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Search of human proteins with 239753746
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753746 PREDICTED: similar to BCL2-like 12 [Homo sapiens]
(218 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753746 PREDICTED: similar to BCL2-like 12 [Homo sapiens] 450 e-127
gi|239748229 PREDICTED: hypothetical protein XP_002346597 [Homo ... 450 e-127
gi|239742130 PREDICTED: hypothetical protein XP_002342439 [Homo ... 444 e-125
gi|20336330 BCL2-like 12 isoform 1 [Homo sapiens] 344 4e-95
gi|100913021 BCL2-like 12 isoform 3 [Homo sapiens] 337 4e-93
gi|95147555 microtubule-associated protein 1A [Homo sapiens] 38 0.008
gi|238908524 hypothetical protein LOC389333 [Homo sapiens] 36 0.022
gi|21361937 proline rich 7 (synaptic) [Homo sapiens] 36 0.029
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap... 35 0.049
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap... 35 0.049
gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens] 35 0.065
gi|169201198 PREDICTED: hypothetical protein [Homo sapiens] 35 0.065
gi|169188531 PREDICTED: hypothetical protein [Homo sapiens] 35 0.065
gi|149393138 hypothetical protein LOC84067 isoform 2 [Homo sapiens] 34 0.084
gi|4503293 DEAH (Asp-Glu-Ala-His) box polypeptide 16 [Homo sapiens] 33 0.14
gi|24308394 hypothetical protein LOC140893 [Homo sapiens] 33 0.14
gi|110611218 ribosome binding protein 1 [Homo sapiens] 33 0.25
gi|110611220 ribosome binding protein 1 [Homo sapiens] 33 0.25
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 33 0.25
gi|56118234 proline rich 6 [Homo sapiens] 33 0.25
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 33 0.25
gi|239749293 PREDICTED: hypothetical protein XP_002346984 [Homo ... 32 0.32
gi|239743383 PREDICTED: hypothetical protein XP_002342846 [Homo ... 32 0.32
gi|71043876 undifferentiated embryonic cell transcription factor... 32 0.32
gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo ... 32 0.42
gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo ... 32 0.42
gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens] 32 0.42
gi|226498192 atonal homolog 8 [Homo sapiens] 32 0.55
gi|55741571 leucine rich repeat and fibronectin type III domain ... 32 0.55
gi|194272140 dendrin [Homo sapiens] 32 0.55
>gi|239753746 PREDICTED: similar to BCL2-like 12 [Homo sapiens]
Length = 218
Score = 450 bits (1157), Expect = e-127
Identities = 218/218 (100%), Positives = 218/218 (100%)
Query: 1 MMTVGVEWRRWQVERRRWQWGPRSGASMAGSEELGLREDTLRVLAAFLRRGEAAGSPVPN 60
MMTVGVEWRRWQVERRRWQWGPRSGASMAGSEELGLREDTLRVLAAFLRRGEAAGSPVPN
Sbjct: 1 MMTVGVEWRRWQVERRRWQWGPRSGASMAGSEELGLREDTLRVLAAFLRRGEAAGSPVPN 60
Query: 61 PPRSPAQEEPTDFLSRLRRCLPCSLGRGAAPSESPRPWSLPIRPCYGSEPGPATPDFYAL 120
PPRSPAQEEPTDFLSRLRRCLPCSLGRGAAPSESPRPWSLPIRPCYGSEPGPATPDFYAL
Sbjct: 61 PPRSPAQEEPTDFLSRLRRCLPCSLGRGAAPSESPRPWSLPIRPCYGSEPGPATPDFYAL 120
Query: 121 VAQRLEQQEQLKSPPSKRISLASGFFARLVELFCSREDSSRPSRACPGSPPPSQEPLALA 180
VAQRLEQQEQLKSPPSKRISLASGFFARLVELFCSREDSSRPSRACPGSPPPSQEPLALA
Sbjct: 121 VAQRLEQQEQLKSPPSKRISLASGFFARLVELFCSREDSSRPSRACPGSPPPSQEPLALA 180
Query: 181 MELSRRVAELGDTRAGLSVEHAHSLTPWIQAHGGRVSR 218
MELSRRVAELGDTRAGLSVEHAHSLTPWIQAHGGRVSR
Sbjct: 181 MELSRRVAELGDTRAGLSVEHAHSLTPWIQAHGGRVSR 218
>gi|239748229 PREDICTED: hypothetical protein XP_002346597 [Homo
sapiens]
Length = 218
Score = 450 bits (1157), Expect = e-127
Identities = 218/218 (100%), Positives = 218/218 (100%)
Query: 1 MMTVGVEWRRWQVERRRWQWGPRSGASMAGSEELGLREDTLRVLAAFLRRGEAAGSPVPN 60
MMTVGVEWRRWQVERRRWQWGPRSGASMAGSEELGLREDTLRVLAAFLRRGEAAGSPVPN
Sbjct: 1 MMTVGVEWRRWQVERRRWQWGPRSGASMAGSEELGLREDTLRVLAAFLRRGEAAGSPVPN 60
Query: 61 PPRSPAQEEPTDFLSRLRRCLPCSLGRGAAPSESPRPWSLPIRPCYGSEPGPATPDFYAL 120
PPRSPAQEEPTDFLSRLRRCLPCSLGRGAAPSESPRPWSLPIRPCYGSEPGPATPDFYAL
Sbjct: 61 PPRSPAQEEPTDFLSRLRRCLPCSLGRGAAPSESPRPWSLPIRPCYGSEPGPATPDFYAL 120
Query: 121 VAQRLEQQEQLKSPPSKRISLASGFFARLVELFCSREDSSRPSRACPGSPPPSQEPLALA 180
VAQRLEQQEQLKSPPSKRISLASGFFARLVELFCSREDSSRPSRACPGSPPPSQEPLALA
Sbjct: 121 VAQRLEQQEQLKSPPSKRISLASGFFARLVELFCSREDSSRPSRACPGSPPPSQEPLALA 180
Query: 181 MELSRRVAELGDTRAGLSVEHAHSLTPWIQAHGGRVSR 218
MELSRRVAELGDTRAGLSVEHAHSLTPWIQAHGGRVSR
Sbjct: 181 MELSRRVAELGDTRAGLSVEHAHSLTPWIQAHGGRVSR 218
>gi|239742130 PREDICTED: hypothetical protein XP_002342439 [Homo
sapiens]
Length = 218
Score = 444 bits (1143), Expect = e-125
Identities = 216/218 (99%), Positives = 216/218 (99%)
Query: 1 MMTVGVEWRRWQVERRRWQWGPRSGASMAGSEELGLREDTLRVLAAFLRRGEAAGSPVPN 60
MMTVGVEWRRWQVERRRWQWGPRSGASMAGSEELGLREDTLRVLAAFLRRGEAAGSPVPN
Sbjct: 1 MMTVGVEWRRWQVERRRWQWGPRSGASMAGSEELGLREDTLRVLAAFLRRGEAAGSPVPN 60
Query: 61 PPRSPAQEEPTDFLSRLRRCLPCSLGRGAAPSESPRPWSLPIRPCYGSEPGPATPDFYAL 120
PPRS AQEEPTDFLSRLRRCLPCSLGRGAAPSESPRPWSLPIRPCYGSEPGPATPDFYAL
Sbjct: 61 PPRSHAQEEPTDFLSRLRRCLPCSLGRGAAPSESPRPWSLPIRPCYGSEPGPATPDFYAL 120
Query: 121 VAQRLEQQEQLKSPPSKRISLASGFFARLVELFCSREDSSRPSRACPGSPPPSQEPLALA 180
VAQRLEQQEQLKSPPSKRISLASGFFARLVELFCSREDSSRPSRACPG PPPSQEPLALA
Sbjct: 121 VAQRLEQQEQLKSPPSKRISLASGFFARLVELFCSREDSSRPSRACPGPPPPSQEPLALA 180
Query: 181 MELSRRVAELGDTRAGLSVEHAHSLTPWIQAHGGRVSR 218
MELSRRVAELGDTRAGLSVEHAHSLTPWIQAHGGRVSR
Sbjct: 181 MELSRRVAELGDTRAGLSVEHAHSLTPWIQAHGGRVSR 218
>gi|20336330 BCL2-like 12 isoform 1 [Homo sapiens]
Length = 334
Score = 344 bits (882), Expect = 4e-95
Identities = 186/257 (72%), Positives = 191/257 (74%), Gaps = 46/257 (17%)
Query: 4 VGVEWRRWQVERRRWQWGPRSGASMAGSEELGLREDTLRVLAAFLRRGEAAGSPVPNPPR 63
V V+WRR QVE RR +WGP GASMAGSEELGLREDTLRVLAAFLRRGEAAGSPVP PPR
Sbjct: 61 VRVQWRRPQVEWRRRRWGPGPGASMAGSEELGLREDTLRVLAAFLRRGEAAGSPVPTPPR 120
Query: 64 SPAQEEPTDFLSRLRRCLPCSLGRGAAPSESPRPWSLPIRPCYGSEPGPATPDFYALVAQ 123
SPAQEEPTDFLSRLRRCLPCSLGRGAAPSESPRP SLPIRPCYG EPGPATPDFYALVAQ
Sbjct: 121 SPAQEEPTDFLSRLRRCLPCSLGRGAAPSESPRPCSLPIRPCYGLEPGPATPDFYALVAQ 180
Query: 124 RLEQ--QEQLKSPP-----------------------------------------SKRIS 140
RLEQ QEQLKSPP SK +
Sbjct: 181 RLEQLVQEQLKSPPSPELQGPPSTEKEAILRRLVALLEEEAEVINQKLASDPALRSKLVR 240
Query: 141 LASGFFARLVELFCSREDSSRPSRACPGSPPPSQEP---LALAMELSRRVAELGDTRAGL 197
L+S FARLVELFCSR+DSSRPSRACPG PPPS EP LALAMELSRRVA LG T AGL
Sbjct: 241 LSSDSFARLVELFCSRDDSSRPSRACPGPPPPSPEPLARLALAMELSRRVAGLGGTLAGL 300
Query: 198 SVEHAHSLTPWIQAHGG 214
SVEH HS TPWIQAHGG
Sbjct: 301 SVEHVHSFTPWIQAHGG 317
>gi|100913021 BCL2-like 12 isoform 3 [Homo sapiens]
Length = 333
Score = 337 bits (865), Expect = 4e-93
Identities = 185/257 (71%), Positives = 190/257 (73%), Gaps = 47/257 (18%)
Query: 4 VGVEWRRWQVERRRWQWGPRSGASMAGSEELGLREDTLRVLAAFLRRGEAAGSPVPNPPR 63
V V+WRR QVE RR +WGP GASMAGSEELGLREDTLRVLAAFLRRGEAAGSPVP PP
Sbjct: 61 VRVQWRRPQVEWRRRRWGPGPGASMAGSEELGLREDTLRVLAAFLRRGEAAGSPVPTPP- 119
Query: 64 SPAQEEPTDFLSRLRRCLPCSLGRGAAPSESPRPWSLPIRPCYGSEPGPATPDFYALVAQ 123
SPAQEEPTDFLSRLRRCLPCSLGRGAAPSESPRP SLPIRPCYG EPGPATPDFYALVAQ
Sbjct: 120 SPAQEEPTDFLSRLRRCLPCSLGRGAAPSESPRPCSLPIRPCYGLEPGPATPDFYALVAQ 179
Query: 124 RLEQ--QEQLKSPP-----------------------------------------SKRIS 140
RLEQ QEQLKSPP SK +
Sbjct: 180 RLEQLVQEQLKSPPSPELQGPPSTEKEAILRRLVALLEEEAEVINQKLASDPALRSKLVR 239
Query: 141 LASGFFARLVELFCSREDSSRPSRACPGSPPPSQEP---LALAMELSRRVAELGDTRAGL 197
L+S FARLVELFCSR+DSSRPSRACPG PPPS EP LALAMELSRRVA LG T AGL
Sbjct: 240 LSSDSFARLVELFCSRDDSSRPSRACPGPPPPSPEPLARLALAMELSRRVAGLGGTLAGL 299
Query: 198 SVEHAHSLTPWIQAHGG 214
SVEH HS TPWIQAHGG
Sbjct: 300 SVEHVHSFTPWIQAHGG 316
>gi|95147555 microtubule-associated protein 1A [Homo sapiens]
Length = 2803
Score = 37.7 bits (86), Expect = 0.008
Identities = 37/135 (27%), Positives = 48/135 (35%), Gaps = 31/135 (22%)
Query: 59 PNPPRS------PAQEEPTDFLSRLRRCLPCSLGRGAAPSESPRPWSLPIRPCYGSEPGP 112
P PP S PA P D + LPC L A +E P P+ +P C + P
Sbjct: 2308 PAPPASLDLALAPAPSLPGDMGDGI---LPCHLECSEAATEKPSPFQVPSEDCAANGPTE 2364
Query: 113 ATPDFYALVAQRLEQQEQLKSPPSKRISLASGFFARLVELFCSREDSSRPSR-------A 165
+P+ + E +E P +R + G E SSRP
Sbjct: 2365 TSPNPPGPAPAKAENEEAAACPAWERGAWPEG-----------AERSSRPDTLLSPEQPV 2413
Query: 166 CP----GSPPPSQEP 176
CP G PP S P
Sbjct: 2414 CPAGGSGGPPSSASP 2428
>gi|238908524 hypothetical protein LOC389333 [Homo sapiens]
Length = 1015
Score = 36.2 bits (82), Expect = 0.022
Identities = 37/135 (27%), Positives = 58/135 (42%), Gaps = 19/135 (14%)
Query: 55 GSPVPNPPRSPAQEEPTDFLSRLRRCLPCSLGRGAAPSESPRPW-SLPIR------PCYG 107
GS + P + T + + P + +AP+++PRPW SL R P G
Sbjct: 272 GSTGRSEPETRETARSTHVVLEKAKSRPLRVRDNSAPAKAPRPWPSLRERAIRRDKPAPG 331
Query: 108 SEP-GPATPDFYALVAQRLEQQEQLKSP---PSKRISLASGFFARLVELFCSREDSSRPS 163
+EP GP + + +++++ + + P P + + A F R S PS
Sbjct: 332 TEPLGPVSSSIFLQSEEKIQEARKTRFPREAPDRTVQRARS------PPFECRIPSEVPS 385
Query: 164 RAC-PGSP-PPSQEP 176
RA P SP PP Q P
Sbjct: 386 RAVRPRSPSPPRQTP 400
>gi|21361937 proline rich 7 (synaptic) [Homo sapiens]
Length = 274
Score = 35.8 bits (81), Expect = 0.029
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 18/91 (19%)
Query: 92 SESPRPWSLPIRPCYGSEPGPATPDFYALVAQRLEQQEQLKSPP---SKRISLASGFFAR 148
S PRPWS P + +E + P Y E+ + PP S+ ++ G + +
Sbjct: 131 SVPPRPWSYPRQ----AESDMSKPPCY-------EEAVLMAEPPPPYSEVLTDTRGLYRK 179
Query: 149 LVELFCSREDSSRPSRACPGSPPPSQEPLAL 179
+V F SR DS+ PPPS +PL L
Sbjct: 180 IVTPFLSRRDSAEKQE----QPPPSYKPLFL 206
>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo
sapiens]
Length = 2462
Score = 35.0 bits (79), Expect = 0.049
Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 22/118 (18%)
Query: 51 GEAAGSPVPNPPRSPAQEEPTDFLSRLRRCLPCSLGRGAAPSESPRPWSLPIRPCYGSEP 110
G G P P P PA EPT P S G AP+ P P S S P
Sbjct: 760 GPPPGPPTPPPEDIPAPTEPT----------PASEATG-APTPPPAPPS-------PSAP 801
Query: 111 GPATP----DFYALVAQRLEQQEQLKSPPSKRISLASGFFARLVELFCSREDSSRPSR 164
P P + A +E+ E+ K P ++ +++ +G V+ C+ E P++
Sbjct: 802 PPVVPKEEKEEETAAAPPVEEGEEQKPPAAEELAVDTGKAEEPVKSECTEEAEEGPAK 859
>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo
sapiens]
Length = 2524
Score = 35.0 bits (79), Expect = 0.049
Identities = 32/118 (27%), Positives = 47/118 (39%), Gaps = 22/118 (18%)
Query: 51 GEAAGSPVPNPPRSPAQEEPTDFLSRLRRCLPCSLGRGAAPSESPRPWSLPIRPCYGSEP 110
G G P P P PA EPT P S G AP+ P P S S P
Sbjct: 777 GPPPGPPTPPPEDIPAPTEPT----------PASEATG-APTPPPAPPS-------PSAP 818
Query: 111 GPATP----DFYALVAQRLEQQEQLKSPPSKRISLASGFFARLVELFCSREDSSRPSR 164
P P + A +E+ E+ K P ++ +++ +G V+ C+ E P++
Sbjct: 819 PPVVPKEEKEEETAAAPPVEEGEEQKPPAAEELAVDTGKAEEPVKSECTEEAEEGPAK 876
>gi|34365793 WNK lysine deficient protein kinase 4 [Homo sapiens]
Length = 1243
Score = 34.7 bits (78), Expect = 0.065
Identities = 44/148 (29%), Positives = 53/148 (35%), Gaps = 28/148 (18%)
Query: 54 AGSPVPNPP-----RSPAQEEPTDFLSRLRRCLPCSLGRGAAPSESPRPWSLPIRPCYGS 108
AG P PP R + EP SRL R LG ++ WSLP P
Sbjct: 31 AGQPRLGPPPRRARRFSGKAEPRPRSSRLSRRSSVDLGLLSS-------WSLPASPA--- 80
Query: 109 EPGPATPDFYALVAQRLEQQEQLKSPPSKRISLASGFFARLVELFCSREDSSRP----SR 164
P P P A K PP + + A EDS+RP S
Sbjct: 81 -PDPPDPPDSAGPGPARSPPPSSKEPPEGTWTEGAPVKA--------AEDSARPELPDSA 131
Query: 165 ACPGSPPPSQEPLALAMELSRRVAELGD 192
PGS P + P A+A+E R E D
Sbjct: 132 VGPGSREPLRVPEAVALERRREQEEKED 159
>gi|169201198 PREDICTED: hypothetical protein [Homo sapiens]
Length = 105
Score = 34.7 bits (78), Expect = 0.065
Identities = 28/92 (30%), Positives = 33/92 (35%), Gaps = 3/92 (3%)
Query: 49 RRGEAAGSPVPNPPRSPAQEEPTDFLSR---LRRCLPCSLGRGAAPSESPRPWSLPIRPC 105
RR A P+P PP P EP L L+ + APS P P LP
Sbjct: 8 RRSRALSLPLPPPPPPPLLLEPLPLLEEPPGLQHVSERAGPAAPAPSTHPTPLPLPKPTP 67
Query: 106 YGSEPGPATPDFYALVAQRLEQQEQLKSPPSK 137
S PA L QL +PPS+
Sbjct: 68 GASRQAPAANPGKGTPPSGLHPHLQLPAPPSR 99
>gi|169188531 PREDICTED: hypothetical protein [Homo sapiens]
Length = 105
Score = 34.7 bits (78), Expect = 0.065
Identities = 28/92 (30%), Positives = 33/92 (35%), Gaps = 3/92 (3%)
Query: 49 RRGEAAGSPVPNPPRSPAQEEPTDFLSR---LRRCLPCSLGRGAAPSESPRPWSLPIRPC 105
RR A P+P PP P EP L L+ + APS P P LP
Sbjct: 8 RRSRALSLPLPPPPPPPLLLEPLPLLEEPPGLQHVSERAGPAAPAPSTHPTPLPLPKPTP 67
Query: 106 YGSEPGPATPDFYALVAQRLEQQEQLKSPPSK 137
S PA L QL +PPS+
Sbjct: 68 GASRQAPAANPGKGTPPSGLHPHLQLPAPPSR 99
>gi|149393138 hypothetical protein LOC84067 isoform 2 [Homo sapiens]
Length = 972
Score = 34.3 bits (77), Expect = 0.084
Identities = 30/98 (30%), Positives = 35/98 (35%), Gaps = 24/98 (24%)
Query: 14 ERRRWQWGPRSGASMAGSEELGLREDTLRVLAAFLRRGEAAGSPVPNPPRSPAQEEPTDF 73
E W GP S + + S R T LA FLR+ GS P P
Sbjct: 472 EHASWARGPGSPSVDSSSVTTVPRPSTPSRLALFLRQQSLGGSESPGP------------ 519
Query: 74 LSRLRRCLPCSLGRGAAPSESPRPWSLPIRPCYGSEPG 111
PCS G A+P+ SP RP EPG
Sbjct: 520 -------APCSPGLSASPASSPGR-----RPTPAEEPG 545
>gi|4503293 DEAH (Asp-Glu-Ala-His) box polypeptide 16 [Homo sapiens]
Length = 1041
Score = 33.5 bits (75), Expect = 0.14
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 6/81 (7%)
Query: 5 GVEWRRWQVER---RRWQWGPRSGASMAGSEELGLREDTLRVLAAFLRRGEAAGSPVPNP 61
G E RRW+ R ++G R AS +L L E+ F+R + G P+
Sbjct: 323 GEEQRRWEEARLGAASLKFGARDAASQEPKYQLVLEEEET---IEFVRATQLQGDEEPSA 379
Query: 62 PRSPAQEEPTDFLSRLRRCLP 82
P + Q + + + +RR LP
Sbjct: 380 PPTSTQAQQKESIQAVRRSLP 400
>gi|24308394 hypothetical protein LOC140893 [Homo sapiens]
Length = 664
Score = 33.5 bits (75), Expect = 0.14
Identities = 46/173 (26%), Positives = 65/173 (37%), Gaps = 25/173 (14%)
Query: 50 RGEAAGSPVPNP----PRSPAQEEPTDFLSRLRRCLPCSLGRGAAPSESP---------R 96
RG A G+P P P P SPA E S LR P ++ AP SP R
Sbjct: 236 RGPANGTPPPLPARSSPPSPAYERGLSLDSFLRASRPSAMTH-EAPKLSPKVDRLCLLNR 294
Query: 97 PWSLPIRPCYGSEPGPAT-------PDFYALVAQRLEQQEQLKSPPSKRISLASGFFARL 149
P SL ++ + S PA D A A+ E+ +L PS +
Sbjct: 295 PLSLHLQSPHSSPLAPAAAPSDPRLQDLKAREAEAWEEPTELLGLPSALAGMQDLRLEGA 354
Query: 150 VELFCSREDSSRPSRACP----GSPPPSQEPLALAMELSRRVAELGDTRAGLS 198
+ L +++ +RA G P P + +L + E TRA L+
Sbjct: 355 LHLLLAQQQLRARARAGSVRPRGQPTPGEMLPSLPVGSDSEGPENEGTRAALA 407
>gi|110611218 ribosome binding protein 1 [Homo sapiens]
Length = 977
Score = 32.7 bits (73), Expect = 0.25
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 31 SEELGLREDTLRVLAAFLRRGEAAGSPVPNPPRSPAQEEPTDFLSRL 77
S+EL L L + + + G+ AG+P +P PA+++P ++L
Sbjct: 815 SDELALVRQQLSEMKSHVEDGDIAGAPASSPEAPPAEQDPVQLKTQL 861
>gi|110611220 ribosome binding protein 1 [Homo sapiens]
Length = 977
Score = 32.7 bits (73), Expect = 0.25
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 31 SEELGLREDTLRVLAAFLRRGEAAGSPVPNPPRSPAQEEPTDFLSRL 77
S+EL L L + + + G+ AG+P +P PA+++P ++L
Sbjct: 815 SDELALVRQQLSEMKSHVEDGDIAGAPASSPEAPPAEQDPVQLKTQL 861
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 32.7 bits (73), Expect = 0.25
Identities = 39/138 (28%), Positives = 51/138 (36%), Gaps = 18/138 (13%)
Query: 57 PVPNPPRSPAQEEPTDFLSRLRRCLP----CSLGRGAAPSESPRPWSLPIRPCYGSEPGP 112
P P PP P+ P L L L C G GAA S RP LP P
Sbjct: 790 PQPPPPPPPS---PASLLKSLASVLEGQKYCYRGTGAA--VSTRPGPLPTTQYSPGPPSG 844
Query: 113 ATPDFYALVAQRLEQQEQLKSPPSKRISLASGFFARLVELFCSREDSSRPSRACPGSPPP 172
AT A + Q + S + S + G +AR R P PG P
Sbjct: 845 ATALPPTSAAPSAQGSPQPSASSSSQFSTSGGPWAR------ERRAGEEP---VPGPMTP 895
Query: 173 SQEPLALAMELSRRVAEL 190
+Q P L++ +R +E+
Sbjct: 896 TQPPPPLSLPPARSESEV 913
>gi|56118234 proline rich 6 [Homo sapiens]
Length = 272
Score = 32.7 bits (73), Expect = 0.25
Identities = 40/133 (30%), Positives = 53/133 (39%), Gaps = 14/133 (10%)
Query: 23 RSGASMA--GSEELGLREDTLRVLAAFLRRGEAAGSPVPNPPRSPAQEEPTDFLSRLRRC 80
RSGAS A S L R R AGS +S A E+P RLRR
Sbjct: 17 RSGASAAPAASAAAALAPSATRTR----RSASQAGS------KSQAVEKPPSEKPRLRRS 66
Query: 81 LPCSLGRGAAPSESPRPWSLPIRPCYGSEPGPATPDFYALVAQRLEQQEQLKSPPSKRIS 140
P + G P E P P + P P PATP A EQ+E+ ++ ++
Sbjct: 67 SPRAQEEG--PGEPPPPELALLPPPPPPPPTPATPTSSASNLDLGEQRERWETFQKRQKL 124
Query: 141 LASGFFARLVELF 153
+ G L++ F
Sbjct: 125 TSEGAAKLLLDTF 137
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 32.7 bits (73), Expect = 0.25
Identities = 42/172 (24%), Positives = 58/172 (33%), Gaps = 15/172 (8%)
Query: 9 RRWQVERRRWQWGPRSGASMAGSEELGLREDTLRVLAAFLRRGEAAGSPVPNPPRSPAQE 68
+R Q R+ Q SG+S + +E R RR + S P+P + +
Sbjct: 481 QRRQYRRQNQQSSSDSGSSSSSEDERPKRSHVKNGEVGRRRRHSPSRSASPSPRKRQKET 540
Query: 69 EPTDFLSRLRRCLPCSLGRGAAPSESPRPWSLPIRPCYGSEPGP------ATPDFYALVA 122
P R P R +P+ PR P P P P +P Y+
Sbjct: 541 SPRGRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPI 600
Query: 123 QRLEQQEQLKSPPSKRISLASGFFARLVELFCSREDSSRPSRACPGSPPPSQ 174
QR SPP KR + + + S P R SPPP Q
Sbjct: 601 QR----RYSPSPPPKRRTASPPPPPKR-----RASPSPPPKRRVSHSPPPKQ 643
>gi|239749293 PREDICTED: hypothetical protein XP_002346984 [Homo
sapiens]
Length = 585
Score = 32.3 bits (72), Expect = 0.32
Identities = 50/199 (25%), Positives = 68/199 (34%), Gaps = 37/199 (18%)
Query: 53 AAGSPVPNP-PRSPAQEEPTDFLSRLR---RCLPCSLGRGAAPSESPRPWSLPIRP---- 104
+ GSP P P S A R R PC+ G + PRPW +RP
Sbjct: 319 SVGSPCPAAEPVSQAGPPSPGHAGRPRGPEAARPCARGPPSQEPGPPRPWPCALRPRPRL 378
Query: 105 --------------------CYGSEPGPATP-----DFYALVAQRLEQQEQLKSPPSKRI 139
CY PG P + ++ +RL + QL P
Sbjct: 379 RAALPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHLQPVGAN 438
Query: 140 SLASGFFARLVELFCSREDSSRPSRACPGSPPPSQEPLALAMELSRRVAELGDT--RAGL 197
S+ AR + R +RA P PP Q+P A + S A G+ RAG
Sbjct: 439 SVERA--ARRRRTRPEPGPARRGARAEPPGPPTLQDPPASHLGSSPAQAPSGEAGRRAGG 496
Query: 198 SVEHAHSLTPWIQAHGGRV 216
A S + + GG +
Sbjct: 497 GAVGARSPGDVLGSGGGLI 515
>gi|239743383 PREDICTED: hypothetical protein XP_002342846 [Homo
sapiens]
Length = 585
Score = 32.3 bits (72), Expect = 0.32
Identities = 50/199 (25%), Positives = 68/199 (34%), Gaps = 37/199 (18%)
Query: 53 AAGSPVPNP-PRSPAQEEPTDFLSRLR---RCLPCSLGRGAAPSESPRPWSLPIRP---- 104
+ GSP P P S A R R PC+ G + PRPW +RP
Sbjct: 319 SVGSPCPAAEPVSQAGPPSPGHAGRPRGPEAARPCARGPPSQEPGPPRPWPCALRPRPRL 378
Query: 105 --------------------CYGSEPGPATP-----DFYALVAQRLEQQEQLKSPPSKRI 139
CY PG P + ++ +RL + QL P
Sbjct: 379 RAALPSRRLFSRGAAQQLPCCYKLHPGRHVPLRPFKEKHSEARRRLPEPRQLHLQPVGAN 438
Query: 140 SLASGFFARLVELFCSREDSSRPSRACPGSPPPSQEPLALAMELSRRVAELGDT--RAGL 197
S+ AR + R +RA P PP Q+P A + S A G+ RAG
Sbjct: 439 SVERA--ARRRRTRPEPGPARRGARAEPPGPPTLQDPPASHLGSSPAQAPSGEAGRRAGG 496
Query: 198 SVEHAHSLTPWIQAHGGRV 216
A S + + GG +
Sbjct: 497 GAVGARSPGDVLGSGGGLI 515
>gi|71043876 undifferentiated embryonic cell transcription factor 1
[Homo sapiens]
Length = 341
Score = 32.3 bits (72), Expect = 0.32
Identities = 39/148 (26%), Positives = 50/148 (33%), Gaps = 28/148 (18%)
Query: 50 RGEAAGSPVPNPPRSPAQEEPTDFLSRLRRCLPCSLGRGAAPSESPR-----PWSLPIRP 104
R + A PVPN +PA EP LP + R A P+ + R P S P
Sbjct: 164 RPQRARRPVPNA-HAPAPSEPD------ATPLPTARDRDADPTWTLRFSPSPPKSADASP 216
Query: 105 CYGSEPGPATPDFYALVAQRLEQQEQLKSPPSKRISLASGFFARLVELFCSREDSSRPSR 164
GS P PA + + SPP +RED P
Sbjct: 217 APGSPPAPAPTALATCIPEDRAPVRGPGSPPPPP----------------AREDPDSPPG 260
Query: 165 ACPGSPPPSQEPLALAMELSRRVAELGD 192
PP P +L L + + LGD
Sbjct: 261 RPEDCAPPPAAPPSLNTALLQTLGHLGD 288
>gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo
sapiens]
Length = 594
Score = 32.0 bits (71), Expect = 0.42
Identities = 35/115 (30%), Positives = 42/115 (36%), Gaps = 21/115 (18%)
Query: 12 QVERRRWQWGPRSGASMAGSEE-LGLREDTLRVLAAFLRRGEAAGSPVPN-------PPR 63
QV R WGP +G +G +G E R G A +P P+ P
Sbjct: 453 QVGSRGRGWGPGAGRVPSGGRRGVGNPE----------RWGGEAAAPRPSRVLLPELPAV 502
Query: 64 SPAQE---EPTDFLSRLRRCLPCSLGRGAAPSESPRPWSLPIRPCYGSEPGPATP 115
PA++ EP R G GA PS P P P G PGP TP
Sbjct: 503 DPARDTRREPDAAAQRTELGGRVGKGPGAPPSALPGPRPRPDSLSPGEPPGPPTP 557
>gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo
sapiens]
Length = 594
Score = 32.0 bits (71), Expect = 0.42
Identities = 35/115 (30%), Positives = 42/115 (36%), Gaps = 21/115 (18%)
Query: 12 QVERRRWQWGPRSGASMAGSEE-LGLREDTLRVLAAFLRRGEAAGSPVPN-------PPR 63
QV R WGP +G +G +G E R G A +P P+ P
Sbjct: 453 QVGSRGRGWGPGAGRVPSGGRRGVGNPE----------RWGGEAAAPRPSRVLLPELPAV 502
Query: 64 SPAQE---EPTDFLSRLRRCLPCSLGRGAAPSESPRPWSLPIRPCYGSEPGPATP 115
PA++ EP R G GA PS P P P G PGP TP
Sbjct: 503 DPARDTRREPDAAAQRTELGGRVGKGPGAPPSALPGPRPRPDSLSPGEPPGPPTP 557
>gi|46852161 methyl-CpG binding domain protein 6 [Homo sapiens]
Length = 1003
Score = 32.0 bits (71), Expect = 0.42
Identities = 46/171 (26%), Positives = 57/171 (33%), Gaps = 49/171 (28%)
Query: 47 FLRRGEAAGSPVPNPPRSPAQEEPT-DFLSRLRRCL-PCSLGRGAAPSESPRPWS----- 99
FL RG A SP P PP + + P+ ++ + LR L P LG AP S P S
Sbjct: 203 FLPRGNAP-SPAPPPPPAISLNAPSYNWGAALRSSLVPSDLGSPPAPHASSSPPSDPPLF 261
Query: 100 ----------------LPIRPCYGSEP-----------------------GPATPDFYAL 120
LP P S+P GP P F L
Sbjct: 262 HCSDALTPPPLPPSNNLPAHPGPASQPPVSSATMHLPLVLGPLGGAPTVEGPGAPPF--L 319
Query: 121 VAQRLEQQEQLKSPPSKRISLASGFFARLVELFCSREDSSRPSRACPGSPP 171
+ L + + PP S G R S S RPS+ P PP
Sbjct: 320 ASSLLSAAAKAQHPPLPPPSTLQGRRPRAQAPSASHSSSLRPSQRRPRRPP 370
>gi|226498192 atonal homolog 8 [Homo sapiens]
Length = 321
Score = 31.6 bits (70), Expect = 0.55
Identities = 34/132 (25%), Positives = 49/132 (37%), Gaps = 19/132 (14%)
Query: 22 PRSGASMAGSEELGLR----EDTLRVLAAFLRRGEAAGSPVPNPPRSPAQEEP------- 70
PR G AG E G R D + A G +P P PP +P + P
Sbjct: 86 PRGGTDTAG-ERGGSRAPEVSDARKRCFALGAVGPGLPTPPPPPPPAPQSQAPGGPEAQP 144
Query: 71 ---TDFLSRLRRCLPCSLGRGAAPSESPRPWSLPIRPCYGSEPGPATPDFYALVAQRLEQ 127
R+ C P + +AP P P +RP + PG ++ Y+ ++ +
Sbjct: 145 FREPGLRPRILLCAPPARPAPSAPPAPPAPPESTVRPAPPTRPGESS---YSSISHVIYN 201
Query: 128 QEQLKS-PPSKR 138
Q S P KR
Sbjct: 202 NHQDSSASPRKR 213
>gi|55741571 leucine rich repeat and fibronectin type III domain
containing 2 [Homo sapiens]
Length = 789
Score = 31.6 bits (70), Expect = 0.55
Identities = 18/52 (34%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 54 AGSPVPNPPRSPAQEEPTDFLSRLRRC----LPCSLGRGAAPSESPRPWSLP 101
AG+P PP+ + E DF + L R SLG G A PW +P
Sbjct: 592 AGAPPQGPPKVVVRNELLDFTASLARASDSSSSSSLGSGEAAGLGRAPWRIP 643
>gi|194272140 dendrin [Homo sapiens]
Length = 711
Score = 31.6 bits (70), Expect = 0.55
Identities = 30/117 (25%), Positives = 44/117 (37%), Gaps = 9/117 (7%)
Query: 14 ERRRWQWGPRSGASM-------AGSEELGLREDTLRVLAAFLRRGEAAGSPVPNPPRSPA 66
E W+ GP + A S+E +E + A R G P P P +P
Sbjct: 93 EATNWRAGPLAEVRAREQEKRKAASQEREAKETERKRRKAGGARRSPPGRPRPEPRNAPR 152
Query: 67 QEEPTDFLSRLRRCLPCSLGRGAAPSESPR--PWSLPIRPCYGSEPGPATPDFYALV 121
+ + LR +GR PS P+ P S P G PGP + + + L+
Sbjct: 153 VAQLAGLPAPLRPERLAPVGRAPRPSAQPQSDPGSAWAGPWGGRRPGPPSYEAHLLL 209
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.133 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,875,382
Number of Sequences: 37866
Number of extensions: 626075
Number of successful extensions: 3662
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 199
Number of HSP's that attempted gapping in prelim test: 3506
Number of HSP's gapped (non-prelim): 331
length of query: 218
length of database: 18,247,518
effective HSP length: 98
effective length of query: 120
effective length of database: 14,536,650
effective search space: 1744398000
effective search space used: 1744398000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.