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Search of human proteins with 239753387
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753387 PREDICTED: hypothetical protein [Homo sapiens]
(131 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753387 PREDICTED: hypothetical protein [Homo sapiens] 268 7e-73
gi|239747956 PREDICTED: hypothetical protein [Homo sapiens] 268 7e-73
gi|239741851 PREDICTED: hypothetical protein XP_002342325 [Homo ... 263 2e-71
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 37 0.006
gi|239746609 PREDICTED: hypothetical protein XP_002343799 [Homo ... 34 0.037
gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens] 33 0.083
gi|65301122 MARVEL domain containing 3 isoform 1 [Homo sapiens] 32 0.11
gi|65293358 MARVEL domain containing 3 isoform 2 [Homo sapiens] 32 0.11
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 32 0.11
gi|203098098 shroom family member 3 protein [Homo sapiens] 32 0.14
gi|169167103 PREDICTED: hypothetical protein [Homo sapiens] 32 0.19
gi|169166257 PREDICTED: hypothetical protein [Homo sapiens] 32 0.19
gi|239741937 PREDICTED: hypothetical protein [Homo sapiens] 32 0.19
gi|239753506 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|239748159 PREDICTED: hypothetical protein XP_002346542 [Homo ... 31 0.24
gi|239742057 PREDICTED: hypothetical protein XP_002342381 [Homo ... 31 0.24
gi|25952087 potassium voltage-gated channel, shaker-related subf... 31 0.32
gi|224548936 hypothetical protein LOC100170229 [Homo sapiens] 30 0.54
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 30 0.54
gi|56676330 HP1-BP74 [Homo sapiens] 30 0.54
gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens] 30 0.54
gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens] 30 0.54
gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo ... 30 0.70
gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo ... 30 0.70
gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo ... 30 0.70
gi|239756083 PREDICTED: hypothetical protein [Homo sapiens] 29 0.92
gi|239750612 PREDICTED: hypothetical protein [Homo sapiens] 29 0.92
gi|239744919 PREDICTED: hypothetical protein XP_002343307 [Homo ... 29 0.92
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 29 0.92
gi|195972905 zinc finger protein 385A isoform b [Homo sapiens] 29 0.92
>gi|239753387 PREDICTED: hypothetical protein [Homo sapiens]
Length = 131
Score = 268 bits (686), Expect = 7e-73
Identities = 131/131 (100%), Positives = 131/131 (100%)
Query: 1 MWTHPQALTVRRRQRAKLSSVSGNALGSSSVNPCWEQRLRKAESADRARDKAAFHSPHLP 60
MWTHPQALTVRRRQRAKLSSVSGNALGSSSVNPCWEQRLRKAESADRARDKAAFHSPHLP
Sbjct: 1 MWTHPQALTVRRRQRAKLSSVSGNALGSSSVNPCWEQRLRKAESADRARDKAAFHSPHLP 60
Query: 61 GRRHAHGLRGLRASGRERVPGRKPAPGLSVGAQITTNPAPRRRPPSSKEVRGDLGVGRIP 120
GRRHAHGLRGLRASGRERVPGRKPAPGLSVGAQITTNPAPRRRPPSSKEVRGDLGVGRIP
Sbjct: 61 GRRHAHGLRGLRASGRERVPGRKPAPGLSVGAQITTNPAPRRRPPSSKEVRGDLGVGRIP 120
Query: 121 AEKRNKQDSNS 131
AEKRNKQDSNS
Sbjct: 121 AEKRNKQDSNS 131
>gi|239747956 PREDICTED: hypothetical protein [Homo sapiens]
Length = 131
Score = 268 bits (686), Expect = 7e-73
Identities = 131/131 (100%), Positives = 131/131 (100%)
Query: 1 MWTHPQALTVRRRQRAKLSSVSGNALGSSSVNPCWEQRLRKAESADRARDKAAFHSPHLP 60
MWTHPQALTVRRRQRAKLSSVSGNALGSSSVNPCWEQRLRKAESADRARDKAAFHSPHLP
Sbjct: 1 MWTHPQALTVRRRQRAKLSSVSGNALGSSSVNPCWEQRLRKAESADRARDKAAFHSPHLP 60
Query: 61 GRRHAHGLRGLRASGRERVPGRKPAPGLSVGAQITTNPAPRRRPPSSKEVRGDLGVGRIP 120
GRRHAHGLRGLRASGRERVPGRKPAPGLSVGAQITTNPAPRRRPPSSKEVRGDLGVGRIP
Sbjct: 61 GRRHAHGLRGLRASGRERVPGRKPAPGLSVGAQITTNPAPRRRPPSSKEVRGDLGVGRIP 120
Query: 121 AEKRNKQDSNS 131
AEKRNKQDSNS
Sbjct: 121 AEKRNKQDSNS 131
>gi|239741851 PREDICTED: hypothetical protein XP_002342325 [Homo
sapiens]
Length = 133
Score = 263 bits (673), Expect = 2e-71
Identities = 131/133 (98%), Positives = 131/133 (98%), Gaps = 2/133 (1%)
Query: 1 MWTHPQALTVRRRQRAKLSSVSGNALGSSSVNPCWEQRLRKAESADRARDKAAFHSP--H 58
MWTHPQALTVRRRQRAKLSSVSGNALGSSSVNPCWEQRLRKAESADRARDKAAFHSP H
Sbjct: 1 MWTHPQALTVRRRQRAKLSSVSGNALGSSSVNPCWEQRLRKAESADRARDKAAFHSPSPH 60
Query: 59 LPGRRHAHGLRGLRASGRERVPGRKPAPGLSVGAQITTNPAPRRRPPSSKEVRGDLGVGR 118
LPGRRHAHGLRGLRASGRERVPGRKPAPGLSVGAQITTNPAPRRRPPSSKEVRGDLGVGR
Sbjct: 61 LPGRRHAHGLRGLRASGRERVPGRKPAPGLSVGAQITTNPAPRRRPPSSKEVRGDLGVGR 120
Query: 119 IPAEKRNKQDSNS 131
IPAEKRNKQDSNS
Sbjct: 121 IPAEKRNKQDSNS 133
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 36.6 bits (83), Expect = 0.006
Identities = 35/143 (24%), Positives = 59/143 (41%), Gaps = 21/143 (14%)
Query: 5 PQALTVRRRQRAKLSSVSGNALGSSSVNPCWEQRLRKAESADRARDKAAFHSPHLPGRRH 64
P+ +R++R+ SS S ++ SSS + + S+ + ++ S P +
Sbjct: 2596 PEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPG 2655
Query: 65 AHGLRGLRASGRERVPG-------RKPAPGLSVGAQITTNPAPRRRP---PSSKEV---- 110
L AS ++ PG RKP L ++ +P RRRP PS ++
Sbjct: 2656 PQALPK-PASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPVERRRPSPQPSPRDQQSSS 2714
Query: 111 ------RGDLGVGRIPAEKRNKQ 127
RG G R P+ KR ++
Sbjct: 2715 SERGSRRGQRGDSRSPSHKRRRE 2737
Score = 29.3 bits (64), Expect = 0.92
Identities = 27/98 (27%), Positives = 36/98 (36%), Gaps = 15/98 (15%)
Query: 9 TVRRRQRAKLSSVSGNALGSSSVNPCWEQRLRKAESADRARDKAAFHSPHLPGRRHAHGL 68
T RRR R+ GSS QR R R R + + P R+ +
Sbjct: 1784 TTRRRDRS----------GSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRT 1833
Query: 69 RGLRASGRERVPGRKPAPGLSVGAQITTNPAPRRRPPS 106
R GR R P P ++ T+PAP +R S
Sbjct: 1834 SSRRRRGRSRTP-----PTSRKRSRSRTSPAPWKRSRS 1866
Score = 28.1 bits (61), Expect = 2.1
Identities = 32/136 (23%), Positives = 49/136 (36%), Gaps = 19/136 (13%)
Query: 3 THPQALTVRRRQRAKLSSVSGNALG-------SSSVNPCWEQRLRKAESADRARDKAAFH 55
+H ++ R R R++ + G + S S P +R R A R R ++
Sbjct: 562 SHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPT-RRRSRSRTPARRGRSRS--- 617
Query: 56 SPHLPGRRHAHGLRGLRASGRERVPGRKPAPGLSVGAQITTNPAPRRRPPSSKEVRGDLG 115
P RR + +R R R P R+ G + PA R R S R
Sbjct: 618 --RTPARRRSRTRSPVRRRSRSRSPARRS------GRSRSRTPARRGRSRSRTPARRGRS 669
Query: 116 VGRIPAEKRNKQDSNS 131
R PA + + S +
Sbjct: 670 RSRTPARRSGRSRSRT 685
>gi|239746609 PREDICTED: hypothetical protein XP_002343799 [Homo
sapiens]
Length = 245
Score = 33.9 bits (76), Expect = 0.037
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 12/83 (14%)
Query: 41 KAESADRARDKAAFHSPHLPGRRHAHGLRGLRASGRERVPGRKPAPGLSVGAQITTNPAP 100
+ E R R HS R+A G + LR + R R GR+ P PAP
Sbjct: 64 REEDGGRERRGGLSHSKDCNAARNARG-KHLRRTRRRRTLGRRCRP-----------PAP 111
Query: 101 RRRPPSSKEVRGDLGVGRIPAEK 123
R RP +++ D RIPA +
Sbjct: 112 RPRPRPRRKLALDQAATRIPAAR 134
>gi|89363017 alpha 2 type V collagen preproprotein [Homo sapiens]
Length = 1499
Score = 32.7 bits (73), Expect = 0.083
Identities = 31/94 (32%), Positives = 37/94 (39%), Gaps = 21/94 (22%)
Query: 56 SPHLPGRRHAHGLRGLRAS----GRERVPGRKPAPGLSVGAQITTNP------------- 98
S LPG + A G RG S G + PGR PGL +T NP
Sbjct: 532 SDGLPGPKGAQGERGPVGSSGPKGSQGDPGRPGEPGLPGARGLTGNPGVQGPEGKLGPLG 591
Query: 99 AP----RRRPPSSKEVRGDLGVGRIPAEKRNKQD 128
AP R PP S +RG G +P K + D
Sbjct: 592 APGEDGRPGPPGSIGIRGQPGSMGLPGPKGSSGD 625
>gi|65301122 MARVEL domain containing 3 isoform 1 [Homo sapiens]
Length = 410
Score = 32.3 bits (72), Expect = 0.11
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 67 GLRGLRASGRERVPGRKPAPGLSVGAQITTNPAPRRRPPSSKEVRGDLGVGRIPAEKRNK 126
G R RA RER PGR+P P Q T+ PR RP + R G R ++ +
Sbjct: 6 GAREPRARPRERDPGRRPHPD-----QGRTHDRPRDRPGDPRRKRSSDGNRRRDGDRDPE 60
Query: 127 QD 128
+D
Sbjct: 61 RD 62
>gi|65293358 MARVEL domain containing 3 isoform 2 [Homo sapiens]
Length = 401
Score = 32.3 bits (72), Expect = 0.11
Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 67 GLRGLRASGRERVPGRKPAPGLSVGAQITTNPAPRRRPPSSKEVRGDLGVGRIPAEKRNK 126
G R RA RER PGR+P P Q T+ PR RP + R G R ++ +
Sbjct: 6 GAREPRARPRERDPGRRPHPD-----QGRTHDRPRDRPGDPRRKRSSDGNRRRDGDRDPE 60
Query: 127 QD 128
+D
Sbjct: 61 RD 62
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 32.3 bits (72), Expect = 0.11
Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 5/99 (5%)
Query: 12 RRQRAKLSSVSGNALGSSSVNPCWEQRLRKAESADRARDKAAFHSPHLPGRRHAH-GLRG 70
RRQ + SS SG++ S P ++ E R R + + P +R RG
Sbjct: 486 RRQNQQSSSDSGSSSSSEDERPK-RSHVKNGEVGRRRRHSPSRSASPSPRKRQKETSPRG 544
Query: 71 LRASGRERVPGRK---PAPGLSVGAQITTNPAPRRRPPS 106
R P R+ P+P + T P PRRR PS
Sbjct: 545 RRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRRRTPS 583
Score = 30.4 bits (67), Expect = 0.41
Identities = 24/90 (26%), Positives = 38/90 (42%), Gaps = 14/90 (15%)
Query: 41 KAESADRARDKAAFHSPHLPGRRHAHGLRGLRASGRERVPGRKPAPGLSVGAQITTNPAP 100
++ S R+R ++ S P RRH R+ R P R+P+P + T P
Sbjct: 279 RSRSKSRSRTRSRSPSHTRPRRRH-------RSRSRSYSPRRRPSPRRRPSPRRRT--PP 329
Query: 101 RRRPPSSKEVRGDLGVGRIPAEKRNKQDSN 130
RR PP + R R P +R + ++
Sbjct: 330 RRMPPPPRHRR-----SRSPVRRRRRSSAS 354
Score = 27.3 bits (59), Expect = 3.5
Identities = 29/102 (28%), Positives = 39/102 (38%), Gaps = 19/102 (18%)
Query: 14 QRAKLSSVSGNALG-------SSSVNPCWEQRLRKAESADRARDKAAFHSPHLPGRRHAH 66
+R K S V +G S S +P R R+ E++ R R + SP P R
Sbjct: 505 ERPKRSHVKNGEVGRRRRHSPSRSASP--SPRKRQKETSPRGRRR---RSPSPPPTRRRR 559
Query: 67 GLRGLRASGRERVPGRKPAPGLSVGAQITTNPAPRRRPPSSK 108
R R P P + T +P PRRR PS +
Sbjct: 560 SPSPAPPPRRRRTPTPPPR-------RRTPSPPPRRRSPSPR 594
Score = 26.6 bits (57), Expect = 6.0
Identities = 28/104 (26%), Positives = 38/104 (36%), Gaps = 4/104 (3%)
Query: 5 PQALTVRRRQRAKLSSVSGNALGSSSVNPCWEQRLRKAESADRARDKAAFHSPHLPGRRH 64
P RRR R++ S S S P +R R + + SP RR
Sbjct: 293 PSHTRPRRRHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRS-RSPVRRRRRS 351
Query: 65 AHGLRGLRASG---RERVPGRKPAPGLSVGAQITTNPAPRRRPP 105
+ L G +S R R P +KP S + T +P PP
Sbjct: 352 SASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPP 395
>gi|203098098 shroom family member 3 protein [Homo sapiens]
Length = 1996
Score = 32.0 bits (71), Expect = 0.14
Identities = 23/91 (25%), Positives = 36/91 (39%), Gaps = 7/91 (7%)
Query: 26 LGSSSVNPCWEQRLRKAESADRARDKAAFHSPHLPGRRHAHGLRGLRASGRERVPGRKPA 85
LG+ + W R A R+ + +A SPH P RH+ + E R
Sbjct: 948 LGAPVASRSWRPRPSSAHVGLRSPEASASASPHTPRERHS-------VTPAEGDLARPVP 1000
Query: 86 PGLSVGAQITTNPAPRRRPPSSKEVRGDLGV 116
P GA+ P ++R S E ++G+
Sbjct: 1001 PAARRGARRRLTPEQKKRSYSEPEKMNEVGI 1031
>gi|169167103 PREDICTED: hypothetical protein [Homo sapiens]
Length = 185
Score = 31.6 bits (70), Expect = 0.19
Identities = 32/102 (31%), Positives = 41/102 (40%), Gaps = 6/102 (5%)
Query: 5 PQALTVRRRQRAKLSSVSGNA--LGSSSVNPCWEQRLRKAESADRA----RDKAAFHSPH 58
P L R L VS GSSS +P +A S R+ KA S
Sbjct: 46 PYGLKDTRSLHVLLGDVSATFGHTGSSSDSPLSLPMSPEAASGCRSPRALEMKAGPCSTQ 105
Query: 59 LPGRRHAHGLRGLRASGRERVPGRKPAPGLSVGAQITTNPAP 100
GR+ AHG L+ + R G P PG ++ A + NP P
Sbjct: 106 EGGRQWAHGSVPLQTTARLAALGIFPCPGETLSASLHCNPIP 147
>gi|169166257 PREDICTED: hypothetical protein [Homo sapiens]
Length = 185
Score = 31.6 bits (70), Expect = 0.19
Identities = 32/102 (31%), Positives = 41/102 (40%), Gaps = 6/102 (5%)
Query: 5 PQALTVRRRQRAKLSSVSGNA--LGSSSVNPCWEQRLRKAESADRA----RDKAAFHSPH 58
P L R L VS GSSS +P +A S R+ KA S
Sbjct: 46 PYGLKDTRSLHVLLGDVSATFGHTGSSSDSPLSLPMSPEAASGCRSPRALEMKAGPCSTQ 105
Query: 59 LPGRRHAHGLRGLRASGRERVPGRKPAPGLSVGAQITTNPAP 100
GR+ AHG L+ + R G P PG ++ A + NP P
Sbjct: 106 EGGRQWAHGSVPLQTTARLAALGIFPCPGETLSASLHCNPIP 147
>gi|239741937 PREDICTED: hypothetical protein [Homo sapiens]
Length = 167
Score = 31.6 bits (70), Expect = 0.19
Identities = 24/69 (34%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 50 DKAAFHSPHLPGRRHAHGLRGLRASGRERVPGRKPAPGLSVGAQITTNP-APRRRPPSSK 108
++ A H LPG+RH G RG A+ + R P P P PR+RP
Sbjct: 69 ERQAPHGVALPGQRHLGGPRGGAAASAGQGANR-PTPRTRGSRSTPQQPRGPRQRPTGQH 127
Query: 109 EVR-GDLGV 116
R GDLG+
Sbjct: 128 RRRDGDLGL 136
>gi|239753506 PREDICTED: hypothetical protein [Homo sapiens]
Length = 196
Score = 31.2 bits (69), Expect = 0.24
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 27 GSSSVNPCWEQRLRKAESADRARDKAAFHSPHLPGRRHAHGLRGLR-ASGRERVPGRKP 84
G S C R E+ R + +P L GRR AHG LR A R GR+P
Sbjct: 73 GPGSAGRCGPSEARHREARVPRRQEVGPRTPRLLGRRSAHGPPPLRVAPARVASQGRQP 131
>gi|239748159 PREDICTED: hypothetical protein XP_002346542 [Homo
sapiens]
Length = 246
Score = 31.2 bits (69), Expect = 0.24
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 27 GSSSVNPCWEQRLRKAESADRARDKAAFHSPHLPGRRHAHGLRGLR-ASGRERVPGRKP 84
G S C R E+ R + +P L GRR AHG LR A R GR+P
Sbjct: 123 GPGSAGRCGPSEARHREARVPRRQEVGPRTPRLLGRRSAHGPPPLRVAPARVASQGRQP 181
>gi|239742057 PREDICTED: hypothetical protein XP_002342381 [Homo
sapiens]
Length = 196
Score = 31.2 bits (69), Expect = 0.24
Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 27 GSSSVNPCWEQRLRKAESADRARDKAAFHSPHLPGRRHAHGLRGLR-ASGRERVPGRKP 84
G S C R E+ R + +P L GRR AHG LR A R GR+P
Sbjct: 73 GPGSAGRCGPSEARHREARVPRRQEVGPRTPRLLGRRSAHGPPPLRVAPARVASQGRQP 131
>gi|25952087 potassium voltage-gated channel, shaker-related
subfamily, member 5 [Homo sapiens]
Length = 613
Score = 30.8 bits (68), Expect = 0.32
Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 80 PGRKPAPGLSVGAQITTNPAPRRRPPSSKEVRGDLGVGRI 119
PG +P P L P PRR PP +E GD G+G +
Sbjct: 73 PGVRPLPPLPEEL-----PRPRRPPPEDEEEEGDPGLGTV 107
>gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]
Length = 715
Score = 30.0 bits (66), Expect = 0.54
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 11 RRRQRAKLSSVSGNALGSSSVNPCWEQRLRKAESADRARDKAAFHSPHLPGRRHAHGLRG 70
+ RQR + S + S S +P E+ R++ S + RD+ + SP R R
Sbjct: 529 KERQRRQSRSPNKERDRSQSRSPSEEREHRQSRSPSKERDRRRWRSPSKERER-----RQ 583
Query: 71 LRASGRERVPGRKPAPGLSVG 91
R+S ER R +P G
Sbjct: 584 SRSSSEERDHSRSRSPNKQSG 604
Score = 26.6 bits (57), Expect = 6.0
Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 5/121 (4%)
Query: 11 RRRQRAKLSSVSGNALGSSSVNPCWEQRLRKAESADRARDKAAFHSPHLPGRRHAHGLRG 70
+ RQ + S S S +P E++ R++ S ++ RD++ SP R H R
Sbjct: 505 KERQCRQSRSSSKERDHRRSRSPSKERQRRQSRSPNKERDRSQSRSPS-EEREH----RQ 559
Query: 71 LRASGRERVPGRKPAPGLSVGAQITTNPAPRRRPPSSKEVRGDLGVGRIPAEKRNKQDSN 130
R+ +ER R +P + + + + R S+ G R A + K S
Sbjct: 560 SRSPSKERDRRRWRSPSKERERRQSRSSSEERDHSRSRSPNKQSGYSRPRASSKEKAHSR 619
Query: 131 S 131
S
Sbjct: 620 S 620
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 30.0 bits (66), Expect = 0.54
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 60 PGRRHAHGLRG------LRASGRERVPGRKPAPGLSVGAQITTNPAPRRRP--PSSKEVR 111
PG R GLRG L +PG+ A G+ P P+ P P + ++
Sbjct: 146 PGIRGDQGLRGPPGPPGLPGPSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLK 205
Query: 112 GDLGVGR 118
GD GVG+
Sbjct: 206 GDNGVGQ 212
>gi|56676330 HP1-BP74 [Homo sapiens]
Length = 553
Score = 30.0 bits (66), Expect = 0.54
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 70 GLRASGRERVPGRKPAPGLSVGAQITTNPAPRRRPPSSK 108
G AS ++R G KPAP +S + P P++ PP +K
Sbjct: 467 GKAASVKQR--GSKPAPKVSAAQRGKARPLPKKAPPKAK 503
>gi|32895368 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 30.0 bits (66), Expect = 0.54
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 59 LPGRRHAHGLRGLRASGRERVPGRKPAPGLSVGAQITTNPAPRRRP----PSSKEVRGDL 114
+PG + G+ G+ G++ +PG+ PG + P P P P +GD
Sbjct: 303 VPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQGLPGLPGPPGLPGIGKPGFPGPKGDR 362
Query: 115 GVGRIP 120
G+G +P
Sbjct: 363 GMGGVP 368
>gi|17738302 alpha 1 type VIII collagen precursor [Homo sapiens]
Length = 744
Score = 30.0 bits (66), Expect = 0.54
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 4/66 (6%)
Query: 59 LPGRRHAHGLRGLRASGRERVPGRKPAPGLSVGAQITTNPAPRRRP----PSSKEVRGDL 114
+PG + G+ G+ G++ +PG+ PG + P P P P +GD
Sbjct: 303 VPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQGLPGLPGPPGLPGIGKPGFPGPKGDR 362
Query: 115 GVGRIP 120
G+G +P
Sbjct: 363 GMGGVP 368
>gi|239754081 PREDICTED: hypothetical protein XP_002345876 [Homo
sapiens]
Length = 355
Score = 29.6 bits (65), Expect = 0.70
Identities = 27/82 (32%), Positives = 33/82 (40%), Gaps = 11/82 (13%)
Query: 25 ALGSSSVNPC---WEQRLRKAE-SADRARDKAAFHSPHLPGRRHAHGLRGLRASGRERVP 80
AL S+ C W Q R A +A RA + H+P R A GLR A P
Sbjct: 279 ALSPSARRRCRVNWNQSSRPASHNAQRA-------ARHIPSRPRASGLRARAARRPGLDP 331
Query: 81 GRKPAPGLSVGAQITTNPAPRR 102
G P P + T+P P R
Sbjct: 332 GPAPYPLTPAALRPGTSPHPGR 353
>gi|239748667 PREDICTED: hypothetical protein XP_002346761 [Homo
sapiens]
Length = 355
Score = 29.6 bits (65), Expect = 0.70
Identities = 27/82 (32%), Positives = 33/82 (40%), Gaps = 11/82 (13%)
Query: 25 ALGSSSVNPC---WEQRLRKAE-SADRARDKAAFHSPHLPGRRHAHGLRGLRASGRERVP 80
AL S+ C W Q R A +A RA + H+P R A GLR A P
Sbjct: 279 ALSPSARRRCRVNWNQSSRPASHNAQRA-------ARHIPSRPRASGLRARAARRPGLDP 331
Query: 81 GRKPAPGLSVGAQITTNPAPRR 102
G P P + T+P P R
Sbjct: 332 GPAPYPLTPAALRPGTSPHPGR 353
>gi|239742692 PREDICTED: hypothetical protein XP_002342583 [Homo
sapiens]
Length = 355
Score = 29.6 bits (65), Expect = 0.70
Identities = 27/82 (32%), Positives = 33/82 (40%), Gaps = 11/82 (13%)
Query: 25 ALGSSSVNPC---WEQRLRKAE-SADRARDKAAFHSPHLPGRRHAHGLRGLRASGRERVP 80
AL S+ C W Q R A +A RA + H+P R A GLR A P
Sbjct: 279 ALSPSARRRCRVNWNQSSRPASHNAQRA-------ARHIPSRPRASGLRARAARRPGLDP 331
Query: 81 GRKPAPGLSVGAQITTNPAPRR 102
G P P + T+P P R
Sbjct: 332 GPAPYPLTPAALRPGTSPHPGR 353
>gi|239756083 PREDICTED: hypothetical protein [Homo sapiens]
Length = 174
Score = 29.3 bits (64), Expect = 0.92
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 67 GLRGLRASGRERVPGRKPAPGLSVGAQITTNPAPRRRP-----PSSKEVRGDLGVGRIP 120
G R RA+ R PGR+ APG G + N P RP ++ RG G GR P
Sbjct: 116 GSRTPRAAERTIGPGRRGAPGRRTG-PLRENSLPVLRPGVGQTGTAPLARGSRGAGRSP 173
>gi|239750612 PREDICTED: hypothetical protein [Homo sapiens]
Length = 174
Score = 29.3 bits (64), Expect = 0.92
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 67 GLRGLRASGRERVPGRKPAPGLSVGAQITTNPAPRRRP-----PSSKEVRGDLGVGRIP 120
G R RA+ R PGR+ APG G + N P RP ++ RG G GR P
Sbjct: 116 GSRTPRAAERTIGPGRRGAPGRRTG-PLRENSLPVLRPGVGQTGTAPLARGSRGAGRSP 173
>gi|239744919 PREDICTED: hypothetical protein XP_002343307 [Homo
sapiens]
Length = 174
Score = 29.3 bits (64), Expect = 0.92
Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 67 GLRGLRASGRERVPGRKPAPGLSVGAQITTNPAPRRRP-----PSSKEVRGDLGVGRIP 120
G R RA+ R PGR+ APG G + N P RP ++ RG G GR P
Sbjct: 116 GSRTPRAAERTIGPGRRGAPGRRTG-PLRENSLPVLRPGVGQTGTAPLARGSRGAGRSP 173
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 29.3 bits (64), Expect = 0.92
Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 11/71 (15%)
Query: 57 PHLPGRRHAHGLRGLRA----SGRERVPGRKPAPGLSVGAQITTNPAPRRRPPSSKEVRG 112
P LPGR+ + G GL G PG + PGL PP +K +G
Sbjct: 505 PGLPGRQGSKGDLGLPGWLGTKGDPGPPGAEGPPGLP-------GKHGASGPPGNKGAKG 557
Query: 113 DLGVGRIPAEK 123
D+ V R+ K
Sbjct: 558 DMVVSRVKGHK 568
Score = 26.6 bits (57), Expect = 6.0
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 9/76 (11%)
Query: 57 PHLPGRRHAHGLRGLRA----SGRERVPGRKPAPGLSVGAQITTNPAPRRRP-----PSS 107
P LPGR AHG GL G + +PG G P R +P P +
Sbjct: 872 PGLPGRPGAHGPPGLPGIPGPFGDDGLPGPPGPKGPRGLPGFPGFPGERGKPGAEGCPGA 931
Query: 108 KEVRGDLGVGRIPAEK 123
K G+ G+ +P ++
Sbjct: 932 KGEPGEKGMSGLPGDR 947
>gi|195972905 zinc finger protein 385A isoform b [Homo sapiens]
Length = 305
Score = 29.3 bits (64), Expect = 0.92
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 6/64 (9%)
Query: 58 HLPGRRHAHGLRGLRAS---GRE---RVPGRKPAPGLSVGAQITTNPAPRRRPPSSKEVR 111
H G RHA ++G+ A+ GRE R PG PG + P P + + E R
Sbjct: 92 HYKGNRHARRVKGIEAAKTRGREPGVREPGDPAPPGSTPTNGDGVAPRPGTKHKTILEAR 151
Query: 112 GDLG 115
LG
Sbjct: 152 SGLG 155
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.129 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,647,259
Number of Sequences: 37866
Number of extensions: 283213
Number of successful extensions: 1297
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 128
Number of HSP's that attempted gapping in prelim test: 1203
Number of HSP's gapped (non-prelim): 251
length of query: 131
length of database: 18,247,518
effective HSP length: 91
effective length of query: 40
effective length of database: 14,801,712
effective search space: 592068480
effective search space used: 592068480
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.