Guide to the Human Genome
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Name: LOC100289095 Sequence: fasta or formatted (218aa) NCBI GI: 239742130
Description:

PREDICTED: hypothetical protein XP_002342439

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6         21           2
 C cysteine            2.3          5           1
 D aspartate           2.3          5           1
 E glutamate           8.3         18           2
 F phenylalanine       2.8          6           2
 G glycine             7.8         17           2
 H histidine           1.8          4           1
 I isoleucine          1.4          3           1
 K lysine              0.9          2           1
 L leucine            10.1         22           1
 M methionine          1.8          4           2
 N asparagine          0.5          1           1
 P proline            11.5         25           4
 Q glutamine           4.1          9           2
 R arginine           12.8         28           3
 S serine             11.0         24           2
 T threonine           2.8          6           1
 V valine              4.6         10           1
 W tryptophan          2.8          6           1
 Y tyrosine            0.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342439 
LOC100292964          0.984   PREDICTED: similar to BCL2-like 12 
LOC100290718          0.984   PREDICTED: hypothetical protein XP_002346597 
BCL2L12               0.746   BCL2-like 12 isoform 1 
BCL2L12               0.732   BCL2-like 12 isoform 3 
PRR7                  0.031   proline rich 7 (synaptic) 
LOC389333             0.028   hypothetical protein LOC389333 
MAP1A                 0.023   microtubule-associated protein 1A 
KDM6B                 0.023   lysine (K)-specific demethylase 6B 
MBD6                  0.023   methyl-CpG binding domain protein 6 
FAM160A2              0.021   hypothetical protein LOC84067 isoform 2 
SRRM1                 0.021   serine/arginine repetitive matrix 1 
WIPF1                 0.019   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.019   WAS/WASL interacting protein family, member 1 
DHX16                 0.019   DEAH (Asp-Glu-Ala-His) box polypeptide 16 
NHSL2                 0.019   NHS-like 2 
LOC100292175          0.019   PREDICTED: hypothetical protein 
CENPV                 0.019   proline rich 6 
WNK4                  0.019   WNK lysine deficient protein kinase 4 
RASGRP4               0.016   RAS guanyl releasing protein 4 isoform a 
RASGRP4               0.016   RAS guanyl releasing protein 4 isoform g 
RASGRP4               0.016   RAS guanyl releasing protein 4 isoform f 
RASGRP4               0.016   RAS guanyl releasing protein 4 isoform e 
RASGRP4               0.016   RAS guanyl releasing protein 4 isoform d 
RASGRP4               0.016   RAS guanyl releasing protein 4 isoform c 
RASGRP4               0.016   RAS guanyl releasing protein 4 isoform b 
LOC100291136          0.016   PREDICTED: hypothetical protein XP_002347630 
LOC100287129          0.016   PREDICTED: hypothetical protein XP_002343480 
LOC100290274          0.016   PREDICTED: hypothetical protein XP_002346984 
LOC100288645          0.016   PREDICTED: hypothetical protein XP_002342846 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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