Guide to the Human Genome
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Name: ITGA7 Sequence: fasta or formatted (1141aa) NCBI GI: 222418613
Description:

integrin alpha 7 isoform 1 precursor

Referenced in:

Integrins

Other entries for this name:
alt prot [1137aa] integrin alpha 7 isoform 2 precursor
alt prot [1044aa] integrin alpha 7 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.4         96           3
 C cysteine            1.9         22           1
 D aspartate           5.4         62           2
 E glutamate           6.1         70           2
 F phenylalanine       3.7         42           2
 G glycine             9.1        104           2
 H histidine           2.5         28           1
 I isoleucine          3.8         43           1
 K lysine              3.2         37           3
 L leucine            11.2        128           3
 M methionine          1.8         21           1
 N asparagine          2.6         30           2
 P proline             6.6         75           2
 Q glutamine           5.2         59           2
 R arginine            6.0         69           4
 S serine              7.4         85           2
 T threonine           3.2         37           2
 V valine              7.8         89           2
 W tryptophan          1.6         18           2
 Y tyrosine            2.3         26           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   integrin alpha 7 isoform 1 precursor 
ITGA7                 0.960   integrin alpha 7 isoform 2 precursor 
ITGA7                 0.878   integrin alpha 7 isoform 3 
ITGA6                 0.447   integrin alpha chain, alpha 6 isoform a precursor [...
ITGA6                 0.439   integrin alpha chain, alpha 6 isoform b precursor [...
ITGA3                 0.264   integrin alpha 3 isoform b precursor 
ITGA3                 0.260   integrin alpha 3 isoform a precursor 
ITGA8                 0.140   integrin, alpha 8 
ITGA9                 0.129   integrin, alpha 9 precursor 
ITGAV                 0.127   integrin alpha-V isoform 1 precursor 
ITGA5                 0.120   integrin alpha 5 precursor 
ITGAV                 0.119   integrin alpha-V isoform 2 
ITGAV                 0.114   integrin alpha-V isoform 3 precursor 
ITGA2B                0.113   integrin alpha 2b preproprotein 
ITGA4                 0.098   integrin alpha 4 precursor 
ITGA1                 0.088   integrin, alpha 1 precursor 
ITGA10                0.070   integrin, alpha 10 precursor 
ITGAL                 0.059   integrin alpha L isoform a precursor 
ITGA11                0.058   integrin, alpha 11 precursor 
ITGAL                 0.058   integrin alpha L isoform b precursor 
ITGAX                 0.053   integrin alpha X precursor 
ITGA2                 0.053   integrin alpha 2 precursor 
ITGAE                 0.053   integrin, alpha E precursor 
ITGAM                 0.047   integrin alpha M isoform 1 precursor 
ITGAM                 0.046   integrin alpha M isoform 2 precursor 
ITGAD                 0.043   integrin, alpha D precursor 
GPLD1                 0.020   glycosylphosphatidylinositol specific phospholipase ...
LOC100289853          0.010   PREDICTED: hypothetical protein XP_002347690 
LOC100128598          0.004   PREDICTED: hypothetical protein 
LOC100128598          0.004   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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