Guide to the Human Genome
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Name: LOC100289658 Sequence: fasta or formatted (144aa) NCBI GI: 239741640
Description:

PREDICTED: hypothetical protein XP_002342268

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.4         15           3
 C cysteine            9.0         13           1
 D aspartate           3.5          5           1
 E glutamate           1.4          2           1
 F phenylalanine       2.8          4           2
 G glycine            11.8         17           2
 H histidine           0.7          1           1
 I isoleucine          2.8          4           1
 K lysine              1.4          2           1
 L leucine             6.2          9           1
 M methionine          4.2          6           2
 N asparagine          1.4          2           1
 P proline             9.0         13           2
 Q glutamine           3.5          5           1
 R arginine            4.9          7           1
 S serine              9.0         13           2
 T threonine           4.9          7           1
 V valine              7.6         11           2
 W tryptophan          2.1          3           1
 Y tyrosine            3.5          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342268 
LOC100291548          1.000   PREDICTED: hypothetical protein XP_002348244 
LOC100293764          0.865   PREDICTED: hypothetical protein 
LOC100293892          0.028   PREDICTED: hypothetical protein 
LOC100289756          0.028   PREDICTED: hypothetical protein XP_002348004 
LOC100286981          0.028   PREDICTED: hypothetical protein XP_002343724 
WT1                   0.017   Wilms tumor 1 isoform D 
WT1                   0.017   Wilms tumor 1 isoform C 
WT1                   0.017   Wilms tumor 1 isoform B 
WT1                   0.017   Wilms tumor 1 isoform A 
TF                    0.017   transferrin 
CWF19L1               0.017   CWF19-like 1, cell cycle control 
EN1                   0.014   engrailed homeobox 1 
DLL1                  0.014   delta-like 1 
CTGF                  0.014   connective tissue growth factor 
C2orf21               0.010   chromosome 2 open reading frame 21 isoform 1 
SP4                   0.010   Sp4 transcription factor 
LHX3                  0.010   LIM homeobox protein 3 isoform a 
NKX2-3                0.010   NK2 transcription factor related, locus 3 
FBXO24                0.010   F-box only protein 24 isoform 1 
MEGF6                 0.010   EGF-like-domain, multiple 3 
SEC24D                0.010   Sec24-related protein D 
IER5                  0.007   immediate early response 5 
LOC375295             0.007   PREDICTED: hypothetical protein LOC375295 
LOC375295             0.007   PREDICTED: hypothetical protein LOC375295 
LOC375295             0.007   PREDICTED: hypothetical protein 
SP9                   0.007   Sp9 transcription factor homolog 
ZNF787                0.007   zinc finger protein 787 
ARMC5                 0.007   armadillo repeat containing 5 isoform b 
MYCL1                 0.007   l-myc-1 proto-oncogene isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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