Guide to the Human Genome
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Name: LOC100290718 Sequence: fasta or formatted (218aa) NCBI GI: 239748229
Description:

PREDICTED: hypothetical protein XP_002346597

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.6         21           2
 C cysteine            2.3          5           1
 D aspartate           2.3          5           1
 E glutamate           8.3         18           2
 F phenylalanine       2.8          6           2
 G glycine             7.8         17           2
 H histidine           1.4          3           1
 I isoleucine          1.4          3           1
 K lysine              0.9          2           1
 L leucine            10.1         22           1
 M methionine          1.8          4           2
 N asparagine          0.5          1           1
 P proline            11.5         25           3
 Q glutamine           4.1          9           2
 R arginine           12.8         28           3
 S serine             11.5         25           2
 T threonine           2.8          6           1
 V valine              4.6         10           1
 W tryptophan          2.8          6           1
 Y tyrosine            0.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346597 
LOC100292964          1.000   PREDICTED: similar to BCL2-like 12 
LOC100289095          0.986   PREDICTED: hypothetical protein XP_002342439 
BCL2L12               0.751   BCL2-like 12 isoform 1 
BCL2L12               0.734   BCL2-like 12 isoform 3 
MAP1A                 0.031   microtubule-associated protein 1A 
LOC389333             0.026   hypothetical protein LOC389333 
PRR7                  0.026   proline rich 7 (synaptic) 
NCOR2                 0.024   nuclear receptor co-repressor 2 isoform 2 
NCOR2                 0.024   nuclear receptor co-repressor 2 isoform 1 
WNK4                  0.024   WNK lysine deficient protein kinase 4 
LOC100132839          0.024   PREDICTED: hypothetical protein 
LOC100132839          0.024   PREDICTED: hypothetical protein 
FAM160A2              0.021   hypothetical protein LOC84067 isoform 2 
DHX16                 0.019   DEAH (Asp-Glu-Ala-His) box polypeptide 16 
C20orf151             0.019   hypothetical protein LOC140893 
RRBP1                 0.019   ribosome binding protein 1 
RRBP1                 0.019   ribosome binding protein 1 
KDM6B                 0.019   lysine (K)-specific demethylase 6B 
CENPV                 0.019   proline rich 6 
SRRM1                 0.019   serine/arginine repetitive matrix 1 
LOC100290274          0.016   PREDICTED: hypothetical protein XP_002346984 
LOC100288645          0.016   PREDICTED: hypothetical protein XP_002342846 
UTF1                  0.016   undifferentiated embryonic cell transcription factor...
LOC100290946          0.016   PREDICTED: hypothetical protein XP_002347121 
LOC100288840          0.016   PREDICTED: hypothetical protein XP_002344246 
MBD6                  0.016   methyl-CpG binding domain protein 6 
ATOH8                 0.016   atonal homolog 8 
LRFN2                 0.016   leucine rich repeat and fibronectin type III domain ...
DDN                   0.016   dendrin 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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