Guide to the Human Genome
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Name: LOC100293764 Sequence: fasta or formatted (124aa) NCBI GI: 239753202
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.3         14           3
 C cysteine           10.5         13           1
 D aspartate           3.2          4           1
 E glutamate           1.6          2           1
 F phenylalanine       3.2          4           2
 G glycine            13.7         17           2
 H histidine           0.8          1           1
 I isoleucine          2.4          3           1
 K lysine              1.6          2           1
 L leucine             5.6          7           1
 M methionine          1.6          2           1
 N asparagine          0.8          1           1
 P proline             9.7         12           2
 Q glutamine           4.0          5           1
 R arginine            5.6          7           1
 S serine              8.9         11           2
 T threonine           3.2          4           1
 V valine              8.1         10           2
 W tryptophan          2.4          3           1
 Y tyrosine            1.6          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291548          1.000   PREDICTED: hypothetical protein XP_002348244 
LOC100289658          1.000   PREDICTED: hypothetical protein XP_002342268 
WT1                   0.020   Wilms tumor 1 isoform D 
WT1                   0.020   Wilms tumor 1 isoform C 
WT1                   0.020   Wilms tumor 1 isoform B 
WT1                   0.020   Wilms tumor 1 isoform A 
TF                    0.020   transferrin 
CWF19L1               0.020   CWF19-like 1, cell cycle control 
LOC100293892          0.016   PREDICTED: hypothetical protein 
LOC100289756          0.016   PREDICTED: hypothetical protein XP_002348004 
LOC100286981          0.016   PREDICTED: hypothetical protein XP_002343724 
DLL1                  0.016   delta-like 1 
CTGF                  0.016   connective tissue growth factor 
SP4                   0.012   Sp4 transcription factor 
LHX3                  0.012   LIM homeobox protein 3 isoform a 
NKX2-3                0.012   NK2 transcription factor related, locus 3 
FBXO24                0.012   F-box only protein 24 isoform 1 
EN1                   0.012   engrailed homeobox 1 
MEGF6                 0.012   EGF-like-domain, multiple 3 
SEC24D                0.012   Sec24-related protein D 
C2orf21               0.008   chromosome 2 open reading frame 21 isoform 1 
IER5                  0.008   immediate early response 5 
LOC375295             0.008   PREDICTED: hypothetical protein LOC375295 
LOC375295             0.008   PREDICTED: hypothetical protein LOC375295 
LOC375295             0.008   PREDICTED: hypothetical protein 
SP9                   0.008   Sp9 transcription factor homolog 
ZNF787                0.008   zinc finger protein 787 
ARMC5                 0.008   armadillo repeat containing 5 isoform b 
PKD1L3                0.008   PREDICTED: polycystic kidney disease 1-like 3 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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