Guide to the Human Genome
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Name: LOC100291766 Sequence: fasta or formatted (121aa) NCBI GI: 239753615
Description:

PREDICTED: hypothetical protein XP_002345718

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.5         20           3
 C cysteine            3.3          4           1
 D aspartate           2.5          3           1
 E glutamate           4.1          5           2
 F phenylalanine       1.7          2           1
 G glycine            12.4         15           2
 H histidine           0.8          1           1
 I isoleucine          2.5          3           1
 K lysine              0.8          1           1
 L leucine            10.7         13           2
 M methionine          4.1          5           1
 N asparagine          1.7          2           1
 P proline             9.9         12           2
 Q glutamine           2.5          3           1
 R arginine            9.9         12           1
 S serine              5.8          7           2
 T threonine           3.3          4           1
 V valine              3.3          4           1
 W tryptophan          4.1          5           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002345718 
LOC100290642          1.000   PREDICTED: hypothetical protein XP_002346613 
LOC100288489          1.000   PREDICTED: hypothetical protein XP_002342406 
MAP6                  0.043   microtubule-associated protein 6 isoform 2 
MAP6                  0.043   microtubule-associated protein 6 isoform 1 
LOC100291627          0.030   PREDICTED: hypothetical protein XP_002345251 
LOC100289867          0.030   PREDICTED: hypothetical protein XP_002348034 
LOC100288231          0.030   PREDICTED: hypothetical protein XP_002343737 
ANKRD18A              0.030   PREDICTED: ankyrin repeat domain 18A 
ANKRD18A              0.030   PREDICTED: ankyrin repeat domain 18A 
LOC649201             0.022   PREDICTED: similar to paraneoplastic antigen MA1 [H...
LOC649201             0.022   PREDICTED: similar to paraneoplastic antigen MA1 [H...
LOC649201             0.022   PREDICTED: similar to paraneoplastic antigen MA1 [H...
LOC390937             0.022   PREDICTED: similar to hCG2040171 
LOC390937             0.022   PREDICTED: similar to hCG2040171 
LOC390937             0.022   PREDICTED: similar to hCG2040171 
ITGA7                 0.022   integrin alpha 7 isoform 1 precursor 
ITGA7                 0.022   integrin alpha 7 isoform 2 precursor 
LOC100287812          0.022   PREDICTED: hypothetical protein XP_002343253 
TRNP1                 0.022   TMF regulated nuclear protein 
MST150                0.022   putative small membrane protein NID67 
PCDH8                 0.017   protocadherin 8 isoform 1 precursor 
GDF7                  0.017   growth differentiation factor 7 preproprotein 
PRR12                 0.017   proline rich 12 
LOC339192             0.017   PREDICTED: hypothetical protein 
LOC339192             0.017   PREDICTED: hypothetical protein 
LOC339192             0.017   PREDICTED: hypothetical protein 
SNRPD3                0.017   small nuclear ribonucleoprotein polypeptide D3 
LOC100292233          0.013   PREDICTED: hypothetical protein 
LOC284988             0.013   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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