Guide to the Human Genome
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Name: ITGA7 Sequence: fasta or formatted (1137aa) NCBI GI: 222418611
Description:

integrin alpha 7 isoform 2 precursor

Referenced in:

Integrins

Other entries for this name:
alt prot [1141aa] integrin alpha 7 isoform 1 precursor
alt prot [1044aa] integrin alpha 7 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         93           3
 C cysteine            1.8         21           1
 D aspartate           5.6         64           2
 E glutamate           5.8         66           2
 F phenylalanine       3.7         42           2
 G glycine             9.0        102           2
 H histidine           2.4         27           1
 I isoleucine          3.8         43           1
 K lysine              3.3         37           3
 L leucine            11.6        132           3
 M methionine          1.8         21           1
 N asparagine          2.7         31           2
 P proline             6.6         75           2
 Q glutamine           5.1         58           2
 R arginine            6.0         68           4
 S serine              7.6         86           2
 T threonine           3.3         38           2
 V valine              7.8         89           2
 W tryptophan          1.6         18           2
 Y tyrosine            2.3         26           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   integrin alpha 7 isoform 2 precursor 
ITGA7                 0.965   integrin alpha 7 isoform 1 precursor 
ITGA7                 0.843   integrin alpha 7 isoform 3 
ITGA6                 0.432   integrin alpha chain, alpha 6 isoform a precursor [...
ITGA6                 0.425   integrin alpha chain, alpha 6 isoform b precursor [...
ITGA3                 0.269   integrin alpha 3 isoform b precursor 
ITGA3                 0.265   integrin alpha 3 isoform a precursor 
ITGA8                 0.140   integrin, alpha 8 
ITGA9                 0.130   integrin, alpha 9 precursor 
ITGAV                 0.129   integrin alpha-V isoform 1 precursor 
ITGA5                 0.123   integrin alpha 5 precursor 
ITGAV                 0.122   integrin alpha-V isoform 2 
ITGAV                 0.116   integrin alpha-V isoform 3 precursor 
ITGA2B                0.115   integrin alpha 2b preproprotein 
ITGA4                 0.102   integrin alpha 4 precursor 
ITGA1                 0.088   integrin, alpha 1 precursor 
ITGA10                0.070   integrin, alpha 10 precursor 
ITGAL                 0.060   integrin alpha L isoform a precursor 
ITGAL                 0.059   integrin alpha L isoform b precursor 
ITGA11                0.058   integrin, alpha 11 precursor 
ITGAX                 0.055   integrin alpha X precursor 
ITGAE                 0.055   integrin, alpha E precursor 
ITGA2                 0.055   integrin alpha 2 precursor 
ITGAM                 0.050   integrin alpha M isoform 1 precursor 
ITGAM                 0.049   integrin alpha M isoform 2 precursor 
ITGAD                 0.046   integrin, alpha D precursor 
GPLD1                 0.020   glycosylphosphatidylinositol specific phospholipase ...
LOC100289853          0.010   PREDICTED: hypothetical protein XP_002347690 
PKLR                  0.003   pyruvate kinase, liver and RBC isoform 2 
PKLR                  0.003   pyruvate kinase, liver and RBC isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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