Guide to the Human Genome
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Search of human proteins with 239753110

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239753110 PREDICTED: doublecortin domain-containing protein
ENSP00000382097-like [Homo sapiens]
         (530 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239753110 PREDICTED: doublecortin domain-containing protein E...  1102   0.0  
gi|239747673 PREDICTED: doublecortin domain-containing protein E...   794   0.0  
gi|239741542 PREDICTED: doublecortin domain-containing protein E...   670   0.0  
gi|117938307 doublecortin domain containing 2 [Homo sapiens]          186   6e-47
gi|150456471 doublecortin domain containing 2B [Homo sapiens]         154   2e-37
gi|156713430 doublecortin-like kinase 2 isoform b [Homo sapiens]       74   3e-13
gi|156713428 doublecortin-like kinase 2 isoform a [Homo sapiens]       74   3e-13
gi|4758128 doublecortin-like kinase 1 [Homo sapiens]                   72   1e-12
gi|30181244 doublecortin isoform c [Homo sapiens]                      71   2e-12
gi|30181242 doublecortin isoform b [Homo sapiens]                      71   2e-12
gi|30181240 doublecortin isoform c [Homo sapiens]                      71   2e-12
gi|30181246 doublecortin isoform a [Homo sapiens]                      71   2e-12
gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]              65   2e-10
gi|5454016 retinitis pigmentosa RP1 protein [Homo sapiens]             62   2e-09
gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]     39   0.009
gi|93102424 hypothetical protein LOC23116 [Homo sapiens]               33   0.65 
gi|21264332 sialyltransferase 7A [Homo sapiens]                        33   0.84 
gi|78042577 MAP7 domain containing 1 [Homo sapiens]                    33   0.84 
gi|20149646 hypothetical protein LOC54964 [Homo sapiens]               32   1.1  
gi|239755534 PREDICTED: doublecortin domain containing 5 [Homo s...    32   1.4  
gi|239750000 PREDICTED: doublecortin domain containing 5 [Homo s...    32   1.4  
gi|239744311 PREDICTED: doublecortin domain containing 5 [Homo s...    32   1.4  
gi|193083122 translocase of outer mitochondrial membrane 40 [Hom...    32   1.4  
gi|193083120 translocase of outer mitochondrial membrane 40 [Hom...    32   1.4  
gi|5174723 translocase of outer mitochondrial membrane 40 [Homo ...    32   1.4  
gi|219802034 nuclear factor related to kappaB binding protein is...    32   1.9  
gi|23346420 nuclear factor related to kappaB binding protein iso...    32   1.9  
gi|7706657 cell division cycle 40 homolog [Homo sapiens]               31   2.5  
gi|239747320 PREDICTED: forkhead box protein O6 [Homo sapiens]         31   3.2  
gi|153792060 SERTA domain containing 1 [Homo sapiens]                  31   3.2  

>gi|239753110 PREDICTED: doublecortin domain-containing protein
           ENSP00000382097-like [Homo sapiens]
          Length = 530

 Score = 1102 bits (2851), Expect = 0.0
 Identities = 530/530 (100%), Positives = 530/530 (100%)

Query: 1   MLAASSSSFPELCRHAPHLPGLPVAPSPVSALGWSGPPVGGARAWARLCRRRCPRCRSLS 60
           MLAASSSSFPELCRHAPHLPGLPVAPSPVSALGWSGPPVGGARAWARLCRRRCPRCRSLS
Sbjct: 1   MLAASSSSFPELCRHAPHLPGLPVAPSPVSALGWSGPPVGGARAWARLCRRRCPRCRSLS 60

Query: 61  APASEERGAAMGTRGPSAPVDTTPAKTIVVYRNGDPFYVGKKFVLSRRRAATFEALLEQL 120
           APASEERGAAMGTRGPSAPVDTTPAKTIVVYRNGDPFYVGKKFVLSRRRAATFEALLEQL
Sbjct: 61  APASEERGAAMGTRGPSAPVDTTPAKTIVVYRNGDPFYVGKKFVLSRRRAATFEALLEQL 120

Query: 121 TEQVDVPFGVRRLFTPTRGHRVLGLDALQAGGKYVAAGRERFKELDYIHIVPRKPAKIRK 180
           TEQVDVPFGVRRLFTPTRGHRVLGLDALQAGGKYVAAGRERFKELDYIHIVPRKPAKIRK
Sbjct: 121 TEQVDVPFGVRRLFTPTRGHRVLGLDALQAGGKYVAAGRERFKELDYIHIVPRKPAKIRK 180

Query: 181 LKEIKPVVHCDINVPSKWQTYHRISRHINVFTNGRLFIPPAKIIIPKFSLSDWDIVLATI 240
           LKEIKPVVHCDINVPSKWQTYHRISRHINVFTNGRLFIPPAKIIIPKFSLSDWDIVLATI
Sbjct: 181 LKEIKPVVHCDINVPSKWQTYHRISRHINVFTNGRLFIPPAKIIIPKFSLSDWDIVLATI 240

Query: 241 GEKVFPLGGVRKLFTMNGHLLGDSKDLQDNHFYVAVGLETFKYFPYWKSPRVPSEVQHVS 300
           GEKVFPLGGVRKLFTMNGHLLGDSKDLQDNHFYVAVGLETFKYFPYWKSPRVPSEVQHVS
Sbjct: 241 GEKVFPLGGVRKLFTMNGHLLGDSKDLQDNHFYVAVGLETFKYFPYWKSPRVPSEVQHVS 300

Query: 301 GVKSYLFHSLTEHSPRRQAPSPFYRTSERPETTQLTWRARDPVLVDSKGKEPCKYDGIPP 360
           GVKSYLFHSLTEHSPRRQAPSPFYRTSERPETTQLTWRARDPVLVDSKGKEPCKYDGIPP
Sbjct: 301 GVKSYLFHSLTEHSPRRQAPSPFYRTSERPETTQLTWRARDPVLVDSKGKEPCKYDGIPP 360

Query: 361 KTQDSVYYAKEEKKKTLAEPLVQRGAEGDVYKAPTPSKETQGALDVKEEHNVQLEVPVDQ 420
           KTQDSVYYAKEEKKKTLAEPLVQRGAEGDVYKAPTPSKETQGALDVKEEHNVQLEVPVDQ
Sbjct: 361 KTQDSVYYAKEEKKKTLAEPLVQRGAEGDVYKAPTPSKETQGALDVKEEHNVQLEVPVDQ 420

Query: 421 SWTGWVAASEWAKPGELARAWLAAWPHSAPGPCCLLGRLLALRQGDWHTHGHREGAYIRV 480
           SWTGWVAASEWAKPGELARAWLAAWPHSAPGPCCLLGRLLALRQGDWHTHGHREGAYIRV
Sbjct: 421 SWTGWVAASEWAKPGELARAWLAAWPHSAPGPCCLLGRLLALRQGDWHTHGHREGAYIRV 480

Query: 481 VRTFQAISEGRTEGLACGNCNGSKRDRISGWKLWGVAGCQREGDSLVVVA 530
           VRTFQAISEGRTEGLACGNCNGSKRDRISGWKLWGVAGCQREGDSLVVVA
Sbjct: 481 VRTFQAISEGRTEGLACGNCNGSKRDRISGWKLWGVAGCQREGDSLVVVA 530


>gi|239747673 PREDICTED: doublecortin domain-containing protein
           ENSP00000382097-like [Homo sapiens]
          Length = 714

 Score =  794 bits (2050), Expect = 0.0
 Identities = 393/461 (85%), Positives = 396/461 (85%), Gaps = 53/461 (11%)

Query: 16  APHLPGLPVAPSPVSALGWSGPPVGGARAWARLCRRRCPRCRSLSAPASEERGAAMGTRG 75
           +P  P     PSP  A GWSGPPVGGARAWARLCRRRCPRCRSLSAPASEERGAAMGTRG
Sbjct: 122 SPSSPRPVPVPSPSCASGWSGPPVGGARAWARLCRRRCPRCRSLSAPASEERGAAMGTRG 181

Query: 76  PSAPVDTTPAKTIVVYRNGDPFYVGKKFVLSRRRAATFEALLEQLTEQVDVPFGVRRLFT 135
           PSAPVDTTPAKTIVVYRNGDPFYVGKKFVLSRRRAATFEALLEQLTEQVDVPFGVRRLFT
Sbjct: 182 PSAPVDTTPAKTIVVYRNGDPFYVGKKFVLSRRRAATFEALLEQLTEQVDVPFGVRRLFT 241

Query: 136 PTRGHRVLGLDALQAGGKYVAAGRERFKELDYIHIVPRKPAKIRKLKEIKPVVHCDINVP 195
           PTRGHRVLGLDALQAGGKYVAAGRERFKELDYIHIVPRKPAKIRKLKEIKPVVHCDINVP
Sbjct: 242 PTRGHRVLGLDALQAGGKYVAAGRERFKELDYIHIVPRKPAKIRKLKEIKPVVHCDINVP 301

Query: 196 SKWQTYHRISRHINVFTNGRLFIPPAKIIIPKFSLSDWDIVLATIGEKVFPLGGVRKLFT 255
           SKWQTYHRISRHINVFTNGRLFIPPAKIIIPKFSLSDWDIVLATIGEKVFPLGGVRKLFT
Sbjct: 302 SKWQTYHRISRHINVFTNGRLFIPPAKIIIPKFSLSDWDIVLATIGEKVFPLGGVRKLFT 361

Query: 256 MNGHLLGDSKDLQDNHFYVAVGLETFKYFPYWKSPRVPSEVQHVSGVKSYLFHSLTEHSP 315
           MNGHLLGDSKDLQDNHFYVAVGLETFKYFPYWKSPRV S+                    
Sbjct: 362 MNGHLLGDSKDLQDNHFYVAVGLETFKYFPYWKSPRVDSK-------------------- 401

Query: 316 RRQAPSPFYRTSERPETTQLTWRARDPVLVDSKGKEPCKYDGIPPKTQDSVYYAKEEKKK 375
                                            GKEPCKYDGIPPKTQDSVYYAKEEKKK
Sbjct: 402 ---------------------------------GKEPCKYDGIPPKTQDSVYYAKEEKKK 428

Query: 376 TLAEPLVQRGAEGDVYKAPTPSKETQGALDVKEEHNVQLEVPVDQSWTGWVAASEWAKPG 435
           TLAEPLVQRGAEGDVYKAPTPSKETQGALDVKEEHNVQLEVPVDQSWTGWVAASEWAKPG
Sbjct: 429 TLAEPLVQRGAEGDVYKAPTPSKETQGALDVKEEHNVQLEVPVDQSWTGWVAASEWAKPG 488

Query: 436 ELARAWLAAWPHSAPGPCCLLGRLLALRQGDWHTHGHREGA 476
           ELARAWLAAWPHSAPGPCCLLGRLLALRQGDWHTHGHRE +
Sbjct: 489 ELARAWLAAWPHSAPGPCCLLGRLLALRQGDWHTHGHREAS 529


>gi|239741542 PREDICTED: doublecortin domain-containing protein
           ENSP00000382097-like [Homo sapiens]
          Length = 510

 Score =  670 bits (1729), Expect = 0.0
 Identities = 339/406 (83%), Positives = 342/406 (84%), Gaps = 53/406 (13%)

Query: 16  APHLPGLPVAPSPVSALGWSGPPVGGARAWARLCRRRCPRCRSLSAPASEERGAAMGTRG 75
           +P  P     PSP  A GWSGPPVGGARAWARLCRRRCPRCRSLSAPASEERGAAMGTRG
Sbjct: 122 SPSSPRPVPVPSPSCASGWSGPPVGGARAWARLCRRRCPRCRSLSAPASEERGAAMGTRG 181

Query: 76  PSAPVDTTPAKTIVVYRNGDPFYVGKKFVLSRRRAATFEALLEQLTEQVDVPFGVRRLFT 135
           PSAPVDTTPAKTIVVYRNGDPFYVGKKFVLSRRRAATFEALLEQLTEQVDVPFGVRRLFT
Sbjct: 182 PSAPVDTTPAKTIVVYRNGDPFYVGKKFVLSRRRAATFEALLEQLTEQVDVPFGVRRLFT 241

Query: 136 PTRGHRVLGLDALQAGGKYVAAGRERFKELDYIHIVPRKPAKIRKLKEIKPVVHCDINVP 195
           PTRGHRVLGLDALQAGGKYVAAGRERFKELDYIHIVPRKPAKIRKLKEIKPVVHCDINVP
Sbjct: 242 PTRGHRVLGLDALQAGGKYVAAGRERFKELDYIHIVPRKPAKIRKLKEIKPVVHCDINVP 301

Query: 196 SKWQTYHRISRHINVFTNGRLFIPPAKIIIPKFSLSDWDIVLATIGEKVFPLGGVRKLFT 255
           SKWQTYHRISRHINVFTNGRLFIPPAKIIIPKFSLSDWDIVLATIGEKVFPLGGVRKLFT
Sbjct: 302 SKWQTYHRISRHINVFTNGRLFIPPAKIIIPKFSLSDWDIVLATIGEKVFPLGGVRKLFT 361

Query: 256 MNGHLLGDSKDLQDNHFYVAVGLETFKYFPYWKSPRVPSEVQHVSGVKSYLFHSLTEHSP 315
           MNGHLLGDSKDLQDNHFYVAVGLETFKYFPYWKSPRV S+                    
Sbjct: 362 MNGHLLGDSKDLQDNHFYVAVGLETFKYFPYWKSPRVDSK-------------------- 401

Query: 316 RRQAPSPFYRTSERPETTQLTWRARDPVLVDSKGKEPCKYDGIPPKTQDSVYYAKEEKKK 375
                                            GKEPCKYDGIPPKTQDSVYYAKEEKKK
Sbjct: 402 ---------------------------------GKEPCKYDGIPPKTQDSVYYAKEEKKK 428

Query: 376 TLAEPLVQRGAEGDVYKAPTPSKETQGALDVKEEHNVQLEVPVDQS 421
           TLAEPLVQRGAEGDVYKAPTPSKETQGALDVKEEHNVQLEVPVDQ+
Sbjct: 429 TLAEPLVQRGAEGDVYKAPTPSKETQGALDVKEEHNVQLEVPVDQA 474


>gi|117938307 doublecortin domain containing 2 [Homo sapiens]
          Length = 476

 Score =  186 bits (471), Expect = 6e-47
 Identities = 116/357 (32%), Positives = 192/357 (53%), Gaps = 26/357 (7%)

Query: 72  GTRGPSAPVDTTPAKTIVVYRNGDPFYVGKKFVLSRRRAATFEALLEQLTEQVDVPFG-V 130
           G+   S+ +     K+++VYRNGDPFY G++ V+  ++ ++FE  L+++T  V  PFG V
Sbjct: 3   GSSARSSHLSQPVVKSVLVYRNGDPFYAGRRVVIHEKKVSSFEVFLKEVTGGVQAPFGAV 62

Query: 131 RRLFTPTRGHRVLGLDALQAGGKYVAAGRERFKELDYIHI--VPRKPAKIRKLKEIKPVV 188
           R ++TP  GHR+  LD +Q+GG YVA G+E FK+L+Y+ I  + ++P ++    E+KPV+
Sbjct: 63  RNIYTPRTGHRIRKLDQIQSGGNYVAGGQEAFKKLNYLDIGEIKKRPMEVVN-TEVKPVI 121

Query: 189 HCDINVPSKWQTYHRISRHINVFTNGRLFIPPAKIIIPKFSLSDWDIVLATIGEKV-FPL 247
           H  INV ++++   +    I +  NG L  P ++++IP+ +L+ WD VL  + EK+    
Sbjct: 122 HSRINVSARFRKPLQEPCTIFLIANGDLINPASRLLIPRKTLNQWDHVLQMVTEKITLRS 181

Query: 248 GGVRKLFTMNGHLLGDSKDLQDNHFYVAVGLETFKYFPYWKSPRVPSEVQHVSGVKSYLF 307
           G V +L+T+ G L+    +L++  FYVAVG + FK  PY                   LF
Sbjct: 182 GAVHRLYTLEGKLVESGAELENGQFYVAVGRDKFKKLPY----------------SELLF 225

Query: 308 HSLTEHSPRRQAPS--PFYRTSERPETTQLTWRARDPV-LVDSKGKEPCKYDGIPPK-TQ 363
              T   P  Q  S  P    S + + +     ++  V   D+   +P K  G       
Sbjct: 226 DKSTMRRPFGQKASSLPPIVGSRKSKGSGNDRHSKSTVGSSDNSSPQPLKRKGKKEDVNS 285

Query: 364 DSVYYAKEEKKKTLAEPLVQRGAEGDVYKAPTPSKETQGALDVKEEHNVQLEVPVDQ 420
           + +   K+  K   ++  +    EG ++KA     ET+GA +V+E+ + Q+EVPVDQ
Sbjct: 286 EKLTKLKQNVKLKNSQETIPNSDEG-IFKAGAERSETRGAAEVQEDEDTQVEVPVDQ 341


>gi|150456471 doublecortin domain containing 2B [Homo sapiens]
          Length = 349

 Score =  154 bits (389), Expect = 2e-37
 Identities = 126/350 (36%), Positives = 166/350 (47%), Gaps = 53/350 (15%)

Query: 85  AKTIVVYRNGDPFYVGKKFVLSRRRAATFEALLEQLTEQVDVPFGVRRLFTPTRGHRVLG 144
           AK +VVYRNGDPF+ G + V+++RR  T EA L ++T  V  P  VR L+TP  GH V  
Sbjct: 8   AKRVVVYRNGDPFFPGSQLVVTQRRFPTMEAFLCEVTSAVQAPLAVRALYTPCHGHPVTN 67

Query: 145 LDALQAGGKYVAAGRERFKELDYIHIVPRKPAKIRKLKEIKPVVH--CDINVPSKWQTYH 202
           L  L+  G+YVAAG ERF +L Y+    + P       +  PV    CD  +    Q   
Sbjct: 68  LADLKNRGQYVAAGFERFHKLHYLPHRGKDPGGKSCRLQGPPVTRHLCDGAIGR--QLPA 125

Query: 203 RISRHINVFTNGRLFIPPAKIIIPKFSLSDWDIVLATIGEKV-FPLGGVRKLFTMNGHLL 261
               +I+VF NG L  PP  + + + +  DW+ VL  + EKV    G V KL T+ G  L
Sbjct: 126 GAPSYIHVFRNGDLVSPPFSLKLSQAASQDWETVLKLLTEKVKLQSGAVCKLCTLEGLPL 185

Query: 262 GDSKDLQDNHFYVAVGLETFKYFPYWK----SPRVPSEVQHVSGVKSYLFHSLTEHSPRR 317
              K+L   H+YVAVG + FK  PY +    SP +P       G KS          P R
Sbjct: 186 SAGKELVTGHYYVAVGEDEFKDLPYLELLVPSPSLPRGCWQPPGSKS---------RPHR 236

Query: 318 QAPSPFYRTSERPETTQLTWRARDPVLVDSKGKEPCKYDGIPPKTQDSVYYAKEE----- 372
           Q          R + TQ               KEP   D I P    S +YA+ +     
Sbjct: 237 QGAQ-----GHRAQVTQ------------PSPKEP---DRIKP----SAFYARPQQTIQP 272

Query: 373 --KKKTLAEPLVQRGAEGDVYKAPTPSKETQGALDVKEEHNVQLEVPVDQ 420
             K  TL+ P    G  G VY AP   KET GAL+V ++ + Q E P+DQ
Sbjct: 273 RSKLPTLSFP---SGVIG-VYGAPHRRKETAGALEVADDEDTQTEEPLDQ 318


>gi|156713430 doublecortin-like kinase 2 isoform b [Homo sapiens]
          Length = 765

 Score = 74.3 bits (181), Expect = 3e-13
 Identities = 64/232 (27%), Positives = 105/232 (45%), Gaps = 7/232 (3%)

Query: 59  LSAPASEERGAAMGTRGPSAPVDTTPAKTIVVYRNGDPFYVGKKFVLSRRRAATFEALLE 118
           + +PA     +   TR   A      AK    YRNGD ++ G  F +S  R  +F+ALL 
Sbjct: 45  IPSPAHSAHCSFYRTRTLQALSSEKKAKKARFYRNGDRYFKGLVFAISSDRFRSFDALLI 104

Query: 119 QLT----EQVDVPFGVRRLFTPTRGHRVLGLDALQAGGKYVAAGRERFKELDYI-HIVPR 173
           +LT    + V++P GVR ++T     +V  LD L  G  YV A  E F+++DY  +I P 
Sbjct: 105 ELTRSLSDNVNLPQGVRTIYTIDGSRKVTSLDELLEGESYVCASNEPFRKVDYTKNINPN 164

Query: 174 KPAKIRKLKEIKPVVHCDINVPSKWQTYHRISRHINVFTNGRLFIPPAKIIIPKFSLSDW 233
               I+            +    K        + + V  +G       +I++ K +   +
Sbjct: 165 WSVNIKGGTSRALAAASSVKSEVKESKDFIKPKLVTVIRSGVKPRKAVRILLNKKTAHSF 224

Query: 234 DIVLATIGEKV-FPLGGVRKLFTMNGHLLGDSKD-LQDNHFYVAVGLETFKY 283
           + VL  I E +    G V++L T++G  +   +D   D+  ++A G E F+Y
Sbjct: 225 EQVLTDITEAIKLDSGVVKRLCTLDGKQVTCLQDFFGDDDVFIACGPEKFRY 276


>gi|156713428 doublecortin-like kinase 2 isoform a [Homo sapiens]
          Length = 766

 Score = 74.3 bits (181), Expect = 3e-13
 Identities = 64/232 (27%), Positives = 105/232 (45%), Gaps = 7/232 (3%)

Query: 59  LSAPASEERGAAMGTRGPSAPVDTTPAKTIVVYRNGDPFYVGKKFVLSRRRAATFEALLE 118
           + +PA     +   TR   A      AK    YRNGD ++ G  F +S  R  +F+ALL 
Sbjct: 45  IPSPAHSAHCSFYRTRTLQALSSEKKAKKARFYRNGDRYFKGLVFAISSDRFRSFDALLI 104

Query: 119 QLT----EQVDVPFGVRRLFTPTRGHRVLGLDALQAGGKYVAAGRERFKELDYI-HIVPR 173
           +LT    + V++P GVR ++T     +V  LD L  G  YV A  E F+++DY  +I P 
Sbjct: 105 ELTRSLSDNVNLPQGVRTIYTIDGSRKVTSLDELLEGESYVCASNEPFRKVDYTKNINPN 164

Query: 174 KPAKIRKLKEIKPVVHCDINVPSKWQTYHRISRHINVFTNGRLFIPPAKIIIPKFSLSDW 233
               I+            +    K        + + V  +G       +I++ K +   +
Sbjct: 165 WSVNIKGGTSRALAAASSVKSEVKESKDFIKPKLVTVIRSGVKPRKAVRILLNKKTAHSF 224

Query: 234 DIVLATIGEKV-FPLGGVRKLFTMNGHLLGDSKD-LQDNHFYVAVGLETFKY 283
           + VL  I E +    G V++L T++G  +   +D   D+  ++A G E F+Y
Sbjct: 225 EQVLTDITEAIKLDSGVVKRLCTLDGKQVTCLQDFFGDDDVFIACGPEKFRY 276


>gi|4758128 doublecortin-like kinase 1 [Homo sapiens]
          Length = 729

 Score = 72.4 bits (176), Expect = 1e-12
 Identities = 76/314 (24%), Positives = 132/314 (42%), Gaps = 18/314 (5%)

Query: 52  RCPRCRSLSAPASEERGAAMGTRGPSAPVDTTPAKTIVVYRNGDPFYVGKKFVLSRRRAA 111
           R  R   L +P      +   TR          AK +  YRNGD ++ G  + +S  R  
Sbjct: 23  RGSRVNGLPSPTHSAHCSFYRTRTLQTLSSEKKAKKVRFYRNGDRYFKGIVYAISPDRFR 82

Query: 112 TFEALLEQLT----EQVDVPFGVRRLFTPTRGHRVLGLDALQAGGKYVAAGRERFKELDY 167
           +FEALL  LT    + V++P GVR ++T     ++  LD L  G  YV    E FK+L+Y
Sbjct: 83  SFEALLADLTRTLSDNVNLPQGVRTIYTIDGLKKISSLDQLVEGESYVCGSIEPFKKLEY 142

Query: 168 I-HIVPRKPAKIRKLKEIKPV--VHCDINVPSKWQTYHRISRH--INVFTNGRLFIPPAK 222
             ++ P     ++     + V  +      PS+ +      R   + +  +G       +
Sbjct: 143 TKNVNPNWSVNVKTTSASRAVSSLATAKGSPSEVRENKDFIRPKLVTIIRSGVKPRKAVR 202

Query: 223 IIIPKFSLSDWDIVLATIGEKV-FPLGGVRKLFTMNGHLLGDSKD-LQDNHFYVAVGLET 280
           I++ K +   ++ VL  I + +    G V++L+T++G  +   +D   D+  ++A G E 
Sbjct: 203 ILLNKKTAHSFEQVLTDITDAIKLDSGVVKRLYTLDGKQVMCLQDFFGDDDIFIACGPEK 262

Query: 281 FKYFPYWKSPRVPSEVQHVSGVKSYLFHSLTEHSPR--RQAPSPFYRTSERPETTQLTWR 338
           F+Y   +        V     VKS  +  +   S R   ++P P  R+     T+ +   
Sbjct: 263 FRYQDDFLLDESECRV-----VKSTSYTKIASSSRRSTTKSPGPSRRSKSPASTSSVNGT 317

Query: 339 ARDPVLVDSKGKEP 352
               +     GK P
Sbjct: 318 PGSQLSTPRSGKSP 331


>gi|30181244 doublecortin isoform c [Homo sapiens]
          Length = 360

 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 59/241 (24%), Positives = 111/241 (46%), Gaps = 9/241 (3%)

Query: 52  RCPRCRSLSAPASEERGAAMGTRGPSAPVDTTPAKTIVVYRNGDPFYVGKKFVLSRRRAA 111
           R  R   L +P      +   TR   A  +   AK +  YRNGD ++ G  + +S  R  
Sbjct: 19  RGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRNGDRYFKGIVYAVSSDRFR 78

Query: 112 TFEALLEQLT----EQVDVPFGVRRLFTPTRGHRVLGLDALQAGGKYVAAGRERFKELDY 167
           +F+ALL  LT    + +++P GVR ++T     ++  +D L+ G  YV +    FK+++Y
Sbjct: 79  SFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELEEGESYVCSSDNFFKKVEY 138

Query: 168 I-HIVPRKPAKIRKLKEIK-PVVHCDINVPSKWQTYHRI-SRHINVFTNGRLFIPPAKII 224
             ++ P     ++    +K P      N     +    +  + + +  +G       +++
Sbjct: 139 TKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPKLVTIIRSGVKPRKAVRVL 198

Query: 225 IPKFSLSDWDIVLATIGEKV-FPLGGVRKLFTMNGHLLGDSKD-LQDNHFYVAVGLETFK 282
           + K +   ++ VL  I E +    G V+KL+T++G  +    D   D+  ++A G E F+
Sbjct: 199 LNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLHDFFGDDDVFIACGPEKFR 258

Query: 283 Y 283
           Y
Sbjct: 259 Y 259


>gi|30181242 doublecortin isoform b [Homo sapiens]
          Length = 365

 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 59/241 (24%), Positives = 111/241 (46%), Gaps = 9/241 (3%)

Query: 52  RCPRCRSLSAPASEERGAAMGTRGPSAPVDTTPAKTIVVYRNGDPFYVGKKFVLSRRRAA 111
           R  R   L +P      +   TR   A  +   AK +  YRNGD ++ G  + +S  R  
Sbjct: 19  RGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRNGDRYFKGIVYAVSSDRFR 78

Query: 112 TFEALLEQLT----EQVDVPFGVRRLFTPTRGHRVLGLDALQAGGKYVAAGRERFKELDY 167
           +F+ALL  LT    + +++P GVR ++T     ++  +D L+ G  YV +    FK+++Y
Sbjct: 79  SFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELEEGESYVCSSDNFFKKVEY 138

Query: 168 I-HIVPRKPAKIRKLKEIK-PVVHCDINVPSKWQTYHRI-SRHINVFTNGRLFIPPAKII 224
             ++ P     ++    +K P      N     +    +  + + +  +G       +++
Sbjct: 139 TKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPKLVTIIRSGVKPRKAVRVL 198

Query: 225 IPKFSLSDWDIVLATIGEKV-FPLGGVRKLFTMNGHLLGDSKD-LQDNHFYVAVGLETFK 282
           + K +   ++ VL  I E +    G V+KL+T++G  +    D   D+  ++A G E F+
Sbjct: 199 LNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLHDFFGDDDVFIACGPEKFR 258

Query: 283 Y 283
           Y
Sbjct: 259 Y 259


>gi|30181240 doublecortin isoform c [Homo sapiens]
          Length = 360

 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 59/241 (24%), Positives = 111/241 (46%), Gaps = 9/241 (3%)

Query: 52  RCPRCRSLSAPASEERGAAMGTRGPSAPVDTTPAKTIVVYRNGDPFYVGKKFVLSRRRAA 111
           R  R   L +P      +   TR   A  +   AK +  YRNGD ++ G  + +S  R  
Sbjct: 19  RGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRNGDRYFKGIVYAVSSDRFR 78

Query: 112 TFEALLEQLT----EQVDVPFGVRRLFTPTRGHRVLGLDALQAGGKYVAAGRERFKELDY 167
           +F+ALL  LT    + +++P GVR ++T     ++  +D L+ G  YV +    FK+++Y
Sbjct: 79  SFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELEEGESYVCSSDNFFKKVEY 138

Query: 168 I-HIVPRKPAKIRKLKEIK-PVVHCDINVPSKWQTYHRI-SRHINVFTNGRLFIPPAKII 224
             ++ P     ++    +K P      N     +    +  + + +  +G       +++
Sbjct: 139 TKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPKLVTIIRSGVKPRKAVRVL 198

Query: 225 IPKFSLSDWDIVLATIGEKV-FPLGGVRKLFTMNGHLLGDSKD-LQDNHFYVAVGLETFK 282
           + K +   ++ VL  I E +    G V+KL+T++G  +    D   D+  ++A G E F+
Sbjct: 199 LNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLHDFFGDDDVFIACGPEKFR 258

Query: 283 Y 283
           Y
Sbjct: 259 Y 259


>gi|30181246 doublecortin isoform a [Homo sapiens]
          Length = 441

 Score = 71.2 bits (173), Expect = 2e-12
 Identities = 59/241 (24%), Positives = 111/241 (46%), Gaps = 9/241 (3%)

Query: 52  RCPRCRSLSAPASEERGAAMGTRGPSAPVDTTPAKTIVVYRNGDPFYVGKKFVLSRRRAA 111
           R  R   L +P      +   TR   A  +   AK +  YRNGD ++ G  + +S  R  
Sbjct: 100 RGSRMNGLPSPTHSAHCSFYRTRTLQALSNEKKAKKVRFYRNGDRYFKGIVYAVSSDRFR 159

Query: 112 TFEALLEQLT----EQVDVPFGVRRLFTPTRGHRVLGLDALQAGGKYVAAGRERFKELDY 167
           +F+ALL  LT    + +++P GVR ++T     ++  +D L+ G  YV +    FK+++Y
Sbjct: 160 SFDALLADLTRSLSDNINLPQGVRYIYTIDGSRKIGSMDELEEGESYVCSSDNFFKKVEY 219

Query: 168 I-HIVPRKPAKIRKLKEIK-PVVHCDINVPSKWQTYHRI-SRHINVFTNGRLFIPPAKII 224
             ++ P     ++    +K P      N     +    +  + + +  +G       +++
Sbjct: 220 TKNVNPNWSVNVKTSANMKAPQSLASSNSAQARENKDFVRPKLVTIIRSGVKPRKAVRVL 279

Query: 225 IPKFSLSDWDIVLATIGEKV-FPLGGVRKLFTMNGHLLGDSKD-LQDNHFYVAVGLETFK 282
           + K +   ++ VL  I E +    G V+KL+T++G  +    D   D+  ++A G E F+
Sbjct: 280 LNKKTAHSFEQVLTDITEAIKLETGVVKKLYTLDGKQVTCLHDFFGDDDVFIACGPEKFR 339

Query: 283 Y 283
           Y
Sbjct: 340 Y 340


>gi|117414137 retinitis pigmentosa 1-like 1 [Homo sapiens]
          Length = 2400

 Score = 64.7 bits (156), Expect = 2e-10
 Identities = 35/104 (33%), Positives = 57/104 (54%), Gaps = 1/104 (0%)

Query: 57  RSLSAPASEERGAAMGTRGPSAPVDTTPAKTIVVYRNGDPFYVGKKFVLSRRRAATFEAL 116
           R+  AP+  E       R PS     TPAK I   + GDP + G +  + +R   TF AL
Sbjct: 6   RNAQAPSHRECFLPSVARTPSV-TKVTPAKKITFLKRGDPRFAGVRLAVHQRAFKTFSAL 64

Query: 117 LEQLTEQVDVPFGVRRLFTPTRGHRVLGLDALQAGGKYVAAGRE 160
           +++L+++V + FGVR + TP   H +  L+ L+ GG Y+ + ++
Sbjct: 65  MDELSQRVPLSFGVRSVTTPRGLHSLSALEQLEDGGCYLCSDKK 108


>gi|5454016 retinitis pigmentosa RP1 protein [Homo sapiens]
          Length = 2156

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 6/132 (4%)

Query: 85  AKTIVVYRNGDPFYVGKKFVLSRRRAATFEALLEQLTEQVDVPFGVRRLFTPTRGHRVLG 144
           AK I  Y++GDP + G + V++ R   +F+ALL+ L+ +V +PFGVR + TP   H +  
Sbjct: 35  AKRISFYKSGDPQFGGVRVVVNPRSFKSFDALLDNLSRKVPLPFGVRNISTPRGRHSITR 94

Query: 145 LDALQAGGKYVAAGRERFK--ELDYIHIVPRKPAKIRKLKEIKPVVHCDINVPSKWQTYH 202
           L+ L+ G  Y+ +   + +  +LD     PR     R +    P     +  P       
Sbjct: 95  LEELEDGESYLCSHGRKVQPVDLDKARRRPRPWLSSRAISAHSPPHPVAVAAPG----MP 150

Query: 203 RISRHINVFTNG 214
           R  R + VF NG
Sbjct: 151 RPPRSLVVFRNG 162



 Score = 56.6 bits (135), Expect = 5e-08
 Identities = 40/92 (43%), Positives = 55/92 (59%), Gaps = 5/92 (5%)

Query: 77  SAPVDTTPAKTIVVYRNGDPFYVGKKFVLSRRRAATFEALLEQLTEQVDVPFGVRRLFTP 136
           +AP    P +++VV+RNGDP    +  +LSRR   +FEA L+ LTE +  P  V +L+  
Sbjct: 145 AAPGMPRPPRSLVVFRNGDP-KTRRAVLLSRRVTQSFEAFLQHLTEVMQRP--VVKLYA- 200

Query: 137 TRGHRVLGLDA-LQAGGKYVAAGRERFKELDY 167
           T G RV  L A + + G  VAAGRE FK  +Y
Sbjct: 201 TDGRRVPSLQAVILSSGAVVAAGREPFKPGNY 232


>gi|32483416 neurofilament, heavy polypeptide 200kDa [Homo sapiens]
          Length = 1020

 Score = 39.3 bits (90), Expect = 0.009
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 2/95 (2%)

Query: 346 DSKGKEPCKYDGIPPKTQDSVYYAKEEKKKTLAEPLVQRGAEGDVYKAPTPSKETQGALD 405
           DSK +E  K +   PK ++    A E+ K++  E   ++    D  K PTP KE    ++
Sbjct: 858 DSKKEEAPKKEAPKPKVEEKKEPAVEKPKESKVE--AKKEEAEDKKKVPTPEKEAPAKVE 915

Query: 406 VKEEHNVQLEVPVDQSWTGWVAASEWAKPGELARA 440
           VKE+   + +  V +       A E +KP E   A
Sbjct: 916 VKEDAKPKEKTEVAKKEPDDAKAKEPSKPAEKKEA 950


>gi|93102424 hypothetical protein LOC23116 [Homo sapiens]
          Length = 1720

 Score = 33.1 bits (74), Expect = 0.65
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 5/76 (6%)

Query: 81   DTTPAKTIVVYRNGDPFYVGKKFVLSRRRAATFEALLEQLTEQVDVPF---GVRRLFTPT 137
            + TPA+ +V   NG   Y G+K +        FE +LE+     D+P+    VR L    
Sbjct: 1369 NVTPARAVVSLINGGQRYYGRKMLFFMMCHPNFEKMLEKYVPSKDLPYIKDSVRNL--QQ 1426

Query: 138  RGHRVLGLDALQAGGK 153
            +G   + LD   A G+
Sbjct: 1427 KGLGEIPLDTPSAKGR 1442


>gi|21264332 sialyltransferase 7A [Homo sapiens]
          Length = 600

 Score = 32.7 bits (73), Expect = 0.84
 Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 18/124 (14%)

Query: 288 KSPRV-PSEVQHVSGVKSYLFHSLTEHSPRRQAPSPFYRTS----ERPETTQLTWRARDP 342
           K P+  PS  Q    +K     SL +  P+ QAP+   RT+      PE   L  + +  
Sbjct: 36  KEPQTKPSRHQRTENIKERSLQSLAK--PKSQAPTRARRTTIYAEPVPENNALNTQTQPK 93

Query: 343 V-LVDSKGKEPCKYDGIPPKTQDSVYYAKE-------EKKKTLAEPLVQRGAEGDVYKAP 394
                 +GKE    +  PP+ QD V +  +       EK+KT+   L  RG +  +    
Sbjct: 94  AHTTGDRGKEA---NQAPPEEQDKVPHTAQRAAWKSPEKEKTMVNTLSPRGQDAGMASGR 150

Query: 395 TPSK 398
           T ++
Sbjct: 151 TEAQ 154


>gi|78042577 MAP7 domain containing 1 [Homo sapiens]
          Length = 841

 Score = 32.7 bits (73), Expect = 0.84
 Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 24/148 (16%)

Query: 315 PRRQA-PSPF-YRTSERPETTQLTWRARDP-VLVDSKGKEPCKYDGIPPKTQDSVYYAKE 371
           PRR + PSP     S+ P T Q   +A +   L   + +E  KY       + +V+  KE
Sbjct: 109 PRRSSQPSPTAVPASDSPPTKQEVKKAGERHKLAKERREERAKYLA----AKKAVWLEKE 164

Query: 372 EKKKTLAEPLVQ--------RGAEGDVYKAPTPSKETQGALDVKEEHNVQLEVPVDQSWT 423
           EK K L E  +Q        +  + +  +A    ++ Q     KE +   ++  V ++W 
Sbjct: 165 EKAKALREKQLQERRRRLEEQRLKAEQRRAALEERQRQKLEKNKERYEAAIQRSVKKTWA 224

Query: 424 GWVAASEWAKPGELARAWLAAWPHSAPG 451
             +    W+        W  A  HS+PG
Sbjct: 225 E-IRQQRWS--------WAGALHHSSPG 243


>gi|20149646 hypothetical protein LOC54964 [Homo sapiens]
          Length = 341

 Score = 32.3 bits (72), Expect = 1.1
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 429 SEWAKPGELARAWLAAWPHSAPGPCCLLGRLLALRQGDWHTH 470
           S+W+ PG     W +  P + P P  L  RL+ +  G WH H
Sbjct: 173 SQWSTPGSTPSRWPSPSPTAMPSPEDL--RLVLMPWGPWHCH 212


>gi|239755534 PREDICTED: doublecortin domain containing 5 [Homo
           sapiens]
          Length = 1020

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%)

Query: 85  AKTIVVYRNGDPFYVGKKFVLSRRRAATFEALLEQLTEQVDVPFGVRRLFT 135
           A  I+ Y+NGD +  GK  V     A TF  LL + TEQ+ +     +++T
Sbjct: 645 AVKIIAYKNGDGYRNGKLIV-----AGTFPMLLTECTEQLGLARAASKVYT 690


>gi|239750000 PREDICTED: doublecortin domain containing 5 [Homo
           sapiens]
          Length = 1020

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%)

Query: 85  AKTIVVYRNGDPFYVGKKFVLSRRRAATFEALLEQLTEQVDVPFGVRRLFT 135
           A  I+ Y+NGD +  GK  V     A TF  LL + TEQ+ +     +++T
Sbjct: 645 AVKIIAYKNGDGYRNGKLIV-----AGTFPMLLTECTEQLGLARAASKVYT 690


>gi|239744311 PREDICTED: doublecortin domain containing 5 [Homo
           sapiens]
          Length = 1020

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%)

Query: 85  AKTIVVYRNGDPFYVGKKFVLSRRRAATFEALLEQLTEQVDVPFGVRRLFT 135
           A  I+ Y+NGD +  GK  V     A TF  LL + TEQ+ +     +++T
Sbjct: 645 AVKIIAYKNGDGYRNGKLIV-----AGTFPMLLTECTEQLGLARAASKVYT 690


>gi|193083122 translocase of outer mitochondrial membrane 40 [Homo
          sapiens]
          Length = 361

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 5/72 (6%)

Query: 1  MLAASSSSFPELCRHAPHLPGLPVAPSPVSALGWSGPPVGGARAWARLCRR---RCPRCR 57
          +LAASS         AP L GLP  P P S  G++ PP+GG+        R   R P   
Sbjct: 4  VLAASSPPAGPPPPPAPALVGLP--PPPPSPPGFTLPPLGGSLGAGTSTSRSSERTPGAA 61

Query: 58 SLSAPASEERGA 69
          + SA  + E GA
Sbjct: 62 TASASGAAEDGA 73


>gi|193083120 translocase of outer mitochondrial membrane 40 [Homo
          sapiens]
          Length = 361

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 5/72 (6%)

Query: 1  MLAASSSSFPELCRHAPHLPGLPVAPSPVSALGWSGPPVGGARAWARLCRR---RCPRCR 57
          +LAASS         AP L GLP  P P S  G++ PP+GG+        R   R P   
Sbjct: 4  VLAASSPPAGPPPPPAPALVGLP--PPPPSPPGFTLPPLGGSLGAGTSTSRSSERTPGAA 61

Query: 58 SLSAPASEERGA 69
          + SA  + E GA
Sbjct: 62 TASASGAAEDGA 73


>gi|5174723 translocase of outer mitochondrial membrane 40 [Homo
          sapiens]
          Length = 361

 Score = 32.0 bits (71), Expect = 1.4
 Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 5/72 (6%)

Query: 1  MLAASSSSFPELCRHAPHLPGLPVAPSPVSALGWSGPPVGGARAWARLCRR---RCPRCR 57
          +LAASS         AP L GLP  P P S  G++ PP+GG+        R   R P   
Sbjct: 4  VLAASSPPAGPPPPPAPALVGLP--PPPPSPPGFTLPPLGGSLGAGTSTSRSSERTPGAA 61

Query: 58 SLSAPASEERGA 69
          + SA  + E GA
Sbjct: 62 TASASGAAEDGA 73


>gi|219802034 nuclear factor related to kappaB binding protein
           isoform 1 [Homo sapiens]
          Length = 1299

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 5/55 (9%)

Query: 17  PHLPGLPVAPSPVSALGWSGP-----PVGGARAWARLCRRRCPRCRSLSAPASEE 66
           P LP +P++P PVSA+  SGP     P   +     +     P   ++ +PAS +
Sbjct: 728 PALPAIPISPPPVSAVNKSGPSTVSEPAKSSSGVLLVSSPTMPHLGTMLSPASSQ 782


>gi|23346420 nuclear factor related to kappaB binding protein
           isoform 2 [Homo sapiens]
          Length = 1324

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 5/55 (9%)

Query: 17  PHLPGLPVAPSPVSALGWSGP-----PVGGARAWARLCRRRCPRCRSLSAPASEE 66
           P LP +P++P PVSA+  SGP     P   +     +     P   ++ +PAS +
Sbjct: 753 PALPAIPISPPPVSAVNKSGPSTVSEPAKSSSGVLLVSSPTMPHLGTMLSPASSQ 807


>gi|7706657 cell division cycle 40 homolog [Homo sapiens]
          Length = 579

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 12/104 (11%)

Query: 160 ERFKELDYIHIVPRKPAKIRKLK--EIKPVVHCDINVPSKWQTYHRISRHINVFTNGRLF 217
           E  KELD I    +K  K  + K  E K ++H       + ++Y  I + + V  N R  
Sbjct: 211 EEQKELDEITAKRQKKGKQEEEKPGEEKTILHVKEMYDYQGRSYLHIPQDVGV--NLRST 268

Query: 218 IPPAKIIIPKFSLSDWDIVLATIGEKVFPLGGVRKLFTMNGHLL 261
           +PP K  +PK  +  W      +           +LF ++GHLL
Sbjct: 269 MPPEKCYLPKKQIHVWSGHTKGV--------SAVRLFPLSGHLL 304


>gi|239747320 PREDICTED: forkhead box protein O6 [Homo sapiens]
          Length = 589

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 26/95 (27%), Positives = 36/95 (37%), Gaps = 9/95 (9%)

Query: 416 VPVDQSWTGWVAASEWAKPGELARAWLAAWPHSAPGPCCLLGRLLALRQGDWHTHGH--- 472
           VP+  S  GW  A+  +      + WL  +P S   P       L +  G WH  GH   
Sbjct: 231 VPLGASLQGWGTAAGPSPELGSGQGWLPFYPFSTADPS---AEDLHMASGPWHHPGHIFC 287

Query: 473 REGAYIRVVRTFQAISEGRTEGLACGNCNGSKRDR 507
           +E A+           +GR  GL      G +R R
Sbjct: 288 QEEAW---TENLNFTPDGRANGLPRALNQGLQRTR 319


>gi|153792060 SERTA domain containing 1 [Homo sapiens]
          Length = 236

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 16/40 (40%), Positives = 21/40 (52%)

Query: 3   AASSSSFPELCRHAPHLPGLPVAPSPVSALGWSGPPVGGA 42
           AA S+S   L     H+ GL  AP P++  G  G  +GGA
Sbjct: 109 AALSASMASLLEDLSHIEGLSQAPQPLADEGPPGRSIGGA 148


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.136    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,082,999
Number of Sequences: 37866
Number of extensions: 1242252
Number of successful extensions: 4003
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 3924
Number of HSP's gapped (non-prelim): 67
length of query: 530
length of database: 18,247,518
effective HSP length: 107
effective length of query: 423
effective length of database: 14,195,856
effective search space: 6004847088
effective search space used: 6004847088
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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