Guide to the Human Genome
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Name: LOC727900 Sequence: fasta or formatted (192aa) NCBI GI: 239753765
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {206aa} PREDICTED: hypothetical protein
alt prot {206aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             1.6          3           1
 C cysteine            1.6          3           1
 D aspartate           5.2         10           1
 E glutamate           0.0          0           0
 F phenylalanine       5.2         10           2
 G glycine             2.1          4           1
 H histidine           9.4         18           1
 I isoleucine          5.2         10           1
 K lysine              2.6          5           1
 L leucine             6.8         13           2
 M methionine          3.6          7           1
 N asparagine          1.6          3           1
 P proline            14.1         27           2
 Q glutamine          11.5         22           1
 R arginine            1.0          2           1
 S serine             13.5         26           4
 T threonine           8.3         16           2
 V valine              6.8         13           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC727900             0.905   PREDICTED: hypothetical protein 
LOC727900             0.905   PREDICTED: hypothetical protein 
HIVEP3                0.045   human immunodeficiency virus type I enhancer bindin...
HIVEP3                0.045   human immunodeficiency virus type I enhancer bindin...
PLAC4                 0.039   placenta-specific 4 
C17orf63              0.037   hypothetical protein LOC55731 
C17orf63              0.037   hypothetical protein LOC55731 
FLJ10404              0.034   hypothetical protein LOC54540 
LOC100288786          0.032   PREDICTED: hypothetical protein XP_002343819 
RNF38                 0.026   ring finger protein 38 isoform 2 
RNF38                 0.026   ring finger protein 38 isoform 2 
RNF38                 0.026   ring finger protein 38 isoform 3 
RNF38                 0.026   ring finger protein 38 isoform 2 
RNF38                 0.026   ring finger protein 38 isoform 1 
SPRY4                 0.024   sprouty homolog 4 isoform 1 
ANKRD17               0.024   ankyrin repeat domain protein 17 isoform a 
ANKRD17               0.024   ankyrin repeat domain protein 17 isoform b 
SHANK3                0.024   SH3 and multiple ankyrin repeat domains 3 
NCOA6                 0.024   nuclear receptor coactivator 6 
LOC284297             0.021   hypothetical protein LOC284297 
TNRC6B                0.021   trinucleotide repeat containing 6B isoform 2 
TNRC6B                0.021   trinucleotide repeat containing 6B isoform 3 
TNRC6B                0.021   trinucleotide repeat containing 6B isoform 1 
LOC100133408          0.018   PREDICTED: similar to mucin 
ZC3H10                0.018   zinc finger CCCH-type containing 10 
SPRY4                 0.018   sprouty homolog 4 isoform 2 
DFNB31                0.018   CASK-interacting protein CIP98 isoform 2 
DFNB31                0.018   CASK-interacting protein CIP98 isoform 1 
TANC2                 0.018   tetratricopeptide repeat, ankyrin repeat and coiled...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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