Guide to the Human Genome
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Name: DCDC5 Sequence: fasta or formatted (1020aa) NCBI GI: 239750000
Description:

PREDICTED: doublecortin domain containing 5

Not currently referenced in the text

Other entries for this name:
alt mRNA {1020aa} PREDICTED: doublecortin domain containing 5
alt mRNA {1020aa} PREDICTED: doublecortin domain containing 5
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         67           2
 C cysteine            2.4         24           1
 D aspartate           4.2         43           2
 E glutamate           7.2         73           2
 F phenylalanine       2.5         25           2
 G glycine             5.2         53           2
 H histidine           2.9         30           1
 I isoleucine          5.4         55           2
 K lysine              8.9         91           2
 L leucine             9.5         97           2
 M methionine          2.3         23           1
 N asparagine          3.4         35           2
 P proline             5.8         59           2
 Q glutamine           5.3         54           2
 R arginine            5.4         55           2
 S serine              7.1         72           2
 T threonine           5.8         59           2
 V valine              6.5         66           3
 W tryptophan          1.6         16           1
 Y tyrosine            2.3         23           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: doublecortin domain containing 5 
DCDC5                 1.000   PREDICTED: doublecortin domain containing 5 
DCDC5                 1.000   PREDICTED: doublecortin domain containing 5 
DCDC1                 0.009   doublecortin domain containing 1 
SMAD1                 0.005   Sma- and Mad-related protein 1 
SMAD1                 0.005   Sma- and Mad-related protein 1 
CRAT                  0.004   carnitine acetyltransferase precursor 
TAOK3                 0.003   TAO kinase 3 
LOC728597             0.003   PREDICTED: doublecortin domain-containing protein E...
LOC728597             0.003   PREDICTED: doublecortin domain-containing protein E...
LOC728597             0.003   PREDICTED: doublecortin domain-containing protein E...
HDAC4                 0.003   histone deacetylase 4 
YY1AP1                0.003   YY1-associated protein isoform 2 
YY1AP1                0.003   YY1-associated protein isoform 3 
SMAD5                 0.003   SMAD, mothers against DPP homolog 5 
SMAD5                 0.003   SMAD, mothers against DPP homolog 5 
SMAD5                 0.003   SMAD, mothers against DPP homolog 5 
DCLK1                 0.003   doublecortin-like kinase 1 
IFT172                0.002   selective LIM binding factor homolog 
POU4F2                0.002   Brn3b POU domain transcription factor 
MRGPRE                0.002   MAS-related GPR, member E 
SATB2                 0.002   SATB homeobox 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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