QP L Q + P P T+ A P G +P A
Sbjct: 320 GHEKSQPGPAKPPAQPSGLTKPLAQQPGTVKPPVQPPGTTKPPAQPLGPAKPPAQQTGSE 379
Query: 368 -PAGPTKGLKCPCLPTRRGHSRSALQKNRLHCPTE-----GPTNQTPYIKG-TEGNGPGL 420
P+ G K P G + A Q PT+ P Q P ++ + GP
Sbjct: 380 KPSSEQPGPKALAQPPGVGKT-PAQQPGPAKPPTQQVGTPKPLAQQPGLQSPAKAPGPTK 438
Query: 421 GPQEEP-PAPLTSQPERAG------AGGSHGPDQLTGNLLCAPGQVQAAAMAPTSSQETY 473
P ++P P + +Q G G + P QL G P Q A P Q+
Sbjct: 439 TPVQQPGPGKIPAQQAGPGKTSAQQTGPTKPPSQLPGPAKPPPQQPGPAKPPP---QQPG 495
Query: 474 SVPWGRAGAGGSRGPDQLTG---------NLLCAPGQVPAAAVAPTSSQETYSVPQGRSS 524
S G ++ P Q G P Q P +A P++ Q + + P + S
Sbjct: 496 SAKPPSQQPGSTKPPPQQPGPAKPSPQQPGSTKPPSQQPGSA-KPSAQQPSPAKPSAQQS 554
Query: 525 ----SQRARGKTPSSPTLSPSRGSP 545
SQ GK PT+SPS P
Sbjct: 555 TKPVSQTGSGKPLQPPTVSPSAKQP 579
Score = 38.9 bits (89), Expect = 0.021
Identities = 101/438 (23%), Positives = 149/438 (34%), Gaps = 89/438 (20%)
Query: 185 AACQGAGEVEQSKPGAVGPGGGGRGQAGPYPKLSP-------SDYSCMEHEQTVAVTSRP 237
A+ +G G + + A GGG G P P S S E Q AV SR
Sbjct: 5 ASLEGEG-LPEGLAAAAAAGGGASGAGSPSHTAIPAGMEADLSQLSEEERRQIAAVMSRA 63
Query: 238 RGLSFHSISQQKLTQTAEPREPDADQRLPVTQNRKNPD--------------------HQ 277
+GL S+ + R+ + D P Q+ + PD Q
Sbjct: 64 QGLPKGSVPPAAAESPSMHRKQELDSSHPPKQSGRPPDPGRPAQPGLSKSRTTDTFRSEQ 123
Query: 278 TQRGRHWLSCT---------CGGEHENKELPLHQSTGRLLSCRGKTKSRPTVGD------ 322
GR + + EH++ +P S LS ++ D
Sbjct: 124 KLPGRSPSTISLKESKSRTDLKEEHKSSMMPGFLSEVNALSAVSSVVNKFNPFDLISDSE 183
Query: 323 -TAEQPPPHQNFLQ-------------LQQQ-PLSIPK--GPSIHTRQQ-ANPQGC---- 360
+ E+ Q +Q LQQQ P IPK GP QQ P+
Sbjct: 184 ASQEETTKKQKVVQKEQGKPEGIIKPPLQQQPPKPIPKQQGPGRDPLQQDGTPKSISSQQ 243
Query: 361 PRPQAGDPAGPTKGLKCPCLPTRRGHSRSALQKNRLHCPTEGPTNQTPYIKGTEGNGPGL 420
P P G K ++ P + H++ LQ++ + T Q ++G E P L
Sbjct: 244 PEKIKSQPPGTGKPIQGPTQTPQTDHAKLPLQRD----ASRPQTKQADIVRG-ESVKPSL 298
Query: 421 GPQEEPP-------APLTSQP--ERAGAGGSHGPDQ---LTGNLLCAPGQVQAAAMAPTS 468
+PP P QP E++ G + P Q LT L PG V+ P +
Sbjct: 299 PSPSKPPIQQPTPGKPPAQQPGHEKSQPGPAKPPAQPSGLTKPLAQQPGTVKPPVQPPGT 358
Query: 469 SQETYSVPWGRAGAGGSRGPDQLTGNLLCAPGQV-PAAAVAPTSSQETYSVPQGRSSSQR 527
++ + P G A + P Q TG+ + Q P A P +T + G +
Sbjct: 359 TKPP-AQPLGPA-----KPPAQQTGSEKPSSEQPGPKALAQPPGVGKTPAQQPGPAKPPT 412
Query: 528 ARGKTPSSPTLSPSRGSP 545
+ TP P SP
Sbjct: 413 QQVGTPKPLAQQPGLQSP 430
Score = 30.8 bits (68), Expect = 5.6
Identities = 62/287 (21%), Positives = 107/287 (37%), Gaps = 40/287 (13%)
Query: 213 PYPKLSPSDYSCMEHEQTVAVTSRPRGLSFHSISQQKLTQTAEPREPDADQRLPVTQ--N 270
P P PS S E ++ +P+ + ++ ++ +PD +Q
Sbjct: 732 PAPPKEPSVPS--EQDKAPVADDKPKQPKMVKPTTDLVSSSSATTKPDIPSSKVQSQAEE 789
Query: 271 RKNPDHQTQRGRHWLSCTCGGEH----ENKELPLHQSTGRLLSCRG---KTKSRPTVGDT 323
+ P +T + S GE ++K +P S +++S G ++K + V
Sbjct: 790 KTTPPLKTDSAKPSQSFPPTGEKVSPFDSKAIPRPASDSKIISHPGPSSESKGQKQVDPV 849
Query: 324 AEQPPPHQNFLQLQQQPLS--IPKGPSIHTRQQANPQGCPRPQAGDPAGPTKGLKCPCLP 381
++ P + ++ +P + +PKG P G PRP AG + P
Sbjct: 850 QKKEEPKKAQTKMSPKPDAKPMPKG-------SPTPPG-PRPTAGQTVPTPQQSPKPQEQ 901
Query: 382 TRRGH----SRSALQKNRLHCPTEGPT-----------NQTPYIKGTEGNGPGLGPQEEP 426
+RR S + K++ P E T +Q + T G PG Q P
Sbjct: 902 SRRFSLNLGSITDAPKSQPTTPQETVTGKLFGFGASIFSQASNLISTAGQ-PGPHSQSGP 960
Query: 427 PAPLTSQPERAGAGGSHGPDQLTGNLLCAPGQ---VQAAAMAPTSSQ 470
AP+ P + S GP + TG AP + V+ AP + +
Sbjct: 961 GAPMKQAPAPSQPPTSQGPPKSTGQAPPAPAKSIPVKKETKAPAAEK 1007
>gi|156416026 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 41.6 bits (96), Expect = 0.003
Identities = 73/312 (23%), Positives = 106/312 (33%), Gaps = 30/312 (9%)
Query: 218 SPSDYSCMEHEQTVAVTSRPRGLSFHSISQQKLTQT---AEPREPDADQ-RLPVTQNRKN 273
SP+ +E E+ + G + S Q T A P+ P + R P + +
Sbjct: 114 SPAARLLLELEERALLREARLGRARSSGGMQATPATEGLARPQAPSSSAFRCPYCKGKFR 173
Query: 274 PDHQTQRGRH-----WLSCTCGGEHENKELPLHQSTGRLLSCRGKTKSRPTVGDTAEQPP 328
+ +R H W C +E LH S L+ G + RP +A PP
Sbjct: 174 TSAERERHLHILHRPWKCGLCSFGSSQEEELLHHS----LTAHGAPE-RPLAATSAAPPP 228
Query: 329 PHQNFLQLQQQPLSIPK-GPSIHTRQQANPQGCPRPQAGDPAGPTKGLKCPCLPTR---- 383
Q Q +P S+P+ P ++A P P PA P +C
Sbjct: 229 QPQPQPPPQPEPRSVPQPEPEPEPEREATPTPAPAAPEEPPAPPE--FRCQVCGQSFTQS 286
Query: 384 ---RGHSRSALQKNRLHCPTEGPTNQTPYI--KGTEGNGPGLGPQEEP-PAPLTSQPERA 437
+GH R CP G + P+ + + LGP P PA ++ +
Sbjct: 287 WFLKGHMRKHKASFDHACPVCGRCFKEPWFLKNHMKVHASKLGPLRAPGPASGPARAPQP 346
Query: 438 GAGGSHGPDQLTGNLLCAPGQVQAAAMAPTSSQETYSVPWGRA---GAGGSRGPDQLTGN 494
G + L LL AP A P S S+ G G G GP + G
Sbjct: 347 PDLGLLAYEPLGPALLLAPAPTPAERREPPSLLGYLSLRAGEGRPNGEGAEPGPGRSFGG 406
Query: 495 LLCAPGQVPAAA 506
+PA A
Sbjct: 407 FRPLSSALPARA 418
Score = 32.7 bits (73), Expect = 1.5
Identities = 41/155 (26%), Positives = 51/155 (32%), Gaps = 23/155 (14%)
Query: 415 GNGPGLGPQEEPPAPLTSQPERAGAGGSHGPDQLTGNLLCAP---GQVQAAAMAPTSSQE 471
G GPG P+ PP+ S P+ + G P G + P S
Sbjct: 555 GAGPGPPPEPPPPSQRGSAPQSGAKPSPQPATWVEGASSPRPPSSGAGPGSRRKPASPGR 614
Query: 472 TYSVPWG----------RAGAGGSRGPDQLTGNLLCAPGQVPAAAVAPTSSQETYS---- 517
T G RAG GG GP L P A + Q +S
Sbjct: 615 TLRNGRGGEAEPLDLSLRAGPGGEAGPGGALHRCLFCPFATGAPELMALHLQVHHSRRAR 674
Query: 518 ---VPQGRSSSQRAR---GKTPSSPTLSPSRGSPL 546
PQ +S AR G+TP SP+ GS L
Sbjct: 675 GRRPPQADASPPYARVPSGETPPSPSQEGEEGSGL 709
>gi|156415998 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 41.6 bits (96), Expect = 0.003
Identities = 73/312 (23%), Positives = 106/312 (33%), Gaps = 30/312 (9%)
Query: 218 SPSDYSCMEHEQTVAVTSRPRGLSFHSISQQKLTQT---AEPREPDADQ-RLPVTQNRKN 273
SP+ +E E+ + G + S Q T A P+ P + R P + +
Sbjct: 114 SPAARLLLELEERALLREARLGRARSSGGMQATPATEGLARPQAPSSSAFRCPYCKGKFR 173
Query: 274 PDHQTQRGRH-----WLSCTCGGEHENKELPLHQSTGRLLSCRGKTKSRPTVGDTAEQPP 328
+ +R H W C +E LH S L+ G + RP +A PP
Sbjct: 174 TSAERERHLHILHRPWKCGLCSFGSSQEEELLHHS----LTAHGAPE-RPLAATSAAPPP 228
Query: 329 PHQNFLQLQQQPLSIPK-GPSIHTRQQANPQGCPRPQAGDPAGPTKGLKCPCLPTR---- 383
Q Q +P S+P+ P ++A P P PA P +C
Sbjct: 229 QPQPQPPPQPEPRSVPQPEPEPEPEREATPTPAPAAPEEPPAPPE--FRCQVCGQSFTQS 286
Query: 384 ---RGHSRSALQKNRLHCPTEGPTNQTPYI--KGTEGNGPGLGPQEEP-PAPLTSQPERA 437
+GH R CP G + P+ + + LGP P PA ++ +
Sbjct: 287 WFLKGHMRKHKASFDHACPVCGRCFKEPWFLKNHMKVHASKLGPLRAPGPASGPARAPQP 346
Query: 438 GAGGSHGPDQLTGNLLCAPGQVQAAAMAPTSSQETYSVPWGRA---GAGGSRGPDQLTGN 494
G + L LL AP A P S S+ G G G GP + G
Sbjct: 347 PDLGLLAYEPLGPALLLAPAPTPAERREPPSLLGYLSLRAGEGRPNGEGAEPGPGRSFGG 406
Query: 495 LLCAPGQVPAAA 506
+PA A
Sbjct: 407 FRPLSSALPARA 418
Score = 32.7 bits (73), Expect = 1.5
Identities = 41/155 (26%), Positives = 51/155 (32%), Gaps = 23/155 (14%)
Query: 415 GNGPGLGPQEEPPAPLTSQPERAGAGGSHGPDQLTGNLLCAP---GQVQAAAMAPTSSQE 471
G GPG P+ PP+ S P+ + G P G + P S
Sbjct: 555 GAGPGPPPEPPPPSQRGSAPQSGAKPSPQPATWVEGASSPRPPSSGAGPGSRRKPASPGR 614
Query: 472 TYSVPWG----------RAGAGGSRGPDQLTGNLLCAPGQVPAAAVAPTSSQETYS---- 517
T G RAG GG GP L P A + Q +S
Sbjct: 615 TLRNGRGGEAEPLDLSLRAGPGGEAGPGGALHRCLFCPFATGAPELMALHLQVHHSRRAR 674
Query: 518 ---VPQGRSSSQRAR---GKTPSSPTLSPSRGSPL 546
PQ +S AR G+TP SP+ GS L
Sbjct: 675 GRRPPQADASPPYARVPSGETPPSPSQEGEEGSGL 709
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.132 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,116,241
Number of Sequences: 37866
Number of extensions: 2802933
Number of successful extensions: 12206
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 604
Number of HSP's that attempted gapping in prelim test: 10695
Number of HSP's gapped (non-prelim): 2071
length of query: 864
length of database: 18,247,518
effective HSP length: 111
effective length of query: 753
effective length of database: 14,044,392
effective search space: 10575427176
effective search space used: 10575427176
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 66 (30.0 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.