Guide to the Human Genome
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Name: LOC643376 Sequence: fasta or formatted (712aa) NCBI GI: 223029436
Description:

hypothetical protein LOC643376

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         36           3
 C cysteine            2.5         18           2
 D aspartate           4.4         31           1
 E glutamate          10.5         75           4
 F phenylalanine       1.5         11           2
 G glycine             6.0         43           2
 H histidine           1.8         13           2
 I isoleucine          2.8         20           1
 K lysine              4.5         32           1
 L leucine            11.0         78           3
 M methionine          1.1          8           1
 N asparagine          2.7         19           2
 P proline            10.4         74           2
 Q glutamine           4.5         32           3
 R arginine            5.6         40           2
 S serine             11.4         81           3
 T threonine           6.2         44           2
 V valine              5.6         40           2
 W tryptophan          1.3          9           1
 Y tyrosine            1.1          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC643376 
KLHL3                 0.031   kelch-like 3 
KLHL2                 0.028   kelch-like 2, Mayven isoform 2 
KLHL2                 0.028   kelch-like 2, Mayven isoform 1 
KLHL12                0.027   kelch-like 12 
ZBTB45                0.026   zinc finger and BTB domain containing 45 
ZBTB11                0.026   zinc finger protein ZNF-U69274 
GAN                   0.026   gigaxonin 
ZBTB20                0.025   zinc finger and BTB domain containing 20 
ZNF509                0.025   zinc finger protein 509 
ZBTB7A                0.024   zinc finger and BTB domain containing 7A 
IVNS1ABP              0.024   influenza virus NS1A binding protein 
ZBTB48                0.022   zinc finger and BTB domain containing 48 
LOC729249             0.022   PREDICTED: similar to kelch-like 2, Mayven (Drosoph...
IPP                   0.021   intracisternal A particle-promoted polypeptide isofor...
IPP                   0.021   intracisternal A particle-promoted polypeptide isof...
BACH2                 0.021   BTB and CNC homology 1, basic leucine zipper transcr...
ZNF131                0.021   zinc finger protein 131 
KLHL17                0.021   kelch-like 17 
KLHL34                0.020   kelch-like 34 
BACH1                 0.020   BTB and CNC homology 1 transcription factor isoform ...
BACH1                 0.020   BTB and CNC homology 1 transcription factor isoform a...
KLHL29                0.020   PREDICTED: kelch-like 29 (Drosophila) 
KLHL29                0.020   PREDICTED: kelch-like 29 (Drosophila) 
KLHL29                0.020   PREDICTED: kelch repeat and BTB (POZ) domain contai...
ZFP161                0.019   zinc finger protein 161 homolog 
ZFP161                0.019   zinc finger protein 161 homolog 
KLHL20                0.019   kelch-like 20 
KLHL26                0.019   kelch-like 26 
ZBTB8A                0.019   zinc finger and BTB domain containing 8A 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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