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Search of human proteins with 239753198
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753198 PREDICTED: hypothetical protein [Homo sapiens]
(104 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753198 PREDICTED: hypothetical protein [Homo sapiens] 209 5e-55
gi|239747772 PREDICTED: hypothetical protein [Homo sapiens] 209 5e-55
gi|239741638 PREDICTED: hypothetical protein [Homo sapiens] 209 5e-55
gi|22208979 high mobility group AT-hook 1 isoform b [Homo sapiens] 179 5e-46
gi|22208973 high mobility group AT-hook 1 isoform b [Homo sapiens] 179 5e-46
gi|4504433 high mobility group AT-hook 1 isoform b [Homo sapiens] 179 5e-46
gi|22208975 high mobility group AT-hook 1 isoform b [Homo sapiens] 179 5e-46
gi|22208971 high mobility group AT-hook 1 isoform a [Homo sapiens] 170 2e-43
gi|22208967 high mobility group AT-hook 1 isoform a [Homo sapiens] 170 2e-43
gi|4504431 high mobility group AT-hook 2 isoform a [Homo sapiens] 76 5e-15
gi|62912482 high mobility group AT-hook 2 isoform b [Homo sapiens] 72 7e-14
gi|145199237 transcription elongation factor B polypeptide 3 bin... 45 2e-05
gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II, pol... 39 0.001
gi|7662238 apoptotic chromatin condensation inducer 1 [Homo sapi... 37 0.003
gi|239749449 PREDICTED: hypothetical protein [Homo sapiens] 37 0.004
gi|118601070 hypothetical protein LOC158724 [Homo sapiens] 37 0.004
gi|125656165 THO complex 2 [Homo sapiens] 36 0.006
gi|239748099 PREDICTED: hypothetical protein [Homo sapiens] 36 0.006
gi|239741995 PREDICTED: hypothetical protein XP_002342368 [Homo ... 36 0.006
gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens] 36 0.006
gi|239750213 PREDICTED: hypothetical protein [Homo sapiens] 36 0.007
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 35 0.010
gi|190014588 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo... 35 0.013
gi|190014586 PC4 and SFRS1 interacting protein 1 isoform 1 [Homo... 35 0.013
gi|19923653 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo ... 35 0.013
gi|4885375 histone cluster 1, H1c [Homo sapiens] 35 0.013
gi|54112403 chromodomain helicase DNA binding protein 7 [Homo sa... 35 0.017
gi|38488727 arginine/serine-rich coiled-coil 1 [Homo sapiens] 35 0.017
gi|116089325 splicing factor, arginine/serine-rich 12 isoform a ... 35 0.017
gi|21040255 splicing factor, arginine/serine-rich 12 isoform b [... 35 0.017
>gi|239753198 PREDICTED: hypothetical protein [Homo sapiens]
Length = 104
Score = 209 bits (531), Expect = 5e-55
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 MSESSSKSSQPLASKQKKDGTEKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKGAAK 60
MSESSSKSSQPLASKQKKDGTEKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKGAAK
Sbjct: 1 MSESSSKSSQPLASKQKKDGTEKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKGAAK 60
Query: 61 TGKTTTTLGRKPRGRPKKLEKEEEKGISQESSLEEQLPSGTGQL 104
TGKTTTTLGRKPRGRPKKLEKEEEKGISQESSLEEQLPSGTGQL
Sbjct: 61 TGKTTTTLGRKPRGRPKKLEKEEEKGISQESSLEEQLPSGTGQL 104
>gi|239747772 PREDICTED: hypothetical protein [Homo sapiens]
Length = 104
Score = 209 bits (531), Expect = 5e-55
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 MSESSSKSSQPLASKQKKDGTEKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKGAAK 60
MSESSSKSSQPLASKQKKDGTEKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKGAAK
Sbjct: 1 MSESSSKSSQPLASKQKKDGTEKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKGAAK 60
Query: 61 TGKTTTTLGRKPRGRPKKLEKEEEKGISQESSLEEQLPSGTGQL 104
TGKTTTTLGRKPRGRPKKLEKEEEKGISQESSLEEQLPSGTGQL
Sbjct: 61 TGKTTTTLGRKPRGRPKKLEKEEEKGISQESSLEEQLPSGTGQL 104
>gi|239741638 PREDICTED: hypothetical protein [Homo sapiens]
Length = 104
Score = 209 bits (531), Expect = 5e-55
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 MSESSSKSSQPLASKQKKDGTEKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKGAAK 60
MSESSSKSSQPLASKQKKDGTEKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKGAAK
Sbjct: 1 MSESSSKSSQPLASKQKKDGTEKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKGAAK 60
Query: 61 TGKTTTTLGRKPRGRPKKLEKEEEKGISQESSLEEQLPSGTGQL 104
TGKTTTTLGRKPRGRPKKLEKEEEKGISQESSLEEQLPSGTGQL
Sbjct: 61 TGKTTTTLGRKPRGRPKKLEKEEEKGISQESSLEEQLPSGTGQL 104
>gi|22208979 high mobility group AT-hook 1 isoform b [Homo
sapiens]
Length = 96
Score = 179 bits (453), Expect = 5e-46
Identities = 90/96 (93%), Positives = 92/96 (95%)
Query: 1 MSESSSKSSQPLASKQKKDGTEKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKGAAK 60
MSESSSKSSQPLASKQ+KDGTEKRGRGRPRKQPPKE SEVPTPKRPRGRPKGSKNKGAAK
Sbjct: 1 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAK 60
Query: 61 TGKTTTTLGRKPRGRPKKLEKEEEKGISQESSLEEQ 96
T KTTTT GRKPRGRPKKLEKEEE+GISQESS EEQ
Sbjct: 61 TRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
>gi|22208973 high mobility group AT-hook 1 isoform b [Homo
sapiens]
Length = 96
Score = 179 bits (453), Expect = 5e-46
Identities = 90/96 (93%), Positives = 92/96 (95%)
Query: 1 MSESSSKSSQPLASKQKKDGTEKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKGAAK 60
MSESSSKSSQPLASKQ+KDGTEKRGRGRPRKQPPKE SEVPTPKRPRGRPKGSKNKGAAK
Sbjct: 1 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAK 60
Query: 61 TGKTTTTLGRKPRGRPKKLEKEEEKGISQESSLEEQ 96
T KTTTT GRKPRGRPKKLEKEEE+GISQESS EEQ
Sbjct: 61 TRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
>gi|4504433 high mobility group AT-hook 1 isoform b [Homo sapiens]
Length = 96
Score = 179 bits (453), Expect = 5e-46
Identities = 90/96 (93%), Positives = 92/96 (95%)
Query: 1 MSESSSKSSQPLASKQKKDGTEKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKGAAK 60
MSESSSKSSQPLASKQ+KDGTEKRGRGRPRKQPPKE SEVPTPKRPRGRPKGSKNKGAAK
Sbjct: 1 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAK 60
Query: 61 TGKTTTTLGRKPRGRPKKLEKEEEKGISQESSLEEQ 96
T KTTTT GRKPRGRPKKLEKEEE+GISQESS EEQ
Sbjct: 61 TRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
>gi|22208975 high mobility group AT-hook 1 isoform b [Homo
sapiens]
Length = 96
Score = 179 bits (453), Expect = 5e-46
Identities = 90/96 (93%), Positives = 92/96 (95%)
Query: 1 MSESSSKSSQPLASKQKKDGTEKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKGAAK 60
MSESSSKSSQPLASKQ+KDGTEKRGRGRPRKQPPKE SEVPTPKRPRGRPKGSKNKGAAK
Sbjct: 1 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKGAAK 60
Query: 61 TGKTTTTLGRKPRGRPKKLEKEEEKGISQESSLEEQ 96
T KTTTT GRKPRGRPKKLEKEEE+GISQESS EEQ
Sbjct: 61 TRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 96
>gi|22208971 high mobility group AT-hook 1 isoform a [Homo sapiens]
Length = 107
Score = 170 bits (431), Expect = 2e-43
Identities = 90/107 (84%), Positives = 92/107 (85%), Gaps = 11/107 (10%)
Query: 1 MSESSSKSSQPLASKQKKDGTEKRGRGRPRKQPP-----------KELSEVPTPKRPRGR 49
MSESSSKSSQPLASKQ+KDGTEKRGRGRPRKQPP KE SEVPTPKRPRGR
Sbjct: 1 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR 60
Query: 50 PKGSKNKGAAKTGKTTTTLGRKPRGRPKKLEKEEEKGISQESSLEEQ 96
PKGSKNKGAAKT KTTTT GRKPRGRPKKLEKEEE+GISQESS EEQ
Sbjct: 61 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 107
>gi|22208967 high mobility group AT-hook 1 isoform a [Homo sapiens]
Length = 107
Score = 170 bits (431), Expect = 2e-43
Identities = 90/107 (84%), Positives = 92/107 (85%), Gaps = 11/107 (10%)
Query: 1 MSESSSKSSQPLASKQKKDGTEKRGRGRPRKQPP-----------KELSEVPTPKRPRGR 49
MSESSSKSSQPLASKQ+KDGTEKRGRGRPRKQPP KE SEVPTPKRPRGR
Sbjct: 1 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR 60
Query: 50 PKGSKNKGAAKTGKTTTTLGRKPRGRPKKLEKEEEKGISQESSLEEQ 96
PKGSKNKGAAKT KTTTT GRKPRGRPKKLEKEEE+GISQESS EEQ
Sbjct: 61 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ 107
>gi|4504431 high mobility group AT-hook 2 isoform a [Homo sapiens]
Length = 109
Score = 76.3 bits (186), Expect = 5e-15
Identities = 48/110 (43%), Positives = 62/110 (56%), Gaps = 16/110 (14%)
Query: 1 MSESSSKSSQPLASKQKKDGT---EKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKG 57
MS + QP S Q + +KRGRGRPRKQ + E P+PKRPRGRPKGSKNK
Sbjct: 1 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGE-PSPKRPRGRPKGSKNKS 59
Query: 58 AAKTG--KTTTTLGRKPRGRPKK----------LEKEEEKGISQESSLEE 95
+K K T ++PRGRP+K ++E E+ SQES+ E+
Sbjct: 60 PSKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQESAEED 109
>gi|62912482 high mobility group AT-hook 2 isoform b [Homo
sapiens]
Length = 106
Score = 72.4 bits (176), Expect = 7e-14
Identities = 41/83 (49%), Positives = 50/83 (60%), Gaps = 6/83 (7%)
Query: 1 MSESSSKSSQPLASKQKKDGT---EKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKG 57
MS + QP S Q + +KRGRGRPRKQ + E P+PKRPRGRPKGSKNK
Sbjct: 1 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGE-PSPKRPRGRPKGSKNKS 59
Query: 58 AAKTG--KTTTTLGRKPRGRPKK 78
+K K T ++PRGRP+K
Sbjct: 60 PSKAAQKKAEATGEKRPRGRPRK 82
>gi|145199237 transcription elongation factor B polypeptide 3
binding protein 1 [Homo sapiens]
Length = 1221
Score = 44.7 bits (104), Expect = 2e-05
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 16 QKKDGTEKRGRGRPRKQP--PKELSEVPTPKRPRGRPKGSKNKGAAKTGKTTTTLGR--K 71
Q KD T+ +GRGRP ++P K+ + +P+R RP+G+K K ++ T T+ GR +
Sbjct: 394 QGKDKTKDKGRGRPVEKPRADKKGPQASSPRRKAERPEGTKKKPSSATPVATSGKGRPDR 453
Query: 72 PRGRPKKLEKEEEKGISQESSLEEQLP 98
P RP + + QLP
Sbjct: 454 PARRPSPTSGDSRPAAGRGPPRPLQLP 480
>gi|67188445 CTD (carboxy-terminal domain, RNA polymerase II,
polypeptide A) phosphatase, subunit 1 isoform FCP1a
[Homo sapiens]
Length = 961
Score = 38.5 bits (88), Expect = 0.001
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 3/67 (4%)
Query: 31 KQPPKELSEVPTPKRPRGRPKGSKNKGAAKTGKTTTTLGRKPRGRPKKLEKEEEKG-ISQ 89
K+ P+E E P P++P R + + GA + + + GR PRG +KL +E+ S+
Sbjct: 876 KRRPEEQEEEPQPRKPGTRRE--RTLGAPASSERSAAGGRGPRGHKRKLNEEDAASESSR 933
Query: 90 ESSLEEQ 96
ESS E++
Sbjct: 934 ESSNEDE 940
Score = 28.5 bits (62), Expect = 1.2
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 2 SESSSKSSQPLASKQKKDGTEK--RGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKGAA 59
SESSS+S +S DG + RGR +P+ P + GRP G A
Sbjct: 458 SESSSESEGTKSSSSASDGESEGKRGRQKPKAAPEGAGALAQGSSLEPGRPAAPSLPGEA 517
Query: 60 KTG 62
+ G
Sbjct: 518 EPG 520
>gi|7662238 apoptotic chromatin condensation inducer 1 [Homo
sapiens]
Length = 1341
Score = 37.0 bits (84), Expect = 0.003
Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 4/91 (4%)
Query: 2 SESSSKSSQPLASKQKKDGTEKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKGAAKT 61
S SSS SS S+ + + P + +++++ T PRGRPK G+ T
Sbjct: 579 SRSSSSSSSSSRSRSRSPDSSGSRSHSPLRSKQRDVAQARTHANPRGRPK----MGSRST 634
Query: 62 GKTTTTLGRKPRGRPKKLEKEEEKGISQESS 92
++ + + R K G+S++SS
Sbjct: 635 SESRSRSRSRSRSASSNSRKSLSPGVSRDSS 665
>gi|239749449 PREDICTED: hypothetical protein [Homo sapiens]
Length = 275
Score = 36.6 bits (83), Expect = 0.004
Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 6/94 (6%)
Query: 3 ESSSKSSQPLASKQKKDGTEKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKGAAKTG 62
ES K + K+K++ ++R R R +K+ K KR RG+ + K K K
Sbjct: 33 ESERKKERREREKRKREREKERKRERGKKEKKKR------KKRERGKERERKRKEREKQR 86
Query: 63 KTTTTLGRKPRGRPKKLEKEEEKGISQESSLEEQ 96
K R+ R + KK + +++G + +E+
Sbjct: 87 KERREKERRKRKKEKKKRERKQRGRRERKKKKER 120
Score = 34.7 bits (78), Expect = 0.017
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 9/77 (11%)
Query: 15 KQKKDGTEKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKGAAKTGKTTTTLGRKPRG 74
K++K +KR RG+ R++ KE + +R + R K K K + RK RG
Sbjct: 60 KKEKKKRKKRERGKERERKRKEREKQRKERREKERRKRKKEKKKRE---------RKQRG 110
Query: 75 RPKKLEKEEEKGISQES 91
R ++ +K+E K +E+
Sbjct: 111 RRERKKKKERKEREREN 127
Score = 33.9 bits (76), Expect = 0.028
Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 15 KQKKDGTEKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKGAAKTGKTTTTLGRKPRG 74
K+K++ ++ R R +K+ KE +R R R K K K K K G++ R
Sbjct: 101 KKKRERKQRGRRERKKKKERKERERENKQRRERKRKKRRKKK-RRKERKREKERGKRERK 159
Query: 75 RPKKLEKEEEK 85
R K+ ++E EK
Sbjct: 160 RKKRKKEEREK 170
Score = 30.0 bits (66), Expect = 0.41
Identities = 18/82 (21%), Positives = 37/82 (45%)
Query: 4 SSSKSSQPLASKQKKDGTEKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKGAAKTGK 63
S S S+P ++ + E+R R + +++ KE K + R K + K + K
Sbjct: 21 SCSHISKPCTQRESERKKERREREKRKREREKERKRERGKKEKKKRKKRERGKERERKRK 80
Query: 64 TTTTLGRKPRGRPKKLEKEEEK 85
++ R + ++ K+E+K
Sbjct: 81 EREKQRKERREKERRKRKKEKK 102
>gi|118601070 hypothetical protein LOC158724 [Homo sapiens]
Length = 791
Score = 36.6 bits (83), Expect = 0.004
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
Query: 15 KQKKDGTE--KRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKGAAKTGKTTTTLGRKP 72
K+ K+ TE K G P QPP+ P P+ P+ R + S + KT +T++ P
Sbjct: 450 KKTKEPTEPHKSPCGEPCLQPPETQVSHPHPEHPKTRRRSSLHSQPPKTRRTSSLRSEPP 509
Query: 73 RGRPKKLEKEEEKGISQESSLEEQLP 98
+ R + E + SSL + P
Sbjct: 510 KTRRTSSLRSEPPKTRRTSSLGPEPP 535
>gi|125656165 THO complex 2 [Homo sapiens]
Length = 1593
Score = 36.2 bits (82), Expect = 0.006
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 5/102 (4%)
Query: 3 ESSSKSSQPLASKQKKDGTEKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKGAAKTG 62
+ + ++ P A KDG EK RP K ++ TPK + + K K + AK
Sbjct: 1282 KEKTPATTPEARVLGKDGKEKPKEERPNKDEKARETKERTPKSDKEKEKFKKEE-KAKDE 1340
Query: 63 KTTTTL----GRKPRGRPKKLEKEEEKGISQESSLEEQLPSG 100
K TT+ + + R ++ E E+ I++E +E + G
Sbjct: 1341 KFKTTVPNAESKSTQEREREKEPSRERDIAKEMKSKENVKGG 1382
Score = 30.0 bits (66), Expect = 0.41
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 6 SKSSQPLASKQKKDGTEKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKGAAKTGKTT 65
S SS ASK + TE+ + R R Q + + P+G S N +
Sbjct: 1209 SSSSIGSASKSDESSTEETDKSRERSQCGVKAVNKASSTTPKG---NSSNGNSGSNSNKA 1265
Query: 66 TTLGRKPRGRPKKLEKEEE 84
K +G+ K+ EK+E+
Sbjct: 1266 VKENDKEKGKEKEKEKKEK 1284
Score = 28.9 bits (63), Expect = 0.91
Identities = 21/91 (23%), Positives = 43/91 (47%), Gaps = 6/91 (6%)
Query: 4 SSSKSSQPLASKQKKD-----GTEKRGRGRPRKQP-PKELSEVPTPKRPRGRPKGSKNKG 57
++ + P +K++K+ G K P + P P E + + G+ KGS +
Sbjct: 1487 NNDREVPPDLTKRRKEENGTMGVSKHKSESPCESPYPNEKDKEKNKSKSSGKEKGSDSFK 1546
Query: 58 AAKTGKTTTTLGRKPRGRPKKLEKEEEKGIS 88
+ K K ++ ++ R +K+EK+E++ S
Sbjct: 1547 SEKMDKISSGGKKESRHDKEKIEKKEKRDSS 1577
>gi|239748099 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 36.2 bits (82), Expect = 0.006
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 12 LASKQKKDGTEKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKGAAKTGKTTTTLGRK 71
L +++++ G G G R +PP+ VP P RP G G++++ AA G TT RK
Sbjct: 186 LRAQERQSGRRAAGGGGARAEPPR----VP-PCRPAGCSGGNRSRRAAGAGPRTTR--RK 238
Query: 72 PRGRP 76
P RP
Sbjct: 239 PPPRP 243
>gi|239741995 PREDICTED: hypothetical protein XP_002342368 [Homo
sapiens]
Length = 224
Score = 36.2 bits (82), Expect = 0.006
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 12 LASKQKKDGTEKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKGAAKTGKTTTTLGRK 71
L +++++ G G G R +PP+ VP P RP G G++++ AA G TT RK
Sbjct: 115 LRAQERQSGRRAAGGGGARAEPPR----VP-PCRPAGCSGGNRSRRAAGAGPRTTR--RK 167
Query: 72 PRGRP 76
P RP
Sbjct: 168 PPPRP 172
>gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens]
Length = 484
Score = 36.2 bits (82), Expect = 0.006
Identities = 32/121 (26%), Positives = 59/121 (48%), Gaps = 21/121 (17%)
Query: 2 SESSSKSSQPLASKQKKDGTEKRGRGRPRK--QPPKELSEVPTPKRPRGRPKGSKNKGAA 59
S S+++ S+ AS++++ + G P+K P ++LS P+P+R + K K+K +
Sbjct: 329 SYSTARRSRS-ASRERRRRRSRSGTRSPKKPRSPKRKLSRSPSPRRHKKEKKKDKDKERS 387
Query: 60 KTGKTTTTLGRKP-----RGRPKKLEK------------EEEKGI-SQESSLEEQLPSGT 101
+ + +T +K + R +K E EEE+G S++ EE+ P T
Sbjct: 388 RDERERSTSKKKKSKDKEKDRERKSESDKDVKQVTRDYDEEEQGYDSEKEKKEEKKPIET 447
Query: 102 G 102
G
Sbjct: 448 G 448
Score = 33.5 bits (75), Expect = 0.037
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 6 SKSSQPLASKQKKDGTEKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKGAAKTGKTT 65
S+S+ K+K+D +KR + P+ S + +R R R + S + K
Sbjct: 304 SRSTSKTRDKKKEDKEKKRSKTPPKSYSTARRSRSASRERRRRRSR-SGTRSPKKPRSPK 362
Query: 66 TTLGRKPRGRPKKLEKEEEKGISQESSLEEQ 96
L R P R K EK+++K +E S +E+
Sbjct: 363 RKLSRSPSPRRHKKEKKKDK--DKERSRDER 391
>gi|239750213 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 35.8 bits (81), Expect = 0.007
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 17 KKDGTEKRGRGRP--RKQPPKELSEVPTPKRPRGRPKGSKNKGAAKTGKTTTTLGRKPRG 74
+K+ KRGR + +K+ K+ + K + +K K T K TTT K +
Sbjct: 18 EKESAWKRGRKKKTTKKKKKKKTTMKKKKKTTTKKKTTTKTKKRTTTTKKTTTTTTKEKE 77
Query: 75 RPKKLEKEEEKGISQESSLEEQ 96
+ K+ EKE+EK +E E++
Sbjct: 78 KEKEKEKEKEKEKEKEKEKEKK 99
Score = 32.3 bits (72), Expect = 0.082
Identities = 26/83 (31%), Positives = 40/83 (48%), Gaps = 9/83 (10%)
Query: 21 TEKRG---RGRPRKQPPKELSEVPTPKRPRGRPKGSKNKGAAKTGKTTTTLGRKP----R 73
TEK RGR +K K+ + T K+ + +K K KT K TTT + +
Sbjct: 17 TEKESAWKRGRKKKTTKKKKKKKTTMKKKKKTT--TKKKTTTKTKKRTTTTKKTTTTTTK 74
Query: 74 GRPKKLEKEEEKGISQESSLEEQ 96
+ K+ EKE+EK +E E++
Sbjct: 75 EKEKEKEKEKEKEKEKEKEKEKE 97
Score = 30.8 bits (68), Expect = 0.24
Identities = 23/92 (25%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 5 SSKSSQPLASKQKKDGTEKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKGAAKTGKT 64
+ K S ++KK +K+ + K+ K ++ T + + R +K KT T
Sbjct: 17 TEKESAWKRGRKKKTTKKKKKKKTTMKKKKKTTTKKKTTTKTKKRTTTTK-----KTTTT 71
Query: 65 TTTLGRKPRGRPKKLEKEEEKGISQESSLEEQ 96
TT K + + K+ EKE+EK +E +++
Sbjct: 72 TTKEKEKEKEKEKEKEKEKEKEKEKEKKKKKK 103
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 35.4 bits (80), Expect = 0.010
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 14 SKQKKDGTEKRGRGRPRKQPPKELSEVPT---PKRPRGR-PKGSKNKGAAKTGKTTTTLG 69
+K++ DG +K PR++ K + P K+PR R PK +K++G GK+ + G
Sbjct: 392 AKRRGDGRKKPRWQNPRRRAQKAPAAKPRGGGSKKPRRRGPKAAKSRG----GKSRSGGG 447
Query: 70 RKPRGRPKKL-EKEEEKG 86
+KPR R +K +K E G
Sbjct: 448 KKPRRRGQKARQKAAEAG 465
>gi|190014588 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo
sapiens]
Length = 530
Score = 35.0 bits (79), Expect = 0.013
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 12/94 (12%)
Query: 15 KQKKDGTEKRGRGRPRKQPPKELSEVPTPKRPRGRPK--------GSKNKGAAKTGKTTT 66
K KK G E++ +P+KQP K+ +PR P SK K AKTG T+T
Sbjct: 216 KSKKKGQEEK---QPKKQPKKDEEGQKEEDKPRKEPDKKEGKKEVESKRKNLAKTGVTST 272
Query: 67 TLGRKPRGRPKKLEKEEEKGISQESSLEEQLPSG 100
+ + G ++ EK+ + G + +++ + G
Sbjct: 273 S-DSEEEGDDQEGEKKRKGGRNFQTAHRRNMLKG 305
Score = 32.3 bits (72), Expect = 0.082
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 26 RGRPRKQPPKELSEVPTPKRPRGRPKGSKNKGAAKTGKTTTTLGRKPRG----RPKKLEK 81
RGRP +EV PK PRGRPK K +++ T K +G +PKK K
Sbjct: 180 RGRPAA------TEVKIPK-PRGRPKMVKQPCPSESDIITEEDKSKKKGQEEKQPKKQPK 232
Query: 82 EEEKGISQE 90
++E+G +E
Sbjct: 233 KDEEGQKEE 241
>gi|190014586 PC4 and SFRS1 interacting protein 1 isoform 1 [Homo
sapiens]
Length = 333
Score = 35.0 bits (79), Expect = 0.013
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 12/94 (12%)
Query: 15 KQKKDGTEKRGRGRPRKQPPKELSEVPTPKRPRGRPK--------GSKNKGAAKTGKTTT 66
K KK G E++ +P+KQP K+ +PR P SK K AKTG T+T
Sbjct: 216 KSKKKGQEEK---QPKKQPKKDEEGQKEEDKPRKEPDKKEGKKEVESKRKNLAKTGVTST 272
Query: 67 TLGRKPRGRPKKLEKEEEKGISQESSLEEQLPSG 100
+ + G ++ EK+ + G + +++ + G
Sbjct: 273 S-DSEEEGDDQEGEKKRKGGRNFQTAHRRNMLKG 305
Score = 32.3 bits (72), Expect = 0.082
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 26 RGRPRKQPPKELSEVPTPKRPRGRPKGSKNKGAAKTGKTTTTLGRKPRG----RPKKLEK 81
RGRP +EV PK PRGRPK K +++ T K +G +PKK K
Sbjct: 180 RGRPAA------TEVKIPK-PRGRPKMVKQPCPSESDIITEEDKSKKKGQEEKQPKKQPK 232
Query: 82 EEEKGISQE 90
++E+G +E
Sbjct: 233 KDEEGQKEE 241
>gi|19923653 PC4 and SFRS1 interacting protein 1 isoform 2 [Homo
sapiens]
Length = 530
Score = 35.0 bits (79), Expect = 0.013
Identities = 27/94 (28%), Positives = 45/94 (47%), Gaps = 12/94 (12%)
Query: 15 KQKKDGTEKRGRGRPRKQPPKELSEVPTPKRPRGRPK--------GSKNKGAAKTGKTTT 66
K KK G E++ +P+KQP K+ +PR P SK K AKTG T+T
Sbjct: 216 KSKKKGQEEK---QPKKQPKKDEEGQKEEDKPRKEPDKKEGKKEVESKRKNLAKTGVTST 272
Query: 67 TLGRKPRGRPKKLEKEEEKGISQESSLEEQLPSG 100
+ + G ++ EK+ + G + +++ + G
Sbjct: 273 S-DSEEEGDDQEGEKKRKGGRNFQTAHRRNMLKG 305
Score = 32.3 bits (72), Expect = 0.082
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 11/69 (15%)
Query: 26 RGRPRKQPPKELSEVPTPKRPRGRPKGSKNKGAAKTGKTTTTLGRKPRG----RPKKLEK 81
RGRP +EV PK PRGRPK K +++ T K +G +PKK K
Sbjct: 180 RGRPAA------TEVKIPK-PRGRPKMVKQPCPSESDIITEEDKSKKKGQEEKQPKKQPK 232
Query: 82 EEEKGISQE 90
++E+G +E
Sbjct: 233 KDEEGQKEE 241
>gi|4885375 histone cluster 1, H1c [Homo sapiens]
Length = 213
Score = 35.0 bits (79), Expect = 0.013
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 7/98 (7%)
Query: 2 SESSSKSSQPLASKQKKDGTEKRGRGRPRK-----QPPKELSEVPTPKRPRGR-PKGSKN 55
+ S K ++ AS + K +K G +P+K + PK+ + TPK+ + PK +K
Sbjct: 101 ASGSFKLNKKAASGEAKPKVKKAGGTKPKKPVGAAKKPKKAAGGATPKKSAKKTPKKAKK 160
Query: 56 KGAAKTGKTTTTLGRKPR-GRPKKLEKEEEKGISQESS 92
AA K +K + +PKK K K + +++
Sbjct: 161 PAAATVTKKVAKSPKKAKVAKPKKAAKSAAKAVKPKAA 198
>gi|54112403 chromodomain helicase DNA binding protein 7 [Homo
sapiens]
Length = 2997
Score = 34.7 bits (78), Expect = 0.017
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 1 MSESSSKSSQPLASKQKKDGTEKRGRGRPRKQPPKELSEVPTPKRPR--GRPKGSKNKGA 58
++ +S SQ K+K+ +K + + KE E TPK P+ PK K K A
Sbjct: 629 LNRNSLDGSQEEKKKKKRSKAKKDPKEPKEPKEKKEPKEPKTPKAPKIPKEPKEKKAKTA 688
Query: 59 AKTGKTT-TTLGRKPRGRPKKLEKEEEKGI---SQESSLEEQLP 98
K++ + +KP L+K+ KG S+ S L++ P
Sbjct: 689 TPKPKSSKKSSNKKPDSEASALKKKVNKGKTEGSENSDLDKTPP 732
>gi|38488727 arginine/serine-rich coiled-coil 1 [Homo sapiens]
Length = 334
Score = 34.7 bits (78), Expect = 0.017
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 10/92 (10%)
Query: 6 SKSSQPLASKQKKDGTEKRGRGRP-RKQPPKELSEVPTPKRPRGRPKGSKNKGAAKTGKT 64
S SS S++K+ + RGRG+ R Q + S +R R RP+ + +++
Sbjct: 70 SSSSSSYGSRRKRSRSRSRGRGKSYRVQRSRSKSRT---RRSRSRPRLRSHSRSSERSSH 126
Query: 65 TTTLGR-----KPRGRPK-KLEKEEEKGISQE 90
T R + +GR K K EKE++KG +E
Sbjct: 127 RRTRSRSRDRERRKGRDKEKREKEKDKGKDKE 158
>gi|116089325 splicing factor, arginine/serine-rich 12 isoform a
[Homo sapiens]
Length = 624
Score = 34.7 bits (78), Expect = 0.017
Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 14/108 (12%)
Query: 2 SESSSKSSQPLASKQKKDGTEKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKGAAKT 61
S SSSKS Q K + R R R Q + S+ P KR + R + +
Sbjct: 316 SRSSSKSHSRRKRSQSKHRSRSHNRSRSR-QKDRRRSKSPHKKRSKSRERRKSRSRSHSR 374
Query: 62 GKTTTTLGR-------------KPRGRPKKLEKEEEKGISQESSLEEQ 96
K T + K R R K+ EKE+E+G +++ E +
Sbjct: 375 DKRKDTREKIKEKERVKEKDREKEREREKEREKEKERGKNKDRDKERE 422
Score = 31.6 bits (70), Expect = 0.14
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 14/89 (15%)
Query: 3 ESSSKSSQPLASKQKKDGTEKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKGAAKTG 62
E S+ + K+KKD K+ R PR S + +R R R + S +++
Sbjct: 458 EREKDRSKEIDEKRKKD---KKSRTPPRSYNASRRSRSSSRERRRRRSRSS-----SRSP 509
Query: 63 KTTTTLGRK------PRGRPKKLEKEEEK 85
+T+ T+ RK PR R KK +K E++
Sbjct: 510 RTSKTIKRKSSRSPSPRSRNKKDKKREKE 538
Score = 26.6 bits (57), Expect = 4.5
Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 6 SKSSQPLASKQKKDGTEKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKGAAKTGKTT 65
SKS + S+ + +KR + ++ KE V R + R + + + + GK
Sbjct: 359 SKSRERRKSRSRSHSRDKR---KDTREKIKEKERVKEKDREKEREREKEREKEKERGKNK 415
Query: 66 TTLGRKPRGRPKKLEKEEEKGISQE 90
+ + R K EK+ E+ +E
Sbjct: 416 DRDKEREKDREKDKEKDREREREKE 440
>gi|21040255 splicing factor, arginine/serine-rich 12 isoform b
[Homo sapiens]
Length = 508
Score = 34.7 bits (78), Expect = 0.017
Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 14/108 (12%)
Query: 2 SESSSKSSQPLASKQKKDGTEKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKGAAKT 61
S SSSKS Q K + R R R Q + S+ P KR + R + +
Sbjct: 200 SRSSSKSHSRRKRSQSKHRSRSHNRSRSR-QKDRRRSKSPHKKRSKSRERRKSRSRSHSR 258
Query: 62 GKTTTTLGR-------------KPRGRPKKLEKEEEKGISQESSLEEQ 96
K T + K R R K+ EKE+E+G +++ E +
Sbjct: 259 DKRKDTREKIKEKERVKEKDREKEREREKEREKEKERGKNKDRDKERE 306
Score = 31.6 bits (70), Expect = 0.14
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 14/89 (15%)
Query: 3 ESSSKSSQPLASKQKKDGTEKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKGAAKTG 62
E S+ + K+KKD K+ R PR S + +R R R + S +++
Sbjct: 342 EREKDRSKEIDEKRKKD---KKSRTPPRSYNASRRSRSSSRERRRRRSRSS-----SRSP 393
Query: 63 KTTTTLGRK------PRGRPKKLEKEEEK 85
+T+ T+ RK PR R KK +K E++
Sbjct: 394 RTSKTIKRKSSRSPSPRSRNKKDKKREKE 422
Score = 26.6 bits (57), Expect = 4.5
Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
Query: 6 SKSSQPLASKQKKDGTEKRGRGRPRKQPPKELSEVPTPKRPRGRPKGSKNKGAAKTGKTT 65
SKS + S+ + +KR + ++ KE V R + R + + + + GK
Sbjct: 243 SKSRERRKSRSRSHSRDKR---KDTREKIKEKERVKEKDREKEREREKEREKEKERGKNK 299
Query: 66 TTLGRKPRGRPKKLEKEEEKGISQE 90
+ + R K EK+ E+ +E
Sbjct: 300 DRDKEREKDREKDKEKDREREREKE 324
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.298 0.121 0.324
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,154,978
Number of Sequences: 37866
Number of extensions: 305307
Number of successful extensions: 2186
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 218
Number of HSP's successfully gapped in prelim test: 251
Number of HSP's that attempted gapping in prelim test: 1488
Number of HSP's gapped (non-prelim): 847
length of query: 104
length of database: 18,247,518
effective HSP length: 75
effective length of query: 29
effective length of database: 15,407,568
effective search space: 446819472
effective search space used: 446819472
T: 11
A: 40
X1: 17 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 44 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.