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Search of human proteins with 239753621
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753621 PREDICTED: hypothetical protein [Homo sapiens]
(93 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753621 PREDICTED: hypothetical protein [Homo sapiens] 208 9e-55
gi|239754674 PREDICTED: hypothetical protein [Homo sapiens] 30 0.42
gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens] 30 0.42
gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens] 30 0.42
gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens] 30 0.42
gi|13899269 SRY-box 7 [Homo sapiens] 30 0.55
gi|238624099 SET domain, bifurcated 2 isoform b [Homo sapiens] 29 0.71
gi|238624095 SET domain, bifurcated 2 isoform a [Homo sapiens] 29 0.71
gi|7019477 HtrA serine peptidase 2 isoform 1 preproprotein [Homo... 29 0.71
gi|21614538 HtrA serine peptidase 2 isoform 2 [Homo sapiens] 29 0.71
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ... 29 0.93
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ... 29 0.93
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens] 29 0.93
gi|239756124 PREDICTED: hypothetical protein [Homo sapiens] 28 1.6
gi|88759346 GATA zinc finger domain containing 1 [Homo sapiens] 28 1.6
gi|149588930 gastrulation brain homeo box 1 [Homo sapiens] 28 1.6
gi|4758168 distal-less homeobox 2 [Homo sapiens] 28 2.1
gi|205360962 polycystin 1 isoform 2 precursor [Homo sapiens] 28 2.1
gi|205360954 polycystin 1 isoform 1 precursor [Homo sapiens] 28 2.1
gi|239757235 PREDICTED: hypothetical protein [Homo sapiens] 28 2.1
gi|239751744 PREDICTED: hypothetical protein [Homo sapiens] 28 2.1
gi|51873049 hypothetical protein LOC8603 [Homo sapiens] 28 2.1
gi|139394621 chondroitin sulfate proteoglycan 5 (neuroglycan C) ... 27 2.7
gi|153945796 keratin associated protein 6-3 [Homo sapiens] 27 2.7
gi|66392157 RGD motif, leucine rich repeats, tropomodulin domain... 27 3.5
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 27 3.5
gi|153281158 dual specificity phosphatase 8 [Homo sapiens] 27 3.5
gi|239753887 PREDICTED: hypothetical protein [Homo sapiens] 27 4.6
gi|4502365 NK3 homeobox 2 [Homo sapiens] 27 4.6
gi|61743980 stabilin 2 precursor [Homo sapiens] 26 6.0
>gi|239753621 PREDICTED: hypothetical protein [Homo sapiens]
Length = 93
Score = 208 bits (529), Expect = 9e-55
Identities = 93/93 (100%), Positives = 93/93 (100%)
Query: 1 MGFKEWDLMSTADPVKWLKQSATRSPKGSDYRSPLTCWGARCRDCTDRGPRGCHHGGEVL 60
MGFKEWDLMSTADPVKWLKQSATRSPKGSDYRSPLTCWGARCRDCTDRGPRGCHHGGEVL
Sbjct: 1 MGFKEWDLMSTADPVKWLKQSATRSPKGSDYRSPLTCWGARCRDCTDRGPRGCHHGGEVL 60
Query: 61 SCTGWGGGAGPTSHMTSSSALPPPSQRSTSRGA 93
SCTGWGGGAGPTSHMTSSSALPPPSQRSTSRGA
Sbjct: 61 SCTGWGGGAGPTSHMTSSSALPPPSQRSTSRGA 93
>gi|239754674 PREDICTED: hypothetical protein [Homo sapiens]
Length = 480
Score = 30.0 bits (66), Expect = 0.42
Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 13/55 (23%)
Query: 39 GARCRDCTDRGPRGCHHGGEVLSCTGWGGGAGPTSHMTSSSALPPPSQRSTSRGA 93
G RCR C R RG GGG G +H T A PP + GA
Sbjct: 334 GERCRFCRRRRRRG-------------GGGEGEGTHATHGPASPPGRRHDEEVGA 375
>gi|239749251 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 30.0 bits (66), Expect = 0.42
Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 13/55 (23%)
Query: 39 GARCRDCTDRGPRGCHHGGEVLSCTGWGGGAGPTSHMTSSSALPPPSQRSTSRGA 93
G RCR C R RG GGG G +H T A PP + GA
Sbjct: 314 GERCRFCRRRRRRG-------------GGGEGEGTHATHGPASPPGRRHDEEVGA 355
>gi|239743343 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 30.0 bits (66), Expect = 0.42
Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 13/55 (23%)
Query: 39 GARCRDCTDRGPRGCHHGGEVLSCTGWGGGAGPTSHMTSSSALPPPSQRSTSRGA 93
G RCR C R RG GGG G +H T A PP + GA
Sbjct: 314 GERCRFCRRRRRRG-------------GGGEGEGTHATHGPASPPGRRHDEEVGA 355
>gi|239509031 PREDICTED: similar to hCG2042508 [Homo sapiens]
Length = 460
Score = 30.0 bits (66), Expect = 0.42
Identities = 19/55 (34%), Positives = 21/55 (38%), Gaps = 13/55 (23%)
Query: 39 GARCRDCTDRGPRGCHHGGEVLSCTGWGGGAGPTSHMTSSSALPPPSQRSTSRGA 93
G RCR C R RG GGG G +H T A PP + GA
Sbjct: 314 GERCRFCRRRRRRG-------------GGGEGEGTHATHGPASPPGRRHDEEVGA 355
>gi|13899269 SRY-box 7 [Homo sapiens]
Length = 388
Score = 29.6 bits (65), Expect = 0.55
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 51 RGCHHGGEVLSCTGWGGGAGPTSHMTSSSALPPPSQRS 88
RGC+H G G GGG P+S T LP P + S
Sbjct: 175 RGCYHEGPA----GGGGGGTPSSVDTYPYGLPTPPEMS 208
>gi|238624099 SET domain, bifurcated 2 isoform b [Homo sapiens]
Length = 707
Score = 29.3 bits (64), Expect = 0.71
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 38 WGARCRDCTDRGPRGCHHGGEVLS 61
WG RC D DRG C + G +LS
Sbjct: 367 WGVRCLDDIDRGTFVCIYSGRLLS 390
>gi|238624095 SET domain, bifurcated 2 isoform a [Homo sapiens]
Length = 719
Score = 29.3 bits (64), Expect = 0.71
Identities = 12/24 (50%), Positives = 14/24 (58%)
Query: 38 WGARCRDCTDRGPRGCHHGGEVLS 61
WG RC D DRG C + G +LS
Sbjct: 379 WGVRCLDDIDRGTFVCIYSGRLLS 402
>gi|7019477 HtrA serine peptidase 2 isoform 1 preproprotein [Homo
sapiens]
Length = 458
Score = 29.3 bits (64), Expect = 0.71
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 56 GGEVLSCTGWGGGAGPTSHMTSSSALPPPSQRS 88
GG VL WGGG GP + + + + PP S RS
Sbjct: 114 GGAVLLLL-WGGGRGPPAVLAAVPSPPPASPRS 145
>gi|21614538 HtrA serine peptidase 2 isoform 2 [Homo sapiens]
Length = 361
Score = 29.3 bits (64), Expect = 0.71
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 56 GGEVLSCTGWGGGAGPTSHMTSSSALPPPSQRS 88
GG VL WGGG GP + + + + PP S RS
Sbjct: 114 GGAVLLLL-WGGGRGPPAVLAAVPSPPPASPRS 145
>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
Length = 384
Score = 28.9 bits (63), Expect = 0.93
Identities = 22/70 (31%), Positives = 24/70 (34%), Gaps = 13/70 (18%)
Query: 20 QSATRSPKGSDYRSPLTCWGARCRDCTDRGPRGCHHGGEVL-----------SCTGWGGG 68
Q R + PLTC RCR R R G L SC WG G
Sbjct: 169 QVGARPSRAGGQPPPLTC--RRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSG 226
Query: 69 AGPTSHMTSS 78
GP + SS
Sbjct: 227 GGPGTAAASS 236
>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
sapiens]
Length = 384
Score = 28.9 bits (63), Expect = 0.93
Identities = 22/70 (31%), Positives = 24/70 (34%), Gaps = 13/70 (18%)
Query: 20 QSATRSPKGSDYRSPLTCWGARCRDCTDRGPRGCHHGGEVL-----------SCTGWGGG 68
Q R + PLTC RCR R R G L SC WG G
Sbjct: 169 QVGARPSRAGGQPPPLTC--RRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSG 226
Query: 69 AGPTSHMTSS 78
GP + SS
Sbjct: 227 GGPGTAAASS 236
>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 28.9 bits (63), Expect = 0.93
Identities = 22/70 (31%), Positives = 24/70 (34%), Gaps = 13/70 (18%)
Query: 20 QSATRSPKGSDYRSPLTCWGARCRDCTDRGPRGCHHGGEVL-----------SCTGWGGG 68
Q R + PLTC RCR R R G L SC WG G
Sbjct: 169 QVGARPSRAGGQPPPLTC--RRCRAAPRRSARPFRRPGLPLKSRPGSGTGARSCGTWGSG 226
Query: 69 AGPTSHMTSS 78
GP + SS
Sbjct: 227 GGPGTAAASS 236
>gi|239756124 PREDICTED: hypothetical protein [Homo sapiens]
Length = 348
Score = 28.1 bits (61), Expect = 1.6
Identities = 27/84 (32%), Positives = 34/84 (40%), Gaps = 16/84 (19%)
Query: 18 LKQSATRSPKGSDYRSPLTCWGARCRDCTDRGPRG------CHHGGEVLSCTGWGGGAGP 71
L Q+A SP+GS GA G RG C+ GG SC W AGP
Sbjct: 157 LPQAARSSPRGSKLS------GAASPTAIFPGTRGSGRGGGCNCGGGSCSCCRW-SMAGP 209
Query: 72 ---TSHMTSSSALPPPSQRSTSRG 92
T ++L PP + T+ G
Sbjct: 210 FPCARRATCLASLSPPPKLPTAPG 233
>gi|88759346 GATA zinc finger domain containing 1 [Homo sapiens]
Length = 269
Score = 28.1 bits (61), Expect = 1.6
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 42 CRDCTDRGPRGCHHGGEVLS--CTGWGGGAGPTSHMTSSSALPPPS 85
C CT RG G G + G GGG + S+SA PP S
Sbjct: 30 CHHCTGRGGAGSGGAGSGAAGGTGGSGGGGFGAATFASTSATPPQS 75
>gi|149588930 gastrulation brain homeo box 1 [Homo sapiens]
Length = 363
Score = 28.1 bits (61), Expect = 1.6
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 56 GGEVLSCTGWGGGAGPTSHMTSSSALPPPSQRS 88
GG G GGG GP + + S + PP RS
Sbjct: 6 GGSAPGGNGGGGGGGPGTAFSIDSLIGPPPPRS 38
>gi|4758168 distal-less homeobox 2 [Homo sapiens]
Length = 328
Score = 27.7 bits (60), Expect = 2.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 66 GGGAGPTSHMTSSSALPPPSQRST 89
GGGAGP + +SSS+L P + T
Sbjct: 32 GGGAGPGGNSSSSSSLHKPQESPT 55
>gi|205360962 polycystin 1 isoform 2 precursor [Homo sapiens]
Length = 4302
Score = 27.7 bits (60), Expect = 2.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 58 EVLSCTGWGGGAGPTSHM 75
E+L TGWG G+G T+H+
Sbjct: 3121 EILVKTGWGRGSGTTAHV 3138
>gi|205360954 polycystin 1 isoform 1 precursor [Homo sapiens]
Length = 4303
Score = 27.7 bits (60), Expect = 2.1
Identities = 10/18 (55%), Positives = 14/18 (77%)
Query: 58 EVLSCTGWGGGAGPTSHM 75
E+L TGWG G+G T+H+
Sbjct: 3121 EILVKTGWGRGSGTTAHV 3138
>gi|239757235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 352
Score = 27.7 bits (60), Expect = 2.1
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 23 TRSPKGSDYRSPLTCWGARCRDCTDRGPRGCHHGGEVLSCTGWG-----GGAGPTSHMTS 77
T P+ ++ R P T C D RG G V S T WG G GP ++
Sbjct: 143 TNVPEAANRRHPKTTLPKGLCGCADLVRRGQTGHGFVSSLTAWGRRPRAGQLGPCANCPG 202
Query: 78 SSALPPPSQRSTSRG 92
+ + P + + ++G
Sbjct: 203 AHSRPLVNDTTRNQG 217
>gi|239751744 PREDICTED: hypothetical protein [Homo sapiens]
Length = 352
Score = 27.7 bits (60), Expect = 2.1
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 23 TRSPKGSDYRSPLTCWGARCRDCTDRGPRGCHHGGEVLSCTGWG-----GGAGPTSHMTS 77
T P+ ++ R P T C D RG G V S T WG G GP ++
Sbjct: 143 TNVPEAANRRHPKTTLPKGLCGCADLVRRGQTGHGFVSSLTAWGRRPRAGQLGPCANCPG 202
Query: 78 SSALPPPSQRSTSRG 92
+ + P + + ++G
Sbjct: 203 AHSRPLVNDTTRNQG 217
>gi|51873049 hypothetical protein LOC8603 [Homo sapiens]
Length = 1224
Score = 27.7 bits (60), Expect = 2.1
Identities = 16/46 (34%), Positives = 18/46 (39%), Gaps = 12/46 (26%)
Query: 56 GGEVLSCTGWGGGA------------GPTSHMTSSSALPPPSQRST 89
G EV++ W G GPT T ALPPPS T
Sbjct: 532 GSEVMNDKNWNPGTFLPDTISGSEILGPTLSETRPEALPPPSSNET 577
>gi|139394621 chondroitin sulfate proteoglycan 5 (neuroglycan C)
precursor [Homo sapiens]
Length = 539
Score = 27.3 bits (59), Expect = 2.7
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 25 SPKGSDYRSPLTCWGARCRDCTDRGPRGCHHGGE 58
S G++ RS CR D P CH+GG+
Sbjct: 353 SENGTECRSGFVRHNGSCRSVCDLFPSYCHNGGQ 386
>gi|153945796 keratin associated protein 6-3 [Homo sapiens]
Length = 110
Score = 27.3 bits (59), Expect = 2.7
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 21 SATRSPKGSDYRSPLTCWGARCRDCTDRGPRGCHHGGEVLSCTGWGG 67
S T + GS YR+ G C G GC +GG C G+GG
Sbjct: 3 STTNTMCGSYYRNYN---GGHGYGCCGYGGLGCGYGGCGYGCCGYGG 46
>gi|66392157 RGD motif, leucine rich repeats, tropomodulin domain
and proline-rich containing [Homo sapiens]
Length = 1435
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Query: 51 RGCHHGGEVLSCTGW---GGGAGPTSHMTSSSALPPPSQRSTSRG 92
RGC GG + W GG GP + + +S LPP + SRG
Sbjct: 385 RGCSVGGWMTGRADWRAGRGGLGPPAGVANS--LPPQLFAAVSRG 427
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 26.9 bits (58), Expect = 3.5
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 72 TSHMTSSSALPPPSQRSTSRG 92
T H +SSSA PPP ++ +G
Sbjct: 156 TKHWSSSSASPPPKKKKKKKG 176
>gi|153281158 dual specificity phosphatase 8 [Homo sapiens]
Length = 625
Score = 26.9 bits (58), Expect = 3.5
Identities = 21/65 (32%), Positives = 23/65 (35%), Gaps = 3/65 (4%)
Query: 24 RSPKGSDYRSPLTCWGARCRDCTDRGPRGCHHGGEVLSCTGWGGGAGPTSHMTSSSALPP 83
R P GS RSP G D + PR HG LS G G P + L
Sbjct: 458 RPPAGSPARSPAHSLGLNFGDAARQTPR---HGLSALSAPGLPGPGQPAGPGAWAPPLDS 514
Query: 84 PSQRS 88
P S
Sbjct: 515 PGTPS 519
>gi|239753887 PREDICTED: hypothetical protein [Homo sapiens]
Length = 127
Score = 26.6 bits (57), Expect = 4.6
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 3/36 (8%)
Query: 19 KQSATRSPKGSDYRSPLTCWGARCRDCTDRGPRGCH 54
++ A P +D+R T W R R GPRG H
Sbjct: 8 RREAGAGPGEADFR---TIWACRGRQEAQAGPRGAH 40
>gi|4502365 NK3 homeobox 2 [Homo sapiens]
Length = 333
Score = 26.6 bits (57), Expect = 4.6
Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 49 GPRGCHHGGEVLSCTGWGGGAGP--TSHMTSSSALPPPSQRSTSRGA 93
GPRG H + S G GGG+GP + A P P ++ SR A
Sbjct: 168 GPRGAHVSA-LCSGAGGGGGSGPAGVAEEEEEPAAPKP-RKKRSRAA 212
>gi|61743980 stabilin 2 precursor [Homo sapiens]
Length = 2551
Score = 26.2 bits (56), Expect = 6.0
Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 8/63 (12%)
Query: 37 CWGARCRD------CTDRGP--RGCHHGGEVLSCTGWGGGAGPTSHMTSSSALPPPSQRS 88
CW R C+D G G G+ L TGW G + T + + PP S +
Sbjct: 2000 CWPGRFGPDCLPCGCSDHGQCDDGITGSGQCLCETGWTGPSCDTQAVLPAVCTPPCSAHA 2059
Query: 89 TSR 91
T +
Sbjct: 2060 TCK 2062
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.131 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,861,725
Number of Sequences: 37866
Number of extensions: 235017
Number of successful extensions: 1135
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1100
Number of HSP's gapped (non-prelim): 54
length of query: 93
length of database: 18,247,518
effective HSP length: 64
effective length of query: 29
effective length of database: 15,824,094
effective search space: 458898726
effective search space used: 458898726
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.