Guide to the Human Genome
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Name: LOC100292331 Sequence: fasta or formatted (93aa) NCBI GI: 239753621
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5          6           1
 C cysteine            5.4          5           1
 D aspartate           5.4          5           1
 E glutamate           2.2          2           1
 F phenylalanine       1.1          1           1
 G glycine            14.0         13           3
 H histidine           3.2          3           2
 I isoleucine          0.0          0           0
 K lysine              4.3          4           1
 L leucine             5.4          5           1
 M methionine          3.2          3           1
 N asparagine          0.0          0           0
 P proline             8.6          8           3
 Q glutamine           2.2          2           1
 R arginine            8.6          8           1
 S serine             14.0         13           3
 T threonine           8.6          8           1
 V valine              2.2          2           1
 W tryptophan          4.3          4           1
 Y tyrosine            1.1          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100127891          0.027   PREDICTED: hypothetical protein 
LOC100127891          0.027   PREDICTED: similar to hCG2042508 
LOC100127891          0.027   PREDICTED: similar to hCG2042508 
LOC100127891          0.027   PREDICTED: similar to hCG2042508 
SOX7                  0.027   SRY-box 7 
SETDB2                0.022   SET domain, bifurcated 2 isoform b 
SETDB2                0.022   SET domain, bifurcated 2 isoform a 
HTRA2                 0.022   HtrA serine peptidase 2 isoform 1 preproprotein [Homo...
HTRA2                 0.022   HtrA serine peptidase 2 isoform 2 
LOC100291634          0.022   PREDICTED: hypothetical protein XP_002346062 
LOC100287232          0.022   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.022   PREDICTED: hypothetical protein 
LOC100292541          0.016   PREDICTED: hypothetical protein 
GATAD1                0.016   GATA zinc finger domain containing 1 
GBX1                  0.016   gastrulation brain homeo box 1 
DLX2                  0.016   distal-less homeobox 2 
PKD1                  0.016   polycystin 1 isoform 2 precursor 
PKD1                  0.016   polycystin 1 isoform 1 precursor 
LOC100293044          0.016   PREDICTED: hypothetical protein 
LOC100294424          0.016   PREDICTED: hypothetical protein 
C4orf8                0.016   hypothetical protein LOC8603 
CSPG5                 0.011   chondroitin sulfate proteoglycan 5 (neuroglycan C) ...
KRTAP6-3              0.011   keratin associated protein 6-3 
RLTPR                 0.011   RGD motif, leucine rich repeats, tropomodulin domain...
FLJ37078              0.011   hypothetical protein LOC222183 
DUSP8                 0.011   dual specificity phosphatase 8 
LOC100292758          0.011   PREDICTED: hypothetical protein 
NKX3-2                0.011   NK3 homeobox 2 
STAB2                 0.005   stabilin 2 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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