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Search of human proteins with 239753202
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753202 PREDICTED: hypothetical protein [Homo sapiens]
(124 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753202 PREDICTED: hypothetical protein [Homo sapiens] 275 8e-75
gi|239747774 PREDICTED: hypothetical protein XP_002348244 [Homo ... 275 8e-75
gi|239741640 PREDICTED: hypothetical protein XP_002342268 [Homo ... 275 8e-75
gi|65508004 Wilms tumor 1 isoform D [Homo sapiens] 30 0.62
gi|65507908 Wilms tumor 1 isoform C [Homo sapiens] 30 0.62
gi|65507817 Wilms tumor 1 isoform B [Homo sapiens] 30 0.62
gi|65507714 Wilms tumor 1 isoform A [Homo sapiens] 30 0.62
gi|4557871 transferrin [Homo sapiens] 30 0.62
gi|93352551 CWF19-like 1, cell cycle control [Homo sapiens] 30 0.62
gi|239757289 PREDICTED: hypothetical protein [Homo sapiens] 29 0.81
gi|239751796 PREDICTED: hypothetical protein XP_002348004 [Homo ... 29 0.81
gi|239746287 PREDICTED: hypothetical protein XP_002343724 [Homo ... 29 0.81
gi|110735443 delta-like 1 [Homo sapiens] 29 1.1
gi|4503123 connective tissue growth factor [Homo sapiens] 29 1.1
gi|67010025 Sp4 transcription factor [Homo sapiens] 28 1.4
gi|30023847 LIM homeobox protein 3 isoform a [Homo sapiens] 28 1.4
gi|148746211 NK2 transcription factor related, locus 3 [Homo sap... 28 1.8
gi|15812196 F-box only protein 24 isoform 1 [Homo sapiens] 28 1.8
gi|126090909 engrailed homeobox 1 [Homo sapiens] 28 2.4
gi|110347457 EGF-like-domain, multiple 3 [Homo sapiens] 28 2.4
gi|190343021 Sec24-related protein D [Homo sapiens] 28 2.4
gi|197209826 chromosome 2 open reading frame 21 isoform 1 [Homo ... 27 3.1
gi|142976757 immediate early response 5 [Homo sapiens] 27 3.1
gi|239753369 PREDICTED: hypothetical protein LOC375295 [Homo sap... 27 3.1
gi|239747936 PREDICTED: hypothetical protein LOC375295 [Homo sap... 27 3.1
gi|239741831 PREDICTED: hypothetical protein [Homo sapiens] 27 3.1
gi|223646113 Sp9 transcription factor homolog [Homo sapiens] 27 4.0
gi|152963637 zinc finger protein 787 [Homo sapiens] 27 4.0
gi|28875784 armadillo repeat containing 5 isoform b [Homo sapiens] 27 4.0
gi|239756622 PREDICTED: polycystic kidney disease 1-like 3 [Homo... 27 5.2
>gi|239753202 PREDICTED: hypothetical protein [Homo sapiens]
Length = 124
Score = 275 bits (702), Expect = 8e-75
Identities = 124/124 (100%), Positives = 124/124 (100%)
Query: 1 MAVAAAVVAAAITPAATQRCDWGCTFHGGVGSSAPSDVGKEIPRCPCICPNCGCGSEAPG 60
MAVAAAVVAAAITPAATQRCDWGCTFHGGVGSSAPSDVGKEIPRCPCICPNCGCGSEAPG
Sbjct: 1 MAVAAAVVAAAITPAATQRCDWGCTFHGGVGSSAPSDVGKEIPRCPCICPNCGCGSEAPG 60
Query: 61 WQVGSFRVQLRPPSQVQDPGVSAACTLGGPRKDPYPCRLGGVCFFCLASLGSRCMLSYLS 120
WQVGSFRVQLRPPSQVQDPGVSAACTLGGPRKDPYPCRLGGVCFFCLASLGSRCMLSYLS
Sbjct: 61 WQVGSFRVQLRPPSQVQDPGVSAACTLGGPRKDPYPCRLGGVCFFCLASLGSRCMLSYLS 120
Query: 121 GGWC 124
GGWC
Sbjct: 121 GGWC 124
>gi|239747774 PREDICTED: hypothetical protein XP_002348244 [Homo
sapiens]
Length = 144
Score = 275 bits (702), Expect = 8e-75
Identities = 124/124 (100%), Positives = 124/124 (100%)
Query: 1 MAVAAAVVAAAITPAATQRCDWGCTFHGGVGSSAPSDVGKEIPRCPCICPNCGCGSEAPG 60
MAVAAAVVAAAITPAATQRCDWGCTFHGGVGSSAPSDVGKEIPRCPCICPNCGCGSEAPG
Sbjct: 21 MAVAAAVVAAAITPAATQRCDWGCTFHGGVGSSAPSDVGKEIPRCPCICPNCGCGSEAPG 80
Query: 61 WQVGSFRVQLRPPSQVQDPGVSAACTLGGPRKDPYPCRLGGVCFFCLASLGSRCMLSYLS 120
WQVGSFRVQLRPPSQVQDPGVSAACTLGGPRKDPYPCRLGGVCFFCLASLGSRCMLSYLS
Sbjct: 81 WQVGSFRVQLRPPSQVQDPGVSAACTLGGPRKDPYPCRLGGVCFFCLASLGSRCMLSYLS 140
Query: 121 GGWC 124
GGWC
Sbjct: 141 GGWC 144
>gi|239741640 PREDICTED: hypothetical protein XP_002342268 [Homo
sapiens]
Length = 144
Score = 275 bits (702), Expect = 8e-75
Identities = 124/124 (100%), Positives = 124/124 (100%)
Query: 1 MAVAAAVVAAAITPAATQRCDWGCTFHGGVGSSAPSDVGKEIPRCPCICPNCGCGSEAPG 60
MAVAAAVVAAAITPAATQRCDWGCTFHGGVGSSAPSDVGKEIPRCPCICPNCGCGSEAPG
Sbjct: 21 MAVAAAVVAAAITPAATQRCDWGCTFHGGVGSSAPSDVGKEIPRCPCICPNCGCGSEAPG 80
Query: 61 WQVGSFRVQLRPPSQVQDPGVSAACTLGGPRKDPYPCRLGGVCFFCLASLGSRCMLSYLS 120
WQVGSFRVQLRPPSQVQDPGVSAACTLGGPRKDPYPCRLGGVCFFCLASLGSRCMLSYLS
Sbjct: 81 WQVGSFRVQLRPPSQVQDPGVSAACTLGGPRKDPYPCRLGGVCFFCLASLGSRCMLSYLS 140
Query: 121 GGWC 124
GGWC
Sbjct: 141 GGWC 144
>gi|65508004 Wilms tumor 1 isoform D [Homo sapiens]
Length = 517
Score = 29.6 bits (65), Expect = 0.62
Identities = 21/75 (28%), Positives = 26/75 (34%), Gaps = 13/75 (17%)
Query: 29 GVGSSAPSDVGKEI-------PRCPCICPNCGCGSEAPGWQVGSFRVQLRPPSQVQDPGV 81
G S P +G ++ P P + GC G Q P PG
Sbjct: 60 GASGSEPQQMGSDVRDLNALLPAVPSLGGGGGCALPVSG------AAQWAPVLDFAPPGA 113
Query: 82 SAACTLGGPRKDPYP 96
SA +LGGP P P
Sbjct: 114 SAYGSLGGPAPPPAP 128
>gi|65507908 Wilms tumor 1 isoform C [Homo sapiens]
Length = 500
Score = 29.6 bits (65), Expect = 0.62
Identities = 21/75 (28%), Positives = 26/75 (34%), Gaps = 13/75 (17%)
Query: 29 GVGSSAPSDVGKEI-------PRCPCICPNCGCGSEAPGWQVGSFRVQLRPPSQVQDPGV 81
G S P +G ++ P P + GC G Q P PG
Sbjct: 60 GASGSEPQQMGSDVRDLNALLPAVPSLGGGGGCALPVSG------AAQWAPVLDFAPPGA 113
Query: 82 SAACTLGGPRKDPYP 96
SA +LGGP P P
Sbjct: 114 SAYGSLGGPAPPPAP 128
>gi|65507817 Wilms tumor 1 isoform B [Homo sapiens]
Length = 514
Score = 29.6 bits (65), Expect = 0.62
Identities = 21/75 (28%), Positives = 26/75 (34%), Gaps = 13/75 (17%)
Query: 29 GVGSSAPSDVGKEI-------PRCPCICPNCGCGSEAPGWQVGSFRVQLRPPSQVQDPGV 81
G S P +G ++ P P + GC G Q P PG
Sbjct: 60 GASGSEPQQMGSDVRDLNALLPAVPSLGGGGGCALPVSG------AAQWAPVLDFAPPGA 113
Query: 82 SAACTLGGPRKDPYP 96
SA +LGGP P P
Sbjct: 114 SAYGSLGGPAPPPAP 128
>gi|65507714 Wilms tumor 1 isoform A [Homo sapiens]
Length = 497
Score = 29.6 bits (65), Expect = 0.62
Identities = 21/75 (28%), Positives = 26/75 (34%), Gaps = 13/75 (17%)
Query: 29 GVGSSAPSDVGKEI-------PRCPCICPNCGCGSEAPGWQVGSFRVQLRPPSQVQDPGV 81
G S P +G ++ P P + GC G Q P PG
Sbjct: 60 GASGSEPQQMGSDVRDLNALLPAVPSLGGGGGCALPVSG------AAQWAPVLDFAPPGA 113
Query: 82 SAACTLGGPRKDPYP 96
SA +LGGP P P
Sbjct: 114 SAYGSLGGPAPPPAP 128
>gi|4557871 transferrin [Homo sapiens]
Length = 698
Score = 29.6 bits (65), Expect = 0.62
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 31 GSSAPSDVGKEIPRCPCICPNCGCGS 56
GS AP G + P+ +CP CGC +
Sbjct: 175 GSCAPCADGTDFPQLCQLCPGCGCST 200
>gi|93352551 CWF19-like 1, cell cycle control [Homo sapiens]
Length = 538
Score = 29.6 bits (65), Expect = 0.62
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 13/43 (30%)
Query: 90 PRKDPYPCRLGGVCFFCLAS----------LGSRCMLSYLSGG 122
PRK P P G C+FCLAS +G+ C L+ GG
Sbjct: 318 PRKPPQP---PGPCWFCLASPEVEKHLVVNIGTHCYLALAKGG 357
>gi|239757289 PREDICTED: hypothetical protein [Homo sapiens]
Length = 545
Score = 29.3 bits (64), Expect = 0.81
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 13/99 (13%)
Query: 1 MAVAAAVVAAAIT---PAATQRCDWGCTFHGGVGSSAPSDVGKEIPRCPCICPNCGCGSE 57
+AVA A V + PAA + C GV +A +P CP P S+
Sbjct: 418 VAVATAWVPVPVALAGPAAPRAC--------GVAEAAGPASFAVLPPCPGCLP--WHSSQ 467
Query: 58 APGWQVGSFRVQLRPPSQVQDPGVSAACTLGGPRKDPYP 96
PG ++ + +L+P S+ Q +GG R D P
Sbjct: 468 KPGPRLRQWLWKLQPQSREQRGAGGPGAGVGGGRSDVQP 506
>gi|239751796 PREDICTED: hypothetical protein XP_002348004 [Homo
sapiens]
Length = 291
Score = 29.3 bits (64), Expect = 0.81
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 13/99 (13%)
Query: 1 MAVAAAVVAAAIT---PAATQRCDWGCTFHGGVGSSAPSDVGKEIPRCPCICPNCGCGSE 57
+AVA A V + PAA + C GV +A +P CP P S+
Sbjct: 164 VAVATAWVPVPVALAGPAAPRAC--------GVAEAAGPASFAVLPPCPGCLP--WHSSQ 213
Query: 58 APGWQVGSFRVQLRPPSQVQDPGVSAACTLGGPRKDPYP 96
PG ++ + +L+P S+ Q +GG R D P
Sbjct: 214 KPGPRLRQWLWKLQPQSREQRGAGGPGAGVGGGRSDVQP 252
>gi|239746287 PREDICTED: hypothetical protein XP_002343724 [Homo
sapiens]
Length = 291
Score = 29.3 bits (64), Expect = 0.81
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 13/99 (13%)
Query: 1 MAVAAAVVAAAIT---PAATQRCDWGCTFHGGVGSSAPSDVGKEIPRCPCICPNCGCGSE 57
+AVA A V + PAA + C GV +A +P CP P S+
Sbjct: 164 VAVATAWVPVPVALAGPAAPRAC--------GVAEAAGPASFAVLPPCPGCLP--WHSSQ 213
Query: 58 APGWQVGSFRVQLRPPSQVQDPGVSAACTLGGPRKDPYP 96
PG ++ + +L+P S+ Q +GG R D P
Sbjct: 214 KPGPRLRQWLWKLQPQSREQRGAGGPGAGVGGGRSDVQP 252
>gi|110735443 delta-like 1 [Homo sapiens]
Length = 723
Score = 28.9 bits (63), Expect = 1.1
Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 6/52 (11%)
Query: 52 CGCGSEAPGWQVGSFRVQLRPPSQVQDPGVSAACTLGGPRKDPYPCRLGGVC 103
C G+ GS+ RP A C LG DP PC+ GG C
Sbjct: 298 CKNGATCTNTGQGSYTCSCRPGY------TGATCELGIDECDPSPCKNGGSC 343
>gi|4503123 connective tissue growth factor [Homo sapiens]
Length = 349
Score = 28.9 bits (63), Expect = 1.1
Identities = 31/121 (25%), Positives = 38/121 (31%), Gaps = 29/121 (23%)
Query: 7 VVAAAITPAATQRCDWGCTFHGGVGSSAPSDVGKEIPRCPC----ICPNCGCGSEAPGWQ 62
++A PA Q C C P + PRCP + CGC Q
Sbjct: 16 LLALCSRPAVGQNCSGPC--------RCPDE---PAPRCPAGVSLVLDGCGC-CRVCAKQ 63
Query: 63 VGSFRVQLRPPSQVQDPGVSAACTLGGP---------RKDPYPCRLGGVCFFCLASLGSR 113
+G + P DP C G P KD PC GG + S S
Sbjct: 64 LGELCTERDP----CDPHKGLFCDFGSPANRKIGVCTAKDGAPCIFGGTVYRSGESFQSS 119
Query: 114 C 114
C
Sbjct: 120 C 120
>gi|67010025 Sp4 transcription factor [Homo sapiens]
Length = 784
Score = 28.5 bits (62), Expect = 1.4
Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
Query: 39 GKEIPRCPCICPNC----GCGSEAPG 60
GK + R C CPNC G GS PG
Sbjct: 617 GKRLRRVACSCPNCREGEGRGSNEPG 642
>gi|30023847 LIM homeobox protein 3 isoform a [Homo sapiens]
Length = 397
Score = 28.5 bits (62), Expect = 1.4
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 79 PGVSAACTLGGPRKDPYPCRLGGVCFFCLASLGSRCMLSYLSGGW 123
PG +A CTLGG R+ P +C C + R +L L W
Sbjct: 14 PGAAAVCTLGGTREIP-------LCAGCDQHILDRFILKALDRHW 51
>gi|148746211 NK2 transcription factor related, locus 3 [Homo
sapiens]
Length = 364
Score = 28.1 bits (61), Expect = 1.8
Identities = 24/87 (27%), Positives = 27/87 (31%), Gaps = 1/87 (1%)
Query: 2 AVAAAVVAAAITPAATQRCDWGCTFHGGVGSSAPSDVGKEIPRCPCICPNCGCGSEAPGW 61
A AAA AAA AA +GC + G G P C G G
Sbjct: 271 AAAAAAAAAAAAAAAAYSSSYGCAYPAGGGGGGGGTSAATTAMQPA-CSAAGGGPFVNVS 329
Query: 62 QVGSFRVQLRPPSQVQDPGVSAACTLG 88
+G F Q AAC G
Sbjct: 330 NLGGFGSGGSAQPLHQGTAAGAACAQG 356
>gi|15812196 F-box only protein 24 isoform 1 [Homo sapiens]
Length = 580
Score = 28.1 bits (61), Expect = 1.8
Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 8/53 (15%)
Query: 24 CTFHGGVGSSAPSDVGKEIPRCPCICPNCGCGSEAPGWQVGS---FRVQLRPP 73
C + + S S+ KE+ C CG G PGW GS ++Q++ P
Sbjct: 414 CGLNHSLVLSQSSEFSKELLGC-----GCGAGGRLPGWPKGSASFVKLQVKVP 461
>gi|126090909 engrailed homeobox 1 [Homo sapiens]
Length = 392
Score = 27.7 bits (60), Expect = 2.4
Identities = 18/42 (42%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 2 AVAAAVVAAAITPAATQRCDWGCTFHGGVGSSAPSDVGKEIP 43
A AAA VAAA AA + D G GG G+ +P G + P
Sbjct: 203 AAAAAAVAAAAAAAAAKPSDTGGGGSGG-GAGSPGAQGTKYP 243
>gi|110347457 EGF-like-domain, multiple 3 [Homo sapiens]
Length = 1541
Score = 27.7 bits (60), Expect = 2.4
Identities = 31/106 (29%), Positives = 37/106 (34%), Gaps = 24/106 (22%)
Query: 20 CDWGCTFHGGVG-SSAPSDVGKEIPRCPCICPNCGCGSEAPGWQVGSFRVQLRPPSQVQD 78
C CT GV S + GK RCP CG E P VG+F V
Sbjct: 695 CWQACTCPVGVACDSVSGECGK---RCPAGFQGEDCGQECP---VGTFGV---------- 738
Query: 79 PGVSAACTLGGPRKDPYPCR-LGGVCFFCLASLGSRCMLSYLSGGW 123
S++C+ GG PC + G C G C G W
Sbjct: 739 -NCSSSCSCGGA-----PCHGVTGQCRCPPGRTGEDCEADCPEGRW 778
>gi|190343021 Sec24-related protein D [Homo sapiens]
Length = 1032
Score = 27.7 bits (60), Expect = 2.4
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 55 GSEAPGWQVGSFRVQLRPPSQVQDPGVSAACTLGGPRKDPYP 96
GS+ Q+ S+ + PPSQ PG +A +L P + P P
Sbjct: 121 GSQLSAMQINSYGSGMAPPSQ-GPPGPLSATSLQTPPRPPQP 161
>gi|197209826 chromosome 2 open reading frame 21 isoform 1 [Homo
sapiens]
Length = 3258
Score = 27.3 bits (59), Expect = 3.1
Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 11 AITPAAT-QRCDWGCTFHGGVGSSAPSDVGKEIPRCPCICPNCGCGSEAPGWQVGSFRVQ 69
+I+P AT C G +F G + S + G R + P C A + V R
Sbjct: 279 SISPKATISGCHRGNSFDGSLSSQTSQERGPSHSRASLVIPPCQRSRYATYFDVAVLRCL 338
Query: 70 LRP 72
L+P
Sbjct: 339 LQP 341
>gi|142976757 immediate early response 5 [Homo sapiens]
Length = 327
Score = 27.3 bits (59), Expect = 3.1
Identities = 17/52 (32%), Positives = 19/52 (36%), Gaps = 9/52 (17%)
Query: 13 TPAATQRCDWGCTFHGGVGSSAPSDVGKEIPRCPCICPNCGCGSEAPGWQVG 64
TPAAT R C AP E P P +CP C + G G
Sbjct: 188 TPAATPRAACCC---------APQPAEDEPPAPPAVCPRKRCAAGVGGGPAG 230
>gi|239753369 PREDICTED: hypothetical protein LOC375295 [Homo
sapiens]
Length = 262
Score = 27.3 bits (59), Expect = 3.1
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 65 SFRVQLRPPSQVQDPGVSAACTLGGPRKDPYPCRLGGVCFFCLASL 110
S RVQ+RP V PGV + PR +P G + LA+L
Sbjct: 94 SLRVQVRPGLDVAAPGVCSLSCPSPPRSSAHPGPRGPLFPALLAAL 139
>gi|239747936 PREDICTED: hypothetical protein LOC375295 [Homo
sapiens]
Length = 262
Score = 27.3 bits (59), Expect = 3.1
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 65 SFRVQLRPPSQVQDPGVSAACTLGGPRKDPYPCRLGGVCFFCLASL 110
S RVQ+RP V PGV + PR +P G + LA+L
Sbjct: 94 SLRVQVRPGLDVAAPGVCSLSCPSPPRSSAHPGPRGPLFPALLAAL 139
>gi|239741831 PREDICTED: hypothetical protein [Homo sapiens]
Length = 257
Score = 27.3 bits (59), Expect = 3.1
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 65 SFRVQLRPPSQVQDPGVSAACTLGGPRKDPYPCRLGGVCFFCLASL 110
S RVQ+RP V PGV + PR +P G + LA+L
Sbjct: 94 SLRVQVRPGLDVAAPGVCSLSCPSPPRSSAHPGPRGPLFPALLAAL 139
>gi|223646113 Sp9 transcription factor homolog [Homo sapiens]
Length = 484
Score = 26.9 bits (58), Expect = 4.0
Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 10/51 (19%)
Query: 2 AVAAAVVAAAITPAATQRCDWGCTFHGGVGSSAPSDVGKEIPRCPCICPNC 52
AVAAA +A I+ AA G S+ + R C CPNC
Sbjct: 273 AVAAAAASAMISGAAA----------AAAGGSSARSARRYSGRATCDCPNC 313
>gi|152963637 zinc finger protein 787 [Homo sapiens]
Length = 382
Score = 26.9 bits (58), Expect = 4.0
Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 4/51 (7%)
Query: 46 PCICPNCGCGSEAPGWQVGSFRVQLRPPSQVQDPGVSAACTLGGPRKDPYP 96
P +CP CG G P S LR ++ PGV+A R+ P
Sbjct: 177 PFVCPRCGRGFSQP----KSLARHLRLHPELSGPGVAAKVLAASVRRAKGP 223
>gi|28875784 armadillo repeat containing 5 isoform b [Homo sapiens]
Length = 725
Score = 26.9 bits (58), Expect = 4.0
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 58 APGWQVGSFRVQLRPPSQVQDPGVSAACTLG----GPRKDPYPCRLGGVCFFCLASLGS 112
+P W G V + P + Q VS+A LG R P P G+CFF +++GS
Sbjct: 665 SPEWG-GEQGVPVPPWAHRQSSAVSSALALGPRYPNSRCSPAPRIWAGLCFFPGSAIGS 722
>gi|239756622 PREDICTED: polycystic kidney disease 1-like 3 [Homo
sapiens]
Length = 1732
Score = 26.6 bits (57), Expect = 5.2
Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 4/62 (6%)
Query: 57 EAPGWQVGSFRVQLRPPSQVQDPGVSAACTLGGPRKDPYPCRLGGVCFFCLASLGSRCML 116
E W +G + P + QD A GP K P C F ++S G +C+L
Sbjct: 76 EGKKWWIGQ---NVMPLKKHQDNKYPADVAANGPPK-PLSCTYLSRNFIRISSKGDKCLL 131
Query: 117 SY 118
Y
Sbjct: 132 KY 133
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.139 0.500
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,130,478
Number of Sequences: 37866
Number of extensions: 321469
Number of successful extensions: 1281
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1262
Number of HSP's gapped (non-prelim): 53
length of query: 124
length of database: 18,247,518
effective HSP length: 89
effective length of query: 35
effective length of database: 14,877,444
effective search space: 520710540
effective search space used: 520710540
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.