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Search of human proteins with 239753102
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753102 PREDICTED: hypothetical protein [Homo sapiens]
(252 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753102 PREDICTED: hypothetical protein [Homo sapiens] 535 e-152
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ... 52 6e-07
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 49 3e-06
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 49 3e-06
gi|45439359 triple functional domain (PTPRF interacting) [Homo s... 49 5e-06
gi|169163728 PREDICTED: hypothetical protein [Homo sapiens] 47 1e-05
gi|169163708 PREDICTED: hypothetical protein [Homo sapiens] 47 1e-05
gi|239746776 PREDICTED: hypothetical protein XP_002343846 [Homo ... 47 2e-05
gi|169163019 PREDICTED: hypothetical protein [Homo sapiens] 47 2e-05
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens] 47 2e-05
gi|239752263 PREDICTED: hypothetical protein XP_002348185 [Homo ... 46 4e-05
gi|157743252 pecanex-like 3 [Homo sapiens] 46 4e-05
gi|110556644 zinc finger protein, multitype 1 [Homo sapiens] 45 8e-05
gi|55741655 anoctamin 8 [Homo sapiens] 44 1e-04
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 44 1e-04
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 44 1e-04
gi|239752265 PREDICTED: hypothetical protein XP_002348186 [Homo ... 44 1e-04
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 44 1e-04
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 43 3e-04
gi|33356148 formin-like 1 [Homo sapiens] 43 3e-04
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 42 4e-04
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 42 4e-04
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 42 4e-04
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 42 5e-04
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 42 5e-04
gi|156416026 zinc finger protein 219 [Homo sapiens] 42 5e-04
gi|156415998 zinc finger protein 219 [Homo sapiens] 42 5e-04
gi|30039694 zinc finger protein 598 [Homo sapiens] 42 5e-04
gi|156415996 zinc finger protein 219 [Homo sapiens] 42 5e-04
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 42 7e-04
>gi|239753102 PREDICTED: hypothetical protein [Homo sapiens]
Length = 252
Score = 535 bits (1379), Expect = e-152
Identities = 252/252 (100%), Positives = 252/252 (100%)
Query: 1 MGGQGRSRGGGWGTIAGLAGQGPAHEAGGGERALLPGLGRRGPRRIVAAVGGGGRGAPLL 60
MGGQGRSRGGGWGTIAGLAGQGPAHEAGGGERALLPGLGRRGPRRIVAAVGGGGRGAPLL
Sbjct: 1 MGGQGRSRGGGWGTIAGLAGQGPAHEAGGGERALLPGLGRRGPRRIVAAVGGGGRGAPLL 60
Query: 61 PCGAGGRALDRLDDPSPPPHLPGQSRPRPQTFPRGVFPALGDAAQGPEDGLARRKDTEAP 120
PCGAGGRALDRLDDPSPPPHLPGQSRPRPQTFPRGVFPALGDAAQGPEDGLARRKDTEAP
Sbjct: 61 PCGAGGRALDRLDDPSPPPHLPGQSRPRPQTFPRGVFPALGDAAQGPEDGLARRKDTEAP 120
Query: 121 TFPNPAPLLLPPSLPAPKARGSYPSSGPRSLPNPAGTRRSAVPSWGARGWGGSEETRWGG 180
TFPNPAPLLLPPSLPAPKARGSYPSSGPRSLPNPAGTRRSAVPSWGARGWGGSEETRWGG
Sbjct: 121 TFPNPAPLLLPPSLPAPKARGSYPSSGPRSLPNPAGTRRSAVPSWGARGWGGSEETRWGG 180
Query: 181 DPRSQTPGETAFPAVHSGLCQKEPHRCSIGFGRLKSSCFNVNEILRPRHERPSRRPRCPF 240
DPRSQTPGETAFPAVHSGLCQKEPHRCSIGFGRLKSSCFNVNEILRPRHERPSRRPRCPF
Sbjct: 181 DPRSQTPGETAFPAVHSGLCQKEPHRCSIGFGRLKSSCFNVNEILRPRHERPSRRPRCPF 240
Query: 241 YSLSTARKSSEI 252
YSLSTARKSSEI
Sbjct: 241 YSLSTARKSSEI 252
>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
subunit [Homo sapiens]
Length = 551
Score = 51.6 bits (122), Expect = 6e-07
Identities = 52/163 (31%), Positives = 57/163 (34%), Gaps = 37/163 (22%)
Query: 18 LAGQGPAHEAGGGERALLPGLGRRGPRRIVAAVGGGGRGAPLLPCGAGGRALDRLDDPSP 77
++G+G A GG RA P G RG R AV GG R P G GG P
Sbjct: 180 MSGEGKAGPPGGSSRAAFP-QGGRGRGRFPGAVPGGDRFPG--PAGPGG---------PP 227
Query: 78 PPHLPGQSRPRPQTFPRGV-----FPALGDAAQGPEDGLARRKDTEAPTF---------- 122
PP GQ+ PRP P G P G P G R D P
Sbjct: 228 PPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQPFGQP 287
Query: 123 ---------PNPAPLLLPPSLPAPKARGSYPSSGPRSLPNPAG 156
P P P PP P P +G P GP P P G
Sbjct: 288 PLGPLPPGPPPPVPGYGPPPGPPPPQQGPPPPPGPFP-PRPPG 329
Score = 30.0 bits (66), Expect = 2.0
Identities = 28/80 (35%), Positives = 30/80 (37%), Gaps = 9/80 (11%)
Query: 75 PSPPPHLPGQSRPRPQTFPRGVFPALGDAAQGPEDGLARRKDTEAPT--FPNPAPLLLPP 132
P PPP Q P P P G FP GP LA P P PAP + P
Sbjct: 307 PGPPPP---QQGPPP---PPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAPHVNPA 360
Query: 133 SLPAPKARGSYPSSGPRSLP 152
P P G P+S R P
Sbjct: 361 FFPPPTNSG-MPTSDSRGPP 379
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 49.3 bits (116), Expect = 3e-06
Identities = 63/202 (31%), Positives = 80/202 (39%), Gaps = 36/202 (17%)
Query: 2 GGQGRSRGGGWGTIAGLAGQGPAHEAGGGERALLPGLGRRGPRRIVAAVG----GGGRGA 57
GG G GGG+G G G G GGG L GL + G ++ + GG
Sbjct: 70 GGGGFGGGGGFG---GGGGGGGGGSFGGGGPPGLGGLFQAGMPKLRSTANRDNDSGGSRP 126
Query: 58 PLLPCGAGGRALDRLDDPSPPPHLPGQSRPRPQTFPRGVFPALGDAAQGPEDGLAR---- 113
PLLP GGR+ P PP PG+ FP P+ G + PE R
Sbjct: 127 PLLP--PGGRSTSA--KPFSPPSGPGR-------FP---VPSPGHRSGPPEPQRNRMPPP 172
Query: 114 RKD--TEAPTFPNPAPLLLPPSLPAPKARGSYPSSGPRSLPNPAGTRRSAVPSWGARGWG 171
R D ++ + P P P P +P RGS P G P+P T P G RG
Sbjct: 173 RPDVGSKPDSIPPPVPSTPRPIQSSPHNRGSPPVPGGPRQPSPGPT---PPPFPGNRG-- 227
Query: 172 GSEETRWGGDPRSQTPGETAFP 193
T GG Q+P ++ P
Sbjct: 228 ----TALGGGSIRQSPLSSSSP 245
Score = 31.2 bits (69), Expect = 0.90
Identities = 45/160 (28%), Positives = 51/160 (31%), Gaps = 60/160 (37%)
Query: 4 QGRSRGGGWGTIAGLAGQGPAHEAGGGERALLPGLGRRGPRRIVAAVGGGGRGAPLLPCG 63
+G GGG G G G G GGG GGGG G+ G
Sbjct: 63 KGAGAGGGGGGFGGGGGFG-----GGG--------------------GGGGGGS----FG 93
Query: 64 AGGRALDRLDDPSPPPHLPGQSRPRPQTFPRGVFPALGDAAQGPEDGLARRKDTEAPTFP 123
GG PP L G F G+ P L A D R
Sbjct: 94 GGG-----------PPGLGG-------LFQAGM-PKLRSTANRDNDSGGSR--------- 125
Query: 124 NPAPLLLPPSLPAPKARGSYPSSGPRSLPNPAGTRRSAVP 163
P LLPP + A+ P SGP P P+ RS P
Sbjct: 126 ---PPLLPPGGRSTSAKPFSPPSGPGRFPVPSPGHRSGPP 162
Score = 30.0 bits (66), Expect = 2.0
Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 2/86 (2%)
Query: 75 PSPPPHLPGQSRPRPQTFPRGVFPALGDAAQGPEDGLARRKDTEAPTFPNPAPLLLPPSL 134
P PPP P + P P P G L +G R P P+ + + P S
Sbjct: 356 PLPPP--PSERPPPPVRDPPGRSGPLPPPPPVSRNGSTSRALPATPQLPSRSGVDSPRSG 413
Query: 135 PAPKARGSYPSSGPRSLPNPAGTRRS 160
P P PS+G P P+ + R+
Sbjct: 414 PRPPLPPDRPSAGAPPPPPPSTSIRN 439
Score = 28.1 bits (61), Expect = 7.6
Identities = 32/110 (29%), Positives = 38/110 (34%), Gaps = 14/110 (12%)
Query: 53 GGRGAPLLPCGAGGRALDRLDDPSP----PPHLPGQSR-----PRPQTFPRGVFPALGDA 103
G RG L G G L SP PP P SR P P P G P++
Sbjct: 224 GNRGTAL---GGGSIRQSPLSSSSPFSNRPPLPPTPSRALDDKPPPPPPPVGNRPSIHRE 280
Query: 104 AQGPEDGLARRKDTEAPTFPNPAPLLLPPSLPAPKARGSYPSSGPRSLPN 153
A P + P+ P P+ P P P +R P P S N
Sbjct: 281 AVPPPP--PQNNKPPVPSTPRPSASSQAPPPPPPPSRPGPPPLPPSSSGN 328
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 49.3 bits (116), Expect = 3e-06
Identities = 63/202 (31%), Positives = 80/202 (39%), Gaps = 36/202 (17%)
Query: 2 GGQGRSRGGGWGTIAGLAGQGPAHEAGGGERALLPGLGRRGPRRIVAAVG----GGGRGA 57
GG G GGG+G G G G GGG L GL + G ++ + GG
Sbjct: 70 GGGGFGGGGGFG---GGGGGGGGGSFGGGGPPGLGGLFQAGMPKLRSTANRDNDSGGSRP 126
Query: 58 PLLPCGAGGRALDRLDDPSPPPHLPGQSRPRPQTFPRGVFPALGDAAQGPEDGLAR---- 113
PLLP GGR+ P PP PG+ FP P+ G + PE R
Sbjct: 127 PLLP--PGGRSTSA--KPFSPPSGPGR-------FP---VPSPGHRSGPPEPQRNRMPPP 172
Query: 114 RKD--TEAPTFPNPAPLLLPPSLPAPKARGSYPSSGPRSLPNPAGTRRSAVPSWGARGWG 171
R D ++ + P P P P +P RGS P G P+P T P G RG
Sbjct: 173 RPDVGSKPDSIPPPVPSTPRPIQSSPHNRGSPPVPGGPRQPSPGPT---PPPFPGNRG-- 227
Query: 172 GSEETRWGGDPRSQTPGETAFP 193
T GG Q+P ++ P
Sbjct: 228 ----TALGGGSIRQSPLSSSSP 245
Score = 31.2 bits (69), Expect = 0.90
Identities = 45/160 (28%), Positives = 51/160 (31%), Gaps = 60/160 (37%)
Query: 4 QGRSRGGGWGTIAGLAGQGPAHEAGGGERALLPGLGRRGPRRIVAAVGGGGRGAPLLPCG 63
+G GGG G G G G GGG GGGG G+ G
Sbjct: 63 KGAGAGGGGGGFGGGGGFG-----GGG--------------------GGGGGGS----FG 93
Query: 64 AGGRALDRLDDPSPPPHLPGQSRPRPQTFPRGVFPALGDAAQGPEDGLARRKDTEAPTFP 123
GG PP L G F G+ P L A D R
Sbjct: 94 GGG-----------PPGLGG-------LFQAGM-PKLRSTANRDNDSGGSR--------- 125
Query: 124 NPAPLLLPPSLPAPKARGSYPSSGPRSLPNPAGTRRSAVP 163
P LLPP + A+ P SGP P P+ RS P
Sbjct: 126 ---PPLLPPGGRSTSAKPFSPPSGPGRFPVPSPGHRSGPP 162
Score = 30.0 bits (66), Expect = 2.0
Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 2/86 (2%)
Query: 75 PSPPPHLPGQSRPRPQTFPRGVFPALGDAAQGPEDGLARRKDTEAPTFPNPAPLLLPPSL 134
P PPP P + P P P G L +G R P P+ + + P S
Sbjct: 356 PLPPP--PSERPPPPVRDPPGRSGPLPPPPPVSRNGSTSRALPATPQLPSRSGVDSPRSG 413
Query: 135 PAPKARGSYPSSGPRSLPNPAGTRRS 160
P P PS+G P P+ + R+
Sbjct: 414 PRPPLPPDRPSAGAPPPPPPSTSIRN 439
Score = 28.1 bits (61), Expect = 7.6
Identities = 32/110 (29%), Positives = 38/110 (34%), Gaps = 14/110 (12%)
Query: 53 GGRGAPLLPCGAGGRALDRLDDPSP----PPHLPGQSR-----PRPQTFPRGVFPALGDA 103
G RG L G G L SP PP P SR P P P G P++
Sbjct: 224 GNRGTAL---GGGSIRQSPLSSSSPFSNRPPLPPTPSRALDDKPPPPPPPVGNRPSIHRE 280
Query: 104 AQGPEDGLARRKDTEAPTFPNPAPLLLPPSLPAPKARGSYPSSGPRSLPN 153
A P + P+ P P+ P P P +R P P S N
Sbjct: 281 AVPPPP--PQNNKPPVPSTPRPSASSQAPPPPPPPSRPGPPPLPPSSSGN 328
>gi|45439359 triple functional domain (PTPRF interacting) [Homo
sapiens]
Length = 3097
Score = 48.5 bits (114), Expect = 5e-06
Identities = 64/234 (27%), Positives = 79/234 (33%), Gaps = 35/234 (14%)
Query: 2 GGQGRSRGGGWGTIAGLAGQGPAHEAGGGERALLPGLGRRGPRRIVAAVGGGGRGAPLLP 61
GG G S GGG G G H G P R P RI V P+L
Sbjct: 2297 GGSGGSGGGGGSGGGGAPSGGSGHSGGPSSCGGAPSTSRSRPSRIPQPV---RHHPPVLV 2353
Query: 62 CGAGGRALDRLDDPSPPPHLPGQSRPRPQTFPRGVFPALGDAA--QGPEDGLARRKDTEA 119
A + + G S P P P G P G +A + P A + EA
Sbjct: 2354 SSAA-------SSQAEADKMSGTSTPGPSLPPPGAAPEAGPSAPSRRPPGADAEGSEREA 2406
Query: 120 PTFPNPAPLLLP-----------PSLPAPKAR---GSYPSSGPRS-LPNPAGT-RRSAVP 163
P L P P PA AR G+ P PR+ +P + SAVP
Sbjct: 2407 EPIPKMKVLESPRKGAANASGSSPDAPAKDARASLGTLPLGKPRAGAASPLNSPLSSAVP 2466
Query: 164 SWGARGWGGSEETRWGGD-----PRS--QTPGETAFPAVHSGLCQKEPHRCSIG 210
S G + S + GG P S PG FP L ++ P + G
Sbjct: 2467 SLGKEPFPPSSPLQKGGSFWSSIPASPASRPGSFTFPGDSDSLQRQTPRHAAPG 2520
>gi|169163728 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 47.4 bits (111), Expect = 1e-05
Identities = 62/203 (30%), Positives = 70/203 (34%), Gaps = 40/203 (19%)
Query: 9 GGGWGTIAGLAGQGPAHEAGGGERALLPGLGRRGPRRIVAAVGGGGRGAPLLPCGAGGRA 68
GG WGT +GPA + G R P VG R L G RA
Sbjct: 12 GGQWGTPLYPRARGPAIASAGYSRPPSP-------------VGRARRRGTWLRVLRGPRA 58
Query: 69 LDRLDDPSPPPHLPGQSRPRPQTFPRGVFPALGDAAQGPEDGLA-------------RRK 115
PSP P LP ++RP + R V PA AA+GP A R
Sbjct: 59 ------PSPAPALPARARPPRENRKRAV-PA--RAARGPPKRPAGGQTGGVEAASGEERS 109
Query: 116 DTEAPTFPNPAPLLLPPSLPAPKARGSYPSSGPRSLPNPAGTRRSAVPSWGARGWGGSEE 175
P P PAP PAP R S + P L G R G GW
Sbjct: 110 QPRRPRRPPPAP---RRPRPAPGRRKSLYEAAP-LLTREKGGRSGRRGDRGGSGWSHGHT 165
Query: 176 TRWGGDPRSQTPGETAFPAVHSG 198
R GG S + G T FP G
Sbjct: 166 ARVGGTGDS-SAGLTTFPGSSRG 187
>gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 47.4 bits (111), Expect = 1e-05
Identities = 62/203 (30%), Positives = 70/203 (34%), Gaps = 40/203 (19%)
Query: 9 GGGWGTIAGLAGQGPAHEAGGGERALLPGLGRRGPRRIVAAVGGGGRGAPLLPCGAGGRA 68
GG WGT +GPA + G R P VG R L G RA
Sbjct: 12 GGQWGTPLYPRARGPAIASAGYSRPPSP-------------VGRARRRGTWLRVLRGPRA 58
Query: 69 LDRLDDPSPPPHLPGQSRPRPQTFPRGVFPALGDAAQGPEDGLA-------------RRK 115
PSP P LP ++RP + R V PA AA+GP A R
Sbjct: 59 ------PSPAPALPARARPPRENRKRAV-PA--RAARGPPKRPAGGQTGGVEAASGEERS 109
Query: 116 DTEAPTFPNPAPLLLPPSLPAPKARGSYPSSGPRSLPNPAGTRRSAVPSWGARGWGGSEE 175
P P PAP PAP R S + P L G R G GW
Sbjct: 110 QPRRPRRPPPAP---RRPRPAPGRRKSLYEAAP-LLTREKGGRSGRRGDRGGSGWSHGHT 165
Query: 176 TRWGGDPRSQTPGETAFPAVHSG 198
R GG S + G T FP G
Sbjct: 166 ARVGGTGDS-SAGLTTFPGSSRG 187
>gi|239746776 PREDICTED: hypothetical protein XP_002343846 [Homo
sapiens]
Length = 210
Score = 46.6 bits (109), Expect = 2e-05
Identities = 49/147 (33%), Positives = 62/147 (42%), Gaps = 28/147 (19%)
Query: 73 DDPSPPPHLPGQSRPRPQTFPRGVFPALG--DAAQGPEDGLARRKDTEAPTFPNPAPLLL 130
D PPP P P P++ P V P G D+ P R D+ P +P ++L
Sbjct: 71 DSVVPPPGSPDSVVPPPRS-PDSVVPPPGSPDSVVLPP----RSPDSVVPPPGSPDSVVL 125
Query: 131 PPSLP---APKARGSYPSSG-----PRSLPNPAGTRRSAVPSWGARGWGGSEETRWGGDP 182
PP P P AR P SG PRSL PA R GA GW G RWG P
Sbjct: 126 PPRSPDSVVPPARS--PDSGGRAGSPRSLAPPAAARAE-----GAPGWAG----RWGRVP 174
Query: 183 RSQTPGETAFPAVHSGLCQKEPHRCSI 209
+++P + P+ L Q R S+
Sbjct: 175 LARSPPQV--PSRPPSLSQPLSSRVSL 199
>gi|169163019 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 46.6 bits (109), Expect = 2e-05
Identities = 62/203 (30%), Positives = 70/203 (34%), Gaps = 40/203 (19%)
Query: 9 GGGWGTIAGLAGQGPAHEAGGGERALLPGLGRRGPRRIVAAVGGGGRGAPLLPCGAGGRA 68
GG WGT +GPA + G R P VG R L G RA
Sbjct: 12 GGQWGTPLYPRARGPAIASAGYSRPPSP-------------VGRARRRGTWLRVLRGPRA 58
Query: 69 LDRLDDPSPPPHLPGQSRPRPQTFPRGVFPALGDAAQGPEDGLA-------------RRK 115
PSP P LP ++RP + R V PA AA+GP A R
Sbjct: 59 ------PSPAPALPARARPPRENRKRAV-PA--RAARGPPKRPAGGQTGGVEAASGEERS 109
Query: 116 DTEAPTFPNPAPLLLPPSLPAPKARGSYPSSGPRSLPNPAGTRRSAVPSWGARGWGGSEE 175
P P PAP PAP R S + P L G R G GW
Sbjct: 110 QPRRPRRPPPAP---RRPRPAPGRRKSLYEAAP-LLTREKGGRSGRRGDRGDSGWSHGHT 165
Query: 176 TRWGGDPRSQTPGETAFPAVHSG 198
R GG S + G T FP G
Sbjct: 166 ARVGGTGDS-SAGLTTFPGSSRG 187
>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
Length = 1690
Score = 46.6 bits (109), Expect = 2e-05
Identities = 55/176 (31%), Positives = 61/176 (34%), Gaps = 28/176 (15%)
Query: 2 GGQGRSRGGGWGTIAGLAGQGPAHEAGG----------------GERAL--LPGLGRRGP 43
G +G S G + GL GQ A G GER PG+ GP
Sbjct: 1166 GIKGPSGSPGLNGLHGLKGQKGTKGASGLHDVGPPGPVGIPGLKGERGDPGSPGISPPGP 1225
Query: 44 RRIVAAVGGGGRGAPLLPCGAGGRALDRLDDPSPPPHL--PGQSRPRPQTFPRGVFPALG 101
R G G P P GA GRA + DP PP PG PR P G+ P
Sbjct: 1226 RGKKGPPGPPGSSGPPGPAGATGRAPKDIPDPGPPGDQGPPGPDGPRGAPGPPGL-PGSV 1284
Query: 102 DAAQGPEDGLARRKDTEAPTFPNPAPLLLPPSLPA-PKARGSYPSSGPRSLPNPAG 156
D +G E G D P P P PP P G GP P P G
Sbjct: 1285 DLLRG-EPG-----DCGLPGPPGPPGPPGPPGYKGFPGCDGKDGQKGPVGFPGPQG 1334
>gi|239752263 PREDICTED: hypothetical protein XP_002348185 [Homo
sapiens]
Length = 220
Score = 45.8 bits (107), Expect = 4e-05
Identities = 48/143 (33%), Positives = 61/143 (42%), Gaps = 28/143 (19%)
Query: 77 PPPHLPGQSRPRPQTFPRGVFPALG--DAAQGPEDGLARRKDTEAPTFPNPAPLLLPPSL 134
PPP P P P++ P V P G D+ P R D+ P +P ++LPP
Sbjct: 85 PPPGSPDSVVPPPRS-PDSVVPPPGSPDSVVLPP----RSPDSVVPPPGSPDSVVLPPRS 139
Query: 135 P---APKARGSYPSSG-----PRSLPNPAGTRRSAVPSWGARGWGGSEETRWGGDPRSQT 186
P P AR P SG PRSL PA R GA GW G RWG P +++
Sbjct: 140 PDSVVPPARS--PDSGGRAGSPRSLAPPAAARAE-----GAPGWAG----RWGRVPLARS 188
Query: 187 PGETAFPAVHSGLCQKEPHRCSI 209
P + P+ L Q R S+
Sbjct: 189 PPQV--PSRPPSLSQPLSSRVSL 209
>gi|157743252 pecanex-like 3 [Homo sapiens]
Length = 2034
Score = 45.8 bits (107), Expect = 4e-05
Identities = 47/141 (33%), Positives = 53/141 (37%), Gaps = 11/141 (7%)
Query: 62 CGAGGRALDRLDDP--SPPPHLPGQSRPRPQTFPRGVFPA-LGDAAQGPEDGLARRKDTE 118
CGAG + +DD S L S P P A GD P G R
Sbjct: 1825 CGAGCNSGGNVDDSDCSGGGGLTSLSNNPPVAHPTPENTAGNGDQPLPPGPGWGPRSSLS 1884
Query: 119 APTFPNPAPLLL--PPSLPAPKARGSYPSSGPR-SLPNPAGTRRSAVPS--W---GARGW 170
P PLL PP LP P P+ GPR S P G S PS W G +G
Sbjct: 1885 GSGDGRPPPLLQWPPPRLPGPPPASPIPTEGPRTSRPPGPGLLSSEGPSGKWSLGGRKGL 1944
Query: 171 GGSEETRWGGDPRSQTPGETA 191
GGS+ G P+ TP A
Sbjct: 1945 GGSDGEPASGSPKGGTPKSQA 1965
>gi|110556644 zinc finger protein, multitype 1 [Homo sapiens]
Length = 1006
Score = 44.7 bits (104), Expect = 8e-05
Identities = 44/138 (31%), Positives = 55/138 (39%), Gaps = 24/138 (17%)
Query: 105 QGPEDGLARRKDTEAPTFPNPAPLLLPPSLPA-PKARGSYPSSGPRSLPNPAGTRRSAVP 163
+ PED A R+ +AP P P PP PA P A S P G R G +A P
Sbjct: 604 RAPEDAPAARRP-KAP----PGPARAPPGQPAEPDAPRSSPGPGARE----EGAGGAATP 654
Query: 164 SWGARGWG--GSEETRWGGDPRSQTPGETAFPAVHSGLCQKEPHRCSIGFGRLKSSCFNV 221
GA G G GS+ D P T LC+ C+I F R ++ +
Sbjct: 655 EDGAGGRGSEGSQSPGSSVDDAEDDPSRT--------LCEA----CNIRFSRHETYTVHK 702
Query: 222 NEILRPRHERPSRRPRCP 239
RH+ P RRP P
Sbjct: 703 RYYCASRHDPPPRRPAAP 720
Score = 40.4 bits (93), Expect = 0.001
Identities = 36/107 (33%), Positives = 44/107 (41%), Gaps = 27/107 (25%)
Query: 56 GAPLLPCGAGGRA-LDRLDDPSPPPHLPGQSRPRPQTFPRGVFPALGDAAQGPEDGLARR 114
GAPL G R DR P+P P + P+P ++GP DGL
Sbjct: 882 GAPLAGPGVEARTPADRGPSPAPAP----AASPQP-------------GSRGPRDGLGPE 924
Query: 115 KDTEAPTFPNPAPLLLPPSLPAPKARGSY-------PSSG-PRSLPN 153
E P P P+P P ++P P A SY PS G P LPN
Sbjct: 925 PQ-EPPPGPPPSPAAAPEAVPPPPAPPSYSDKGVQTPSKGTPAPLPN 970
Score = 33.9 bits (76), Expect = 0.14
Identities = 35/100 (35%), Positives = 40/100 (40%), Gaps = 17/100 (17%)
Query: 43 PRRIVAAVGGGGRGAPLLPCGAGG------RALDRLD-----DPSPPPHLPGQSRPRPQT 91
PRR A G G AP P A R L L P PP H P PRP +
Sbjct: 714 PRRPAAPPGPPGPAAPPAPSPAAPVRTRRRRKLYELHAAGAPPPPPPGHAPAPESPRPGS 773
Query: 92 ---FPRGVFPAL--GDAAQGPEDGLARRKDTEAPTFPNPA 126
G+ PA G AA GP D L+++ P P PA
Sbjct: 774 GSGSGPGLAPARSPGPAADGPID-LSKKPRRPLPGAPAPA 812
Score = 30.4 bits (67), Expect = 1.5
Identities = 45/165 (27%), Positives = 53/165 (32%), Gaps = 23/165 (13%)
Query: 52 GGGRGAPLLPCGAGGRALDRLDDPSPPPHLPGQSRPRPQTFPRGVFPALGDAAQGPEDGL 111
G G G L P + G A D D S P P P P A + E L
Sbjct: 774 GSGSGPGLAPARSPGPAADGPIDLSKKPRRPLPGAPAPALADYHECTACRVSFHSLEAYL 833
Query: 112 ARRKDTEAPTFPNPAPLLLPPSL-----PAPKARGSY--------------PSSGPR-SL 151
A +K P P P L LP + P RG P +GP
Sbjct: 834 AHKK-YSCPAAPPPGALGLPAAACPYCPPNGPVRGDLLEHFRLAHGLLLGAPLAGPGVEA 892
Query: 152 PNPAGTRRSAVPSWGARGWGGSEETR--WGGDPRSQTPGETAFPA 194
PA S P+ A GS R G +P+ PG PA
Sbjct: 893 RTPADRGPSPAPAPAASPQPGSRGPRDGLGPEPQEPPPGPPPSPA 937
>gi|55741655 anoctamin 8 [Homo sapiens]
Length = 1232
Score = 44.3 bits (103), Expect = 1e-04
Identities = 49/164 (29%), Positives = 60/164 (36%), Gaps = 19/164 (11%)
Query: 2 GGQGRSRGGGWGTIAGLAGQGPAHEAGGGERALLPGLGRRGPRRIVAAVGGGGRGAPLLP 61
GGQ R G +G +G + AL L P G G L P
Sbjct: 1070 GGQARPDG------TPSSGSSRVQRSGPVDEALAEELEAPRPEE-------EGSGTALAP 1116
Query: 62 CGAGGRALDRLDDPSPPPHLPGQSRPRPQTFPRGVFPALGDAAQGPEDGLARRKDTEAPT 121
GA R P+PPP +P PRP T P G + G G E G A R+ A
Sbjct: 1117 VGAPALRTRRSRSPAPPPPMP---LPRPPTPPAGCWQWDGPWGCGGE-GAAPRQALAAAE 1172
Query: 122 FPNPAPLLLPPSLPAP-KARGSYPSSGPRSLPNPAGTRRSAVPS 164
P P + PP P P S+ S P LP + + PS
Sbjct: 1173 CP-PCAMAGPPPAPQPLPGDASFYSLPPPPLPPTSDPLETPAPS 1215
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 44.3 bits (103), Expect = 1e-04
Identities = 58/200 (29%), Positives = 67/200 (33%), Gaps = 20/200 (10%)
Query: 10 GGWGTIAGLAGQGPAHEAGGGERALLPGL-GRRGPRRIVAAVGGGGRGAPLLPCGAGGRA 68
G G + GP + G A PG G RGP A G G LP G R
Sbjct: 212 GASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGARGLPGTAG--LPGMKGHRG 269
Query: 69 LDRLDD---------PSPPPHLPGQSRPRPQTFPRGVFPALG-DAAQGPEDGLARRKDTE 118
LD P P PG++ Q PRG+ G A GP T
Sbjct: 270 FSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDGATG 329
Query: 119 APTFPNPAPLLLPPSLP-APKARGSYPSSGPRSLPNPAGTRRSAVPSW--GARGWGGSEE 175
A P P PP P A A+G GPR P G R P GA G G+
Sbjct: 330 AAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGPAGNP- 388
Query: 176 TRWGGDPRSQTPGETAFPAV 195
G D + G P +
Sbjct: 389 ---GADGQPGAKGANGAPGI 405
Score = 42.4 bits (98), Expect = 4e-04
Identities = 50/184 (27%), Positives = 63/184 (34%), Gaps = 21/184 (11%)
Query: 6 RSRGGGWGTIAGLAGQGPAHEAG-GGERALLPGLGRRGPRRIVAAVGGGGRGAPLLPCGA 64
R G G GPA G G G +GPR G G P P GA
Sbjct: 322 RGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGA 381
Query: 65 GGRALDRLDDPSP-------------PPHLPGQSRPRPQTFPRGVFPALGDAAQGPEDGL 111
G A + D P P PG P P G G++ + G
Sbjct: 382 AGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGEPGAPG- 440
Query: 112 ARRKDTEAPTFPNPAPLLLPPSLPAPKA-RGSYPSSGPRSLPNPAGTRRSAVPSWGARGW 170
+ DT A P P + PP + RG+ GP LP P G R G+RG+
Sbjct: 441 -SKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGP----GSRGF 495
Query: 171 GGSE 174
G++
Sbjct: 496 PGAD 499
Score = 41.6 bits (96), Expect = 7e-04
Identities = 56/178 (31%), Positives = 64/178 (35%), Gaps = 27/178 (15%)
Query: 30 GERALLPGLGRRGPRRIVAAVGGGGRGAPLLPCGAGGRALDRLDDPSPPPHLPGQSRPRP 89
G R L +G GP G G P P GA G DR +P PP P
Sbjct: 761 GVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGAPGDR-GEPGPP-------GPAG 812
Query: 90 QTFPRGVFPALGDAAQGPEDGLARRKDTEAPTFPNPAPLLLPP----SLPAPKARGSYPS 145
P G A G E G A K P P PA PP ++ AP A+G+ S
Sbjct: 813 FAGPPG---ADGQPGAKGEPGDAGAKGDAGP--PGPAGPAGPPGPIGNVGAPGAKGARGS 867
Query: 146 SGP---RSLPNPAGTRRSAVPSW--GARGWGGSEETRWGGDPRSQT-----PGETAFP 193
+GP P AG PS G G G G PR +T PGE P
Sbjct: 868 AGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPP 925
Score = 40.0 bits (92), Expect = 0.002
Identities = 58/202 (28%), Positives = 68/202 (33%), Gaps = 30/202 (14%)
Query: 2 GGQGRSRGGGWGTIAGLAG-QGPAHEAG-GGERALLPGLGRRGPRRIVAAVGGGGRGAPL 59
G G G + G G +G A E G GER + G GP G G P
Sbjct: 566 GPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPA 625
Query: 60 LPCG-------AGGRALDRLDDPSPPPHLPGQSRPRPQTFPRGVFPALGDAAQGPEDGLA 112
P G AG L P+ PP G +P Q P G A G + E G
Sbjct: 626 GPAGERGEQGPAGSPGFQGLPGPAGPPGEAG--KPGEQGVP-GDLGAPGPSGARGERGFP 682
Query: 113 RRKDTEAPTFP------NPAPLL-----------LPPSLPAPKARGSYPSSGPRSLPNPA 155
+ + P P N AP P S AP +G G LP P
Sbjct: 683 GERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPK 742
Query: 156 GTRRSAVPSWGARGWGGSEETR 177
G R A P GA G G + R
Sbjct: 743 GDRGDAGPK-GADGSPGKDGVR 763
Score = 39.7 bits (91), Expect = 0.003
Identities = 47/162 (29%), Positives = 55/162 (33%), Gaps = 16/162 (9%)
Query: 2 GGQGRSRGGGWGTIAGLAGQ-GPAHEAG-GGERALLPGLGRRGPRRIVAAVGGGGRGAPL 59
G +G + G G G GP AG G+R G GP V A G G P
Sbjct: 1034 GDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPR 1093
Query: 60 LPCGAGGRALDR----------LDDPSPPPHLPGQSRPRPQTFPRGVFPALGDAAQGPED 109
G G DR L P PP PG+ P + P G G A +D
Sbjct: 1094 GDKGETGEQGDRGIKGHRGFSGLQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGKD 1153
Query: 110 GLARRKDTEAPTFP----NPAPLLLPPSLPAPKARGSYPSSG 147
GL P P A + PP P P PS+G
Sbjct: 1154 GLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSAG 1195
Score = 39.3 bits (90), Expect = 0.003
Identities = 54/177 (30%), Positives = 66/177 (37%), Gaps = 20/177 (11%)
Query: 2 GGQGRSRGGGWGTIAGLAGQ-GPAHEAGGGERALLPGLGRRGPRRIVAAVGGGGRGAPLL 60
G +G G G AG GP E G PG + GPR + G RG P
Sbjct: 263 GMKGHRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPG--QMGPRGLP-----GERGRPGA 315
Query: 61 PCGAGGRALDRLDDPSPPPHLPGQSRPRPQTFPRGVFPALGDAA-QGPEDGLARRKDTEA 119
P AG R D + PP G + P FP G A G+A QGP +
Sbjct: 316 PGPAGARGNDGATGAAGPPGPTGPA--GPPGFP-GAVGAKGEAGPQGPRGSEGPQGVRGE 372
Query: 120 PTFPNPAPLLLPPSLPA----PKARGSYPSSGPRSLPNPAGTRRSAVPSWGARGWGG 172
P P PA P P P A+G+ + G P G R + G +G GG
Sbjct: 373 PGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPS----GPQGPGG 425
Score = 37.0 bits (84), Expect = 0.016
Identities = 54/206 (26%), Positives = 65/206 (31%), Gaps = 19/206 (9%)
Query: 2 GGQGRSRGGGWGTIAGLAGQGPAHEAGGGERALLPGLGRRGPRRIVAAVGGGGRGAPLLP 61
G +G+ G GL G P G G R G GP+ G G P
Sbjct: 464 GEEGKRGARGEPGPTGLPGP-PGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGS 522
Query: 62 CGAGGRALDR-LDDPSPPPHLPGQSRPRPQTFPRGVFPALGDAAQGPEDGLARRKDTEAP 120
G GR + L PG P +T P G PA D GP R
Sbjct: 523 PGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPG--PAGQDGRPGPPGPPGARGQAGVM 580
Query: 121 TFPNPAPLLLPP------SLPAPKAR-------GSYPSSGPRSLPNPAGTRRSAVPSWGA 167
FP P P +P P G + GP PAG R P+ G+
Sbjct: 581 GFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPA-GS 639
Query: 168 RGWGGSEETRWGGDPRSQTPGETAFP 193
G+ G G + PGE P
Sbjct: 640 PGFQGLPGPA-GPPGEAGKPGEQGVP 664
Score = 35.0 bits (79), Expect = 0.062
Identities = 59/197 (29%), Positives = 66/197 (33%), Gaps = 29/197 (14%)
Query: 2 GGQGRSRG-----GGWGTIAGLAGQGPAHEAGG-GERALLPGLGRRGPRRIVAAVGGGGR 55
GG+G RG G G + GPA E G G G GP+ I G R
Sbjct: 905 GGKG-PRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIA-----GQR 958
Query: 56 GAPLLPCGAGGRALDRLDDPSPPPHLPGQSRPRPQTFPRGVFPALG----------DAAQ 105
G LP G R L PS P G S + P G G + A
Sbjct: 959 GVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAP 1018
Query: 106 GPE-----DGLARRKDTEAPTFPNPAPLLLPPSLPAPKARGSYPSSGPRSLPNPAGTRRS 160
G E DG K T P P P + AP G SG R PAG
Sbjct: 1019 GAEGSPGRDGSPGAKGDRGETGP-AGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGP 1077
Query: 161 AVPSWGARGWGGSEETR 177
P GARG G + R
Sbjct: 1078 VGPV-GARGPAGPQGPR 1093
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 43.9 bits (102), Expect = 1e-04
Identities = 52/179 (29%), Positives = 67/179 (37%), Gaps = 29/179 (16%)
Query: 16 AGLAGQGP-AHEAGGGERALLP-GLGRRGPRRIVAAVGGGGRGAPLLP--CGAGGRALDR 71
AG G+ P A AGG A +P R GP R + G R P G G RA
Sbjct: 50 AGAVGRKPLAERAGGIGGATIPESAPRAGPTR---SAGTSSRNPASRPPASGRGERAPPA 106
Query: 72 LDDPSPPPHLPGQSRPRPQTFPRGV---------FPALGDAAQGPEDGL---ARRKDTEA 119
+ P PG++ + P G A G A + P+ R+DT
Sbjct: 107 KNTSPGPVSSPGRASGTTRPGPLGQKGLRISAEETVARGKATEAPKRSALSAGARRDTSG 166
Query: 120 PTFPNPAPLLLPPSL----------PAPKARGSYPSSGPRSLPNPAGTRRSAVPSWGAR 168
PT P+P + S PAP AR P+ GPR + A + PS AR
Sbjct: 167 PTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAAR 225
Score = 32.0 bits (71), Expect = 0.53
Identities = 44/170 (25%), Positives = 59/170 (34%), Gaps = 23/170 (13%)
Query: 13 GTIAGLAGQGPAHEAG---GGERALLPGLGRRGPRRIVAAVG------GGGRGAPLLPCG 63
G +G GP + G E + G P+R + G G G P
Sbjct: 118 GRASGTTRPGPLGQKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMA 177
Query: 64 AGGRALD-RLDDPSPPPHLPGQSRPRPQTF-PRGVFPALGDAAQGPEDGLARRKDTEAPT 121
RA + P P P +RPRP T PR + + + ARR+ +
Sbjct: 178 RRSRAAGTEVGLPRPAP----SARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGG 233
Query: 122 FPNPAPLLL-----PPSLPA---PKARGSYPSSGPRSLPNPAGTRRSAVP 163
PA L P S PA P ARG+ + S P P G + P
Sbjct: 234 LQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPP 283
Score = 31.2 bits (69), Expect = 0.90
Identities = 30/92 (32%), Positives = 34/92 (36%), Gaps = 5/92 (5%)
Query: 75 PSPPPHLPGQSRPRPQTFPRGVFPALGDAAQGPEDGLARRKDTEAPTFPN--PAPLLLPP 132
PSPP L + P PQ P P L P T +P PN LL P
Sbjct: 382 PSPP--LSPLATPPPQAPPALALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAP 439
Query: 133 SLPAPKARGSYPSSGPRSLP-NPAGTRRSAVP 163
P P P S P S P +P+ T S P
Sbjct: 440 FSPPPSPPVQAPFSPPASPPVSPSATPPSQAP 471
Score = 30.8 bits (68), Expect = 1.2
Identities = 26/76 (34%), Positives = 31/76 (40%), Gaps = 15/76 (19%)
Query: 75 PSPPPHL---PGQSRPRPQTFPRGVFPALGDAAQGPEDGLARRKDTEAPTFPNPAPLLLP 131
P+PP PG P P PA G G DGL +TE P PAP L
Sbjct: 675 PAPPLAFRGAPGAPLPWP--------PATGP---GSADGLCTIYETEGPESATPAPGALD 723
Query: 132 PSLPAPKARGSYPSSG 147
P P+P G ++G
Sbjct: 724 PG-PSPGTSGGKAAAG 738
Score = 28.1 bits (61), Expect = 7.6
Identities = 38/148 (25%), Positives = 45/148 (30%), Gaps = 22/148 (14%)
Query: 75 PSPPPHLPGQ--------------SRPRPQTFPRGVFPAL---GDAAQGPEDGLARRKDT 117
PSPP PGQ + P PQ P P L P RR T
Sbjct: 532 PSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPT 591
Query: 118 EAPTFPNPAPLLLPPSLPAPKARGSYPSSGPRSLPNPAGTRRSAVPS-WGARGWGGSEET 176
P P L P P S S S P+ AG SA + RG+ E
Sbjct: 592 PGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPE- 650
Query: 177 RWGGDPRSQTPGETAFPAVHSGLCQKEP 204
G + P + A H + P
Sbjct: 651 ---GGAAASPPPDAELAACHPAAWSRGP 675
Score = 27.7 bits (60), Expect = 9.9
Identities = 27/88 (30%), Positives = 33/88 (37%), Gaps = 20/88 (22%)
Query: 76 SPPPHLPGQSRPRPQTFPRGVFPALGDAAQGPEDGLARRKDTEAPTFPNPAPLLLPPSLP 135
SPPP P Q+ P P V P+ +Q P P+ P PL +PPS P
Sbjct: 441 SPPPSPPVQAPFSPPASPP-VSPSATPPSQAP------------PSLAAP-PLQVPPSPP 486
Query: 136 APKARGSYPSSGPRSLPNPAGTRRSAVP 163
A P P + P P A P
Sbjct: 487 AS------PPMSPSATPPPQAPPPLAAP 508
>gi|239752265 PREDICTED: hypothetical protein XP_002348186 [Homo
sapiens]
Length = 225
Score = 43.9 bits (102), Expect = 1e-04
Identities = 47/142 (33%), Positives = 60/142 (42%), Gaps = 28/142 (19%)
Query: 78 PPHLPGQSRPRPQTFPRGVFPALG--DAAQGPEDGLARRKDTEAPTFPNPAPLLLPPSLP 135
PP P P P++ P V P G D+ P R D+ P +P ++LPP P
Sbjct: 91 PPRSPDSVVPPPRS-PDSVVPPPGSPDSVVLPP----RSPDSVVPPPGSPDSVVLPPRSP 145
Query: 136 ---APKARGSYPSSG-----PRSLPNPAGTRRSAVPSWGARGWGGSEETRWGGDPRSQTP 187
P AR P SG PRSL PA R GA GW G RWG P +++P
Sbjct: 146 DSVVPPARS--PDSGGRAGSPRSLAPPAAARAE-----GAPGWAG----RWGRVPLARSP 194
Query: 188 GETAFPAVHSGLCQKEPHRCSI 209
+ P+ L Q R S+
Sbjct: 195 PQV--PSRPPSLSQPLSSRVSL 214
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 43.9 bits (102), Expect = 1e-04
Identities = 52/179 (29%), Positives = 67/179 (37%), Gaps = 29/179 (16%)
Query: 16 AGLAGQGP-AHEAGGGERALLP-GLGRRGPRRIVAAVGGGGRGAPLLP--CGAGGRALDR 71
AG G+ P A AGG A +P R GP R + G R P G G RA
Sbjct: 50 AGAVGRKPLAERAGGIGGATIPESAPRAGPTR---SAGTSSRNPASRPPASGRGERAPPA 106
Query: 72 LDDPSPPPHLPGQSRPRPQTFPRGV---------FPALGDAAQGPEDGL---ARRKDTEA 119
+ P PG++ + P G A G A + P+ R+DT
Sbjct: 107 KNTSPGPVSSPGRASGTTRPGPLGQKGLRISAEETVARGKATEAPKRSALSAGARRDTSG 166
Query: 120 PTFPNPAPLLLPPSL----------PAPKARGSYPSSGPRSLPNPAGTRRSAVPSWGAR 168
PT P+P + S PAP AR P+ GPR + A + PS AR
Sbjct: 167 PTPGTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAAR 225
Score = 33.5 bits (75), Expect = 0.18
Identities = 30/102 (29%), Positives = 39/102 (38%), Gaps = 14/102 (13%)
Query: 74 DPSP-----PPHLPGQSRPRPQTFPRGVFPALGDAAQGPEDGLARRKDTEAPTFPNPA-- 126
+PSP P G RP ++ P A GP R P+ P P
Sbjct: 219 EPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAPAH-PSQPKPKGL 277
Query: 127 -----PLLLPPSLPAPKARGSYPSSGPRSLPNPAGTRRSAVP 163
P + PP A A G SS P + P+P+GT+ VP
Sbjct: 278 QALRPPQVTPPRKDAAPALGPL-SSSPLATPSPSGTKARPVP 318
Score = 32.0 bits (71), Expect = 0.53
Identities = 39/137 (28%), Positives = 49/137 (35%), Gaps = 7/137 (5%)
Query: 75 PSPP--PHLPGQSRPRPQTFPRGVFPALGDAAQGPEDGLARRKDTEAPTFPN---PAPLL 129
PSPP P + + P PQ P P L P T P P PL
Sbjct: 708 PSPPASPPMSPSATPPPQAPPPLAAPPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQ 767
Query: 130 LPPSLPAPKARGSYPSSGPRSLPNPAGTRRSAVPSWGARGWGGSEETRWGGDPRS--QTP 187
+PPS PA P++ P A A+PS A G + + P S TP
Sbjct: 768 VPPSPPASLPMSPLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATP 827
Query: 188 GETAFPAVHSGLCQKEP 204
A P + + L Q P
Sbjct: 828 PPQAPPVLAAPLLQVPP 844
Score = 30.8 bits (68), Expect = 1.2
Identities = 26/76 (34%), Positives = 31/76 (40%), Gaps = 15/76 (19%)
Query: 75 PSPPPHL---PGQSRPRPQTFPRGVFPALGDAAQGPEDGLARRKDTEAPTFPNPAPLLLP 131
P+PP PG P P PA G G DGL +TE P PAP L
Sbjct: 944 PAPPLAFRGAPGAPLPWP--------PATGP---GSADGLCTIYETEGPESATPAPGALD 992
Query: 132 PSLPAPKARGSYPSSG 147
P P+P G ++G
Sbjct: 993 PG-PSPGTSGGKAAAG 1007
Score = 28.9 bits (63), Expect = 4.5
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
Query: 118 EAPTFPNPAPLLLPPS---LPAPKARGSYPSSGPRSLPNPAGTRRSAVPS 164
E P P P PL PPS P P+ S + P++ P A +PS
Sbjct: 559 ETPPCPAPCPLQAPPSPLTTPPPETPSSIATPPPQAPPALASPPLQGLPS 608
Score = 28.1 bits (61), Expect = 7.6
Identities = 30/106 (28%), Positives = 38/106 (35%), Gaps = 18/106 (16%)
Query: 76 SPPPHLPGQ-SRPRPQTFPRGVFPALGDAAQGPEDGLARRKDT----------EAPTFPN 124
+PPP P + P PQ P P L P LA +AP P
Sbjct: 578 TPPPETPSSIATPPPQAPPALASPPLQGLPSPPLSPLATPPPQAPPXLALPPLQAPPSPP 637
Query: 125 PAPLLLPPSLPAPKARGSY-------PSSGPRSLPNPAGTRRSAVP 163
+P L P + P+P+A + P S P S P A A P
Sbjct: 638 ASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASP 683
Score = 27.7 bits (60), Expect = 9.9
Identities = 27/88 (30%), Positives = 33/88 (37%), Gaps = 20/88 (22%)
Query: 76 SPPPHLPGQSRPRPQTFPRGVFPALGDAAQGPEDGLARRKDTEAPTFPNPAPLLLPPSLP 135
SPPP P Q+ P P V P+ +Q P P+ P PL +PPS P
Sbjct: 666 SPPPSPPVQAPFSPPASPP-VSPSATPPSQAP------------PSLAAP-PLQVPPSPP 711
Query: 136 APKARGSYPSSGPRSLPNPAGTRRSAVP 163
A P P + P P A P
Sbjct: 712 AS------PPMSPSATPPPQAPPPLAAP 733
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 42.7 bits (99), Expect = 3e-04
Identities = 53/176 (30%), Positives = 66/176 (37%), Gaps = 32/176 (18%)
Query: 16 AGLAGQGP-AHEAGGGERALLP-GLGRRGPRRIVA--AVGGGGRGAPLLPCGAGGRALDR 71
AG G+ P A AGG A +P R GP R A G G R P G
Sbjct: 50 AGAVGRKPLAERAGGIGGATIPESAPRAGPTRTSRPPASGRGERAPPAKNTSPG------ 103
Query: 72 LDDPSPPPHLPGQSRPRPQTFPRGV------FPALGDAAQGPEDGL---ARRKDTEAPTF 122
S P G +RP P +G+ A G A + P+ R+DT PT
Sbjct: 104 --PVSSPGRASGTTRPGPLG-QKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPTP 160
Query: 123 PNPAPLLLPPSL----------PAPKARGSYPSSGPRSLPNPAGTRRSAVPSWGAR 168
P+P + S PAP AR P+ GPR + A + PS AR
Sbjct: 161 GTPSPAMARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAAR 216
Score = 32.0 bits (71), Expect = 0.53
Identities = 44/170 (25%), Positives = 59/170 (34%), Gaps = 23/170 (13%)
Query: 13 GTIAGLAGQGPAHEAG---GGERALLPGLGRRGPRRIVAAVG------GGGRGAPLLPCG 63
G +G GP + G E + G P+R + G G G P
Sbjct: 109 GRASGTTRPGPLGQKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMA 168
Query: 64 AGGRALD-RLDDPSPPPHLPGQSRPRPQTF-PRGVFPALGDAAQGPEDGLARRKDTEAPT 121
RA + P P P +RPRP T PR + + + ARR+ +
Sbjct: 169 RRSRAAGTEVGLPRPAP----SARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGG 224
Query: 122 FPNPAPLLL-----PPSLPA---PKARGSYPSSGPRSLPNPAGTRRSAVP 163
PA L P S PA P ARG+ + S P P G + P
Sbjct: 225 LQRPASRSLSSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPP 274
Score = 31.2 bits (69), Expect = 0.90
Identities = 30/92 (32%), Positives = 34/92 (36%), Gaps = 5/92 (5%)
Query: 75 PSPPPHLPGQSRPRPQTFPRGVFPALGDAAQGPEDGLARRKDTEAPTFPN--PAPLLLPP 132
PSPP L + P PQ P P L P T +P PN LL P
Sbjct: 343 PSPP--LSPLATPPPQAPPALALPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAP 400
Query: 133 SLPAPKARGSYPSSGPRSLP-NPAGTRRSAVP 163
P P P S P S P +P+ T S P
Sbjct: 401 FSPPPSPPVQAPFSPPASPPVSPSATPPSQAP 432
Score = 30.8 bits (68), Expect = 1.2
Identities = 26/76 (34%), Positives = 31/76 (40%), Gaps = 15/76 (19%)
Query: 75 PSPPPHL---PGQSRPRPQTFPRGVFPALGDAAQGPEDGLARRKDTEAPTFPNPAPLLLP 131
P+PP PG P P PA G G DGL +TE P PAP L
Sbjct: 636 PAPPLAFRGAPGAPLPWP--------PATGP---GSADGLCTIYETEGPESATPAPGALD 684
Query: 132 PSLPAPKARGSYPSSG 147
P P+P G ++G
Sbjct: 685 PG-PSPGTSGGKAAAG 699
Score = 28.9 bits (63), Expect = 4.5
Identities = 45/171 (26%), Positives = 53/171 (30%), Gaps = 15/171 (8%)
Query: 79 PHLPGQSRPRPQTFPRGVFPALGDAAQGPEDGLARRKDTEAPTFPNPAPLLLPPSLPAPK 138
P PG RP P P + A G + R T P AP P P
Sbjct: 27 PRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATIPESAPRAGPTRTSRPP 86
Query: 139 ARG--------SYPSSGPRSLPNPA-GTRRSAVPSWGARGWGGSEETRWGGDPRSQTPGE 189
A G S GP S P A GT R G +G S E ++ P
Sbjct: 87 ASGRGERAPPAKNTSPGPVSSPGRASGTTRPG--PLGQKGLRISAEETVARGKATEAPKR 144
Query: 190 TAFPA-VHSGLCQKEPHRCSIGFGRLKSSCFNVNEILRPRHERPSRRPRCP 239
+A A P S R + + RP PS RPR P
Sbjct: 145 SALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRP---APSARPRPP 192
Score = 28.1 bits (61), Expect = 7.6
Identities = 38/148 (25%), Positives = 45/148 (30%), Gaps = 22/148 (14%)
Query: 75 PSPPPHLPGQ--------------SRPRPQTFPRGVFPAL---GDAAQGPEDGLARRKDT 117
PSPP PGQ + P PQ P P L P RR T
Sbjct: 493 PSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPT 552
Query: 118 EAPTFPNPAPLLLPPSLPAPKARGSYPSSGPRSLPNPAGTRRSAVPS-WGARGWGGSEET 176
P P L P P S S S P+ AG SA + RG+ E
Sbjct: 553 PGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPE- 611
Query: 177 RWGGDPRSQTPGETAFPAVHSGLCQKEP 204
G + P + A H + P
Sbjct: 612 ---GGAAASPPPDAELAACHPAAWSRGP 636
Score = 27.7 bits (60), Expect = 9.9
Identities = 27/88 (30%), Positives = 33/88 (37%), Gaps = 20/88 (22%)
Query: 76 SPPPHLPGQSRPRPQTFPRGVFPALGDAAQGPEDGLARRKDTEAPTFPNPAPLLLPPSLP 135
SPPP P Q+ P P V P+ +Q P P+ P PL +PPS P
Sbjct: 402 SPPPSPPVQAPFSPPASPP-VSPSATPPSQAP------------PSLAAP-PLQVPPSPP 447
Query: 136 APKARGSYPSSGPRSLPNPAGTRRSAVP 163
A P P + P P A P
Sbjct: 448 AS------PPMSPSATPPPQAPPPLAAP 469
>gi|33356148 formin-like 1 [Homo sapiens]
Length = 1100
Score = 42.7 bits (99), Expect = 3e-04
Identities = 36/116 (31%), Positives = 40/116 (34%), Gaps = 15/116 (12%)
Query: 47 VAAVGGGGRGAPLLPCGAGGRALDRLDDPSP------PPHLPGQSRPRPQTFPRGVFPAL 100
VA GG P +P G+ L +P+P PP LPG P PQ P P
Sbjct: 508 VATPSGGDAPTPGVPTGSPSPDLAPAAEPAPGAAPPPPPPLPGL--PSPQEAPPSAPPQA 565
Query: 101 GDAAQGPEDGLARRKDTEAPTFPNPAPLLLPPSLPAPKARGSYPSSGPRSLPNPAG 156
PE AP P P PP P P G P P P P G
Sbjct: 566 PPLPGSPEP-------PPAPPLPGDLPPPPPPPPPPPGTDGPVPPPPPPPPPPPGG 614
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein [Homo
sapiens]
Length = 1650
Score = 42.4 bits (98), Expect = 4e-04
Identities = 57/207 (27%), Positives = 74/207 (35%), Gaps = 25/207 (12%)
Query: 10 GGWGTIAGLAGQGPAHEAGGGERALLPGL----GRRGPRRIVAAVGGGGRGAPLLPCGAG 65
G G G+ GP E G + PG+ G +GPR G G+ P G
Sbjct: 1109 GPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPK 1168
Query: 66 GRALDRLDDPSPPP-HLPGQSRPRPQTFPRGVFPALGDAAQGPEDGLARRKDTEAPTFPN 124
G D +P P PG P + PRG A GD EDG + + PT N
Sbjct: 1169 GPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRG---EDGEPGQPGSPGPTGEN 1225
Query: 125 --PAPLLLPPSLPAPKARGSYPSSGPRSLP------------NPAGTRRSAVPSWGARGW 170
P PL +P + G G + P PAG P G RG
Sbjct: 1226 GPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPD-GLRGL 1284
Query: 171 GGS--EETRWGGDPRSQTPGETAFPAV 195
GS ++ R G ++ PG P +
Sbjct: 1285 PGSVGQQGRPGATGQAGPPGPVGPPGL 1311
Score = 39.7 bits (91), Expect = 0.003
Identities = 57/189 (30%), Positives = 66/189 (34%), Gaps = 32/189 (16%)
Query: 22 GPAHEAGGGERALLPGL----GRRGPRRIVAAVGGGGRGAPLLPCGAGGRALDRLDDPSP 77
GP G + +PGL GR+GP+ G G P P +G + L S
Sbjct: 698 GPPGLMGEKGKLGVPGLPGYPGRQGPK--------GSLGFPGFPGASGEKGARGLSGKSG 749
Query: 78 PPHLPGQSRPRPQTFPRGVF-------PALGDAAQGP--EDGLARRKDTEAPTFPNPAPL 128
P G + PR Q PRG + GD GP E GL + FP P
Sbjct: 750 PRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNG--FPGPKGP 807
Query: 129 LLPP---SLPA-PKARGSYPSSGPRSLPNPAGTRRSAVPSWGARGWGGSEETRWGGDPRS 184
PP LP P RG G P P G V GA G G R P
Sbjct: 808 PGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPG----VVGPQGAAGETGPMGERGHPGPPG 863
Query: 185 QTPGETAFP 193
PGE P
Sbjct: 864 -PPGEQGLP 871
Score = 39.3 bits (90), Expect = 0.003
Identities = 68/232 (29%), Positives = 83/232 (35%), Gaps = 50/232 (21%)
Query: 2 GGQGRSRGGGWGTIAGLAGQGPAHEAGG-----GERAL--LPGL-GRRGPRRIVAAVGGG 53
G QG + G G AG A G G+R LPGL G +G R G
Sbjct: 437 GPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHR--------G 488
Query: 54 GRGAPLLPCGAGGRALDRLDDPSPPPH-LPGQSRPRPQTFPRGVFPALG-------DAAQ 105
GA LP G G +R DD P LPG+S PR P+G G D Q
Sbjct: 489 DTGAQGLP-GPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQ 547
Query: 106 GPEDGLARRKDTEAP---------TFPNPAPLLLPPSLPAPKARGSYP----SSGPRSLP 152
GP+ L + + P P P + P P+ + P S GP P
Sbjct: 548 GPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHP 607
Query: 153 ---NPAGTRRSAVPSW--------GARGWGGSEETRWGGDPRSQTPGETAFP 193
P GT+ + PS G RG G + R G GE FP
Sbjct: 608 GKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIR-GLKGHKGEKGEDGFP 658
Score = 39.3 bits (90), Expect = 0.003
Identities = 61/224 (27%), Positives = 74/224 (33%), Gaps = 53/224 (23%)
Query: 3 GQGRSRG--GGWGTIAGLAGQGPAHEAGGGERALLPGLGRRGPRRIVAAVGGGGRGAPLL 60
GQ S G G G L +GPA G R G +G + A+G G+ P+
Sbjct: 1214 GQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQ-----GGKGAKGDPGAIGAPGKTGPVG 1268
Query: 61 PCGAGG-------RALDRLDDPSPPPHLPGQSRPRPQTFPRGVFPALGDAAQGPEDGLAR 113
P G G R L P GQ+ P P G+ GDA E G
Sbjct: 1269 PAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKG--- 1325
Query: 114 RKDTEAPTFPNPAPLLLPPS---------LPAPK-------------ARGSYPSSGPRSL 151
P L+ PP LP P+ A G GP L
Sbjct: 1326 --------HPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGL 1377
Query: 152 PNPAGTRRSAVPSWGARGWGG--SEETRWGGDPRSQTPGETAFP 193
P PAG + + GA G GG E+ G PGE P
Sbjct: 1378 PGPAGPKGAK----GATGPGGPKGEKGVQGPPGHPGPPGEVIQP 1417
Score = 32.7 bits (73), Expect = 0.31
Identities = 46/168 (27%), Positives = 57/168 (33%), Gaps = 26/168 (15%)
Query: 17 GLAGQ-GPAHEAGG-------GERALLPGLGRRGPRRIVAAVGGGGRGAPL--------- 59
G AG+ GP E G GE+ L G+ G + G G+ P
Sbjct: 845 GAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGER 904
Query: 60 -LPCGAGGRALDRLDDPSPPPHLPGQSRPRPQTFPRG-VFPALGDAAQGP-----EDGLA 112
LP AGG L + PS PP G R G + P QGP E G+
Sbjct: 905 GLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVP 964
Query: 113 RRKDTEAPTFPN--PAPLLLPPSLPAPKARGSYPSSGPRSLPNPAGTR 158
K PT + P+ LP P G G P GT+
Sbjct: 965 GEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTK 1012
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein [Homo
sapiens]
Length = 1629
Score = 42.4 bits (98), Expect = 4e-04
Identities = 57/207 (27%), Positives = 74/207 (35%), Gaps = 25/207 (12%)
Query: 10 GGWGTIAGLAGQGPAHEAGGGERALLPGL----GRRGPRRIVAAVGGGGRGAPLLPCGAG 65
G G G+ GP E G + PG+ G +GPR G G+ P G
Sbjct: 1088 GPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPK 1147
Query: 66 GRALDRLDDPSPPP-HLPGQSRPRPQTFPRGVFPALGDAAQGPEDGLARRKDTEAPTFPN 124
G D +P P PG P + PRG A GD EDG + + PT N
Sbjct: 1148 GPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRG---EDGEPGQPGSPGPTGEN 1204
Query: 125 --PAPLLLPPSLPAPKARGSYPSSGPRSLP------------NPAGTRRSAVPSWGARGW 170
P PL +P + G G + P PAG P G RG
Sbjct: 1205 GPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPD-GLRGL 1263
Query: 171 GGS--EETRWGGDPRSQTPGETAFPAV 195
GS ++ R G ++ PG P +
Sbjct: 1264 PGSVGQQGRPGATGQAGPPGPVGPPGL 1290
Score = 39.7 bits (91), Expect = 0.003
Identities = 57/189 (30%), Positives = 66/189 (34%), Gaps = 32/189 (16%)
Query: 22 GPAHEAGGGERALLPGL----GRRGPRRIVAAVGGGGRGAPLLPCGAGGRALDRLDDPSP 77
GP G + +PGL GR+GP+ G G P P +G + L S
Sbjct: 677 GPPGLMGEKGKLGVPGLPGYPGRQGPK--------GSLGFPGFPGASGEKGARGLSGKSG 728
Query: 78 PPHLPGQSRPRPQTFPRGVF-------PALGDAAQGP--EDGLARRKDTEAPTFPNPAPL 128
P G + PR Q PRG + GD GP E GL + FP P
Sbjct: 729 PRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNG--FPGPKGP 786
Query: 129 LLPP---SLPA-PKARGSYPSSGPRSLPNPAGTRRSAVPSWGARGWGGSEETRWGGDPRS 184
PP LP P RG G P P G V GA G G R P
Sbjct: 787 PGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPG----VVGPQGAAGETGPMGERGHPGPPG 842
Query: 185 QTPGETAFP 193
PGE P
Sbjct: 843 -PPGEQGLP 850
Score = 39.3 bits (90), Expect = 0.003
Identities = 68/232 (29%), Positives = 83/232 (35%), Gaps = 50/232 (21%)
Query: 2 GGQGRSRGGGWGTIAGLAGQGPAHEAGG-----GERAL--LPGL-GRRGPRRIVAAVGGG 53
G QG + G G AG A G G+R LPGL G +G R G
Sbjct: 416 GPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHR--------G 467
Query: 54 GRGAPLLPCGAGGRALDRLDDPSPPPH-LPGQSRPRPQTFPRGVFPALG-------DAAQ 105
GA LP G G +R DD P LPG+S PR P+G G D Q
Sbjct: 468 DTGAQGLP-GPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQ 526
Query: 106 GPEDGLARRKDTEAP---------TFPNPAPLLLPPSLPAPKARGSYP----SSGPRSLP 152
GP+ L + + P P P + P P+ + P S GP P
Sbjct: 527 GPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHP 586
Query: 153 ---NPAGTRRSAVPSW--------GARGWGGSEETRWGGDPRSQTPGETAFP 193
P GT+ + PS G RG G + R G GE FP
Sbjct: 587 GKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIR-GLKGHKGEKGEDGFP 637
Score = 39.3 bits (90), Expect = 0.003
Identities = 61/224 (27%), Positives = 74/224 (33%), Gaps = 53/224 (23%)
Query: 3 GQGRSRG--GGWGTIAGLAGQGPAHEAGGGERALLPGLGRRGPRRIVAAVGGGGRGAPLL 60
GQ S G G G L +GPA G R G +G + A+G G+ P+
Sbjct: 1193 GQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQ-----GGKGAKGDPGAIGAPGKTGPVG 1247
Query: 61 PCGAGG-------RALDRLDDPSPPPHLPGQSRPRPQTFPRGVFPALGDAAQGPEDGLAR 113
P G G R L P GQ+ P P G+ GDA E G
Sbjct: 1248 PAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKG--- 1304
Query: 114 RKDTEAPTFPNPAPLLLPPS---------LPAPK-------------ARGSYPSSGPRSL 151
P L+ PP LP P+ A G GP L
Sbjct: 1305 --------HPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGL 1356
Query: 152 PNPAGTRRSAVPSWGARGWGG--SEETRWGGDPRSQTPGETAFP 193
P PAG + + GA G GG E+ G PGE P
Sbjct: 1357 PGPAGPKGAK----GATGPGGPKGEKGVQGPPGHPGPPGEVIQP 1396
Score = 32.7 bits (73), Expect = 0.31
Identities = 46/168 (27%), Positives = 57/168 (33%), Gaps = 26/168 (15%)
Query: 17 GLAGQ-GPAHEAGG-------GERALLPGLGRRGPRRIVAAVGGGGRGAPL--------- 59
G AG+ GP E G GE+ L G+ G + G G+ P
Sbjct: 824 GAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGER 883
Query: 60 -LPCGAGGRALDRLDDPSPPPHLPGQSRPRPQTFPRG-VFPALGDAAQGP-----EDGLA 112
LP AGG L + PS PP G R G + P QGP E G+
Sbjct: 884 GLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVP 943
Query: 113 RRKDTEAPTFPN--PAPLLLPPSLPAPKARGSYPSSGPRSLPNPAGTR 158
K PT + P+ LP P G G P GT+
Sbjct: 944 GEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTK 991
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein [Homo
sapiens]
Length = 1736
Score = 42.4 bits (98), Expect = 4e-04
Identities = 57/207 (27%), Positives = 74/207 (35%), Gaps = 25/207 (12%)
Query: 10 GGWGTIAGLAGQGPAHEAGGGERALLPGL----GRRGPRRIVAAVGGGGRGAPLLPCGAG 65
G G G+ GP E G + PG+ G +GPR G G+ P G
Sbjct: 1195 GPQGPPGGVGNLGPPGEKGEPGESGSPGIQGEPGVKGPRGERGEKGESGQPGEPGPPGPK 1254
Query: 66 GRALDRLDDPSPPP-HLPGQSRPRPQTFPRGVFPALGDAAQGPEDGLARRKDTEAPTFPN 124
G D +P P PG P + PRG A GD EDG + + PT N
Sbjct: 1255 GPTGDDGPKGNPGPVGFPGDPGPPGEGGPRGQDGAKGDRG---EDGEPGQPGSPGPTGEN 1311
Query: 125 --PAPLLLPPSLPAPKARGSYPSSGPRSLP------------NPAGTRRSAVPSWGARGW 170
P PL +P + G G + P PAG P G RG
Sbjct: 1312 GPPGPLGKRGPAGSPGSEGRQGGKGAKGDPGAIGAPGKTGPVGPAGPAGKPGPD-GLRGL 1370
Query: 171 GGS--EETRWGGDPRSQTPGETAFPAV 195
GS ++ R G ++ PG P +
Sbjct: 1371 PGSVGQQGRPGATGQAGPPGPVGPPGL 1397
Score = 39.7 bits (91), Expect = 0.003
Identities = 57/189 (30%), Positives = 66/189 (34%), Gaps = 32/189 (16%)
Query: 22 GPAHEAGGGERALLPGL----GRRGPRRIVAAVGGGGRGAPLLPCGAGGRALDRLDDPSP 77
GP G + +PGL GR+GP+ G G P P +G + L S
Sbjct: 784 GPPGLMGEKGKLGVPGLPGYPGRQGPK--------GSLGFPGFPGASGEKGARGLSGKSG 835
Query: 78 PPHLPGQSRPRPQTFPRGVF-------PALGDAAQGP--EDGLARRKDTEAPTFPNPAPL 128
P G + PR Q PRG + GD GP E GL + FP P
Sbjct: 836 PRGERGPTGPRGQRGPRGATGKSGAKGTSGGDGPHGPPGERGLPGPQGPNG--FPGPKGP 893
Query: 129 LLPP---SLPA-PKARGSYPSSGPRSLPNPAGTRRSAVPSWGARGWGGSEETRWGGDPRS 184
PP LP P RG G P P G V GA G G R P
Sbjct: 894 PGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPG----VVGPQGAAGETGPMGERGHPGPPG 949
Query: 185 QTPGETAFP 193
PGE P
Sbjct: 950 -PPGEQGLP 957
Score = 39.3 bits (90), Expect = 0.003
Identities = 68/232 (29%), Positives = 83/232 (35%), Gaps = 50/232 (21%)
Query: 2 GGQGRSRGGGWGTIAGLAGQGPAHEAGG-----GERAL--LPGL-GRRGPRRIVAAVGGG 53
G QG + G G AG A G G+R LPGL G +G R G
Sbjct: 523 GPQGLTGPPGKAGRRGRAGADGARGMPGDPGVKGDRGFDGLPGLPGEKGHR--------G 574
Query: 54 GRGAPLLPCGAGGRALDRLDDPSPPPH-LPGQSRPRPQTFPRGVFPALG-------DAAQ 105
GA LP G G +R DD P LPG+S PR P+G G D Q
Sbjct: 575 DTGAQGLP-GPPGEDGERGDDGEIGPRGLPGESGPRGLLGPKGPPGIPGPPGVRGMDGPQ 633
Query: 106 GPEDGLARRKDTEAP---------TFPNPAPLLLPPSLPAPKARGSYP----SSGPRSLP 152
GP+ L + + P P P + P P+ + P S GP P
Sbjct: 634 GPKGSLGPQGEPGPPGQQGTPGTQGLPGPQGAIGPHGEKGPQGKPGLPGMPGSDGPPGHP 693
Query: 153 ---NPAGTRRSAVPSW--------GARGWGGSEETRWGGDPRSQTPGETAFP 193
P GT+ + PS G RG G + R G GE FP
Sbjct: 694 GKEGPPGTKGNQGPSGPQGPLGYPGPRGVKGVDGIR-GLKGHKGEKGEDGFP 744
Score = 39.3 bits (90), Expect = 0.003
Identities = 61/224 (27%), Positives = 74/224 (33%), Gaps = 53/224 (23%)
Query: 3 GQGRSRG--GGWGTIAGLAGQGPAHEAGGGERALLPGLGRRGPRRIVAAVGGGGRGAPLL 60
GQ S G G G L +GPA G R G +G + A+G G+ P+
Sbjct: 1300 GQPGSPGPTGENGPPGPLGKRGPAGSPGSEGRQ-----GGKGAKGDPGAIGAPGKTGPVG 1354
Query: 61 PCGAGG-------RALDRLDDPSPPPHLPGQSRPRPQTFPRGVFPALGDAAQGPEDGLAR 113
P G G R L P GQ+ P P G+ GDA E G
Sbjct: 1355 PAGPAGKPGPDGLRGLPGSVGQQGRPGATGQAGPPGPVGPPGLPGLRGDAGAKGEKG--- 1411
Query: 114 RKDTEAPTFPNPAPLLLPPS---------LPAPK-------------ARGSYPSSGPRSL 151
P L+ PP LP P+ A G GP L
Sbjct: 1412 --------HPGLIGLIGPPGEQGEKGDRGLPGPQGSPGQKGEMGIPGASGPIGPGGPPGL 1463
Query: 152 PNPAGTRRSAVPSWGARGWGG--SEETRWGGDPRSQTPGETAFP 193
P PAG + + GA G GG E+ G PGE P
Sbjct: 1464 PGPAGPKGAK----GATGPGGPKGEKGVQGPPGHPGPPGEVIQP 1503
Score = 32.7 bits (73), Expect = 0.31
Identities = 46/168 (27%), Positives = 57/168 (33%), Gaps = 26/168 (15%)
Query: 17 GLAGQ-GPAHEAGG-------GERALLPGLGRRGPRRIVAAVGGGGRGAPL--------- 59
G AG+ GP E G GE+ L G+ G + G G+ P
Sbjct: 931 GAAGETGPMGERGHPGPPGPPGEQGLPGTAGKEGTKGDPGPPGAPGKDGPAGLRGFPGER 990
Query: 60 -LPCGAGGRALDRLDDPSPPPHLPGQSRPRPQTFPRG-VFPALGDAAQGP-----EDGLA 112
LP AGG L + PS PP G R G + P QGP E G+
Sbjct: 991 GLPGTAGGPGLKGNEGPSGPPGPAGSPGERGAAGSGGPIGPPGRPGPQGPPGAAGEKGVP 1050
Query: 113 RRKDTEAPTFPN--PAPLLLPPSLPAPKARGSYPSSGPRSLPNPAGTR 158
K PT + P+ LP P G G P GT+
Sbjct: 1051 GEKGPIGPTGRDGVQGPVGLPGPAGPPGVAGEDGDKGEVGDPGQKGTK 1098
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 42.0 bits (97), Expect = 5e-04
Identities = 54/179 (30%), Positives = 60/179 (33%), Gaps = 34/179 (18%)
Query: 30 GERALLPGLGRRGPRRI--VAAVGGGGRGAPLLPCGAGGRALDRLDDPSPPPHL------ 81
G R +G +GP + V G G P P GA G R PP L
Sbjct: 261 GPRGEPGAVGPKGPPGVDGVGVPGAAGLPGPQGPSGAKGEPGTR-----GPPGLIGPTGY 315
Query: 82 --PGQSRPRPQTFPRGVFPALGDAAQGPEDGLARRKDTEAPTFPNPAPLLLPPSLPAPKA 139
PG P+ P GV LGD + EDG P P L PP LP
Sbjct: 316 GMPGLPGPKGDRGPAGVPGLLGDRGEPGEDG--------EPGEQGPQGLGGPPGLP---- 363
Query: 140 RGSYPSSGPRSLPNPAGTRRSAVPSW--GARGWGGSEETRWGGDPRSQTPGETAFPAVH 196
GS G R P P G P G RG G G + PGE P H
Sbjct: 364 -GSAGLPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPS----GLAGKPGVPGERGLPGAH 417
Score = 38.5 bits (88), Expect = 0.006
Identities = 59/198 (29%), Positives = 69/198 (34%), Gaps = 36/198 (18%)
Query: 17 GLAGQ-GPAHEAGGGERALLPGLGRRGPRRIVAAVGGGGRGAPLLPCGAGGRALDRLDDP 75
GL GQ GPA G +G+ GP + VG G+ P L G R L P
Sbjct: 106 GLHGQPGPAGPPGFSR------MGKAGPPGLPGKVGPPGQ--PGLRGEPGIRGDQGLRGP 157
Query: 76 SPPPHLPG------------QSRPRPQTF-----PRGVFPALGDAAQGPEDGLARRKDTE 118
PP LPG Q P P F P+G GD ++G+ +
Sbjct: 158 PGPPGLPGPSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPGLPG 217
Query: 119 APT---------FPNPAPLLLPPSLPAPKARGSYPSSGPRSLPNPAGTRRSAVPSWGARG 169
AP P PA L P P A G SGP +P P G AV G G
Sbjct: 218 APGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRG-EPGAVGPKGPPG 276
Query: 170 WGGSEETRWGGDPRSQTP 187
G G P Q P
Sbjct: 277 VDGVGVPGAAGLPGPQGP 294
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 42.0 bits (97), Expect = 5e-04
Identities = 63/256 (24%), Positives = 85/256 (33%), Gaps = 39/256 (15%)
Query: 7 SRGGGWGTIAGLAGQGPAHEAGGGERALLPGLGRRGPRRIVAAVGGGGRGAPLLPCGAGG 66
S G GWG+ P G G+R+ G G R G P P
Sbjct: 303 SGGSGWGS--------PQRNGGSGQRS-----GAHGGRP------GSAHSPPDKPSSPSP 343
Query: 67 RALDRLDDPSPPPHLPGQSRPRPQTFP----RGVFPALGDAAQGPEDGLARRKDTEAPTF 122
R D+ +P P G+ P P++ P RG A G A + RR+ + +
Sbjct: 344 RVRDKAAAAAPTPPARGKESPSPRSAPSSQGRG-GRAAGGAGRRRRRRRRRRRSRSSASA 402
Query: 123 P----NPAPLLLPP---SLPAPKARGSYPSSGPRSLPNPAGTRRSAVPSWGA-RGWGGSE 174
P P PP S +AR S S R P P P G+ RG GG
Sbjct: 403 PRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPG-------PEPGSERGHGGHG 455
Query: 175 ETRWGGDPRSQTPGETAFPAVHSGLCQKEPHRCSIGFGRLKSSCFNVNEILRPRHERPSR 234
+ PR++ + P H E S G S + + R +
Sbjct: 456 KRAKERPPRARPASTSPSPGAHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRSRSAEK 515
Query: 235 RPRCPFYSLSTARKSS 250
RP P S S + S
Sbjct: 516 RPHSPSRSPSPKKPLS 531
>gi|156416026 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 42.0 bits (97), Expect = 5e-04
Identities = 66/257 (25%), Positives = 87/257 (33%), Gaps = 30/257 (11%)
Query: 7 SRGGGWGTIAGL---AGQGPAHEAGG-GERALLPGLGRRGPRRIVAAVGGGGRGAPLLPC 62
+RG G++A L G+GP H A G +A + GGRGA C
Sbjct: 441 ARGRSLGSLASLHPRPGEGPGHSASAAGAQARSTATQEENGLLVGGTRPEGGRGATGKDC 500
Query: 63 GAGGRALDRLDDPSPPPHLPGQSRPRPQTFPRGVFPALGDAAQGPEDGLARRKDTEAPTF 122
G++ HL + RP P + G +R E +
Sbjct: 501 PFCGKSFRSAHHLKV--HLRVHTGERPYKCPHCDYAG---TQSGSLKYHLQRHHREQRSG 555
Query: 123 PNPAPLLLPPSLPAPKARGSYPSSGPRSLPNPA----GTRRSAVPSWGARGWGGSEETRW 178
P P PP P P RGS P SG + P PA G PS GA +
Sbjct: 556 AGPGP---PPEPPPPSQRGSAPQSGAKPSPQPATWVEGASSPRPPSSGAGPGSRRKPASP 612
Query: 179 GGDPRSQTPGET--------AFPAVHSGLCQKEPHRC-----SIGFGRLKSSCFNVNEIL 225
G R+ GE A P +G HRC + G L + V+
Sbjct: 613 GRTLRNGRGGEAEPLDLSLRAGPGGEAG-PGGALHRCLFCPFATGAPELMALHLQVHHSR 671
Query: 226 RPRHERPSRRPRCPFYS 242
R R RP + P Y+
Sbjct: 672 RARGRRPPQADASPPYA 688
>gi|156415998 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 42.0 bits (97), Expect = 5e-04
Identities = 66/257 (25%), Positives = 87/257 (33%), Gaps = 30/257 (11%)
Query: 7 SRGGGWGTIAGL---AGQGPAHEAGG-GERALLPGLGRRGPRRIVAAVGGGGRGAPLLPC 62
+RG G++A L G+GP H A G +A + GGRGA C
Sbjct: 441 ARGRSLGSLASLHPRPGEGPGHSASAAGAQARSTATQEENGLLVGGTRPEGGRGATGKDC 500
Query: 63 GAGGRALDRLDDPSPPPHLPGQSRPRPQTFPRGVFPALGDAAQGPEDGLARRKDTEAPTF 122
G++ HL + RP P + G +R E +
Sbjct: 501 PFCGKSFRSAHHLKV--HLRVHTGERPYKCPHCDYAG---TQSGSLKYHLQRHHREQRSG 555
Query: 123 PNPAPLLLPPSLPAPKARGSYPSSGPRSLPNPA----GTRRSAVPSWGARGWGGSEETRW 178
P P PP P P RGS P SG + P PA G PS GA +
Sbjct: 556 AGPGP---PPEPPPPSQRGSAPQSGAKPSPQPATWVEGASSPRPPSSGAGPGSRRKPASP 612
Query: 179 GGDPRSQTPGET--------AFPAVHSGLCQKEPHRC-----SIGFGRLKSSCFNVNEIL 225
G R+ GE A P +G HRC + G L + V+
Sbjct: 613 GRTLRNGRGGEAEPLDLSLRAGPGGEAG-PGGALHRCLFCPFATGAPELMALHLQVHHSR 671
Query: 226 RPRHERPSRRPRCPFYS 242
R R RP + P Y+
Sbjct: 672 RARGRRPPQADASPPYA 688
>gi|30039694 zinc finger protein 598 [Homo sapiens]
Length = 904
Score = 42.0 bits (97), Expect = 5e-04
Identities = 33/93 (35%), Positives = 40/93 (43%), Gaps = 5/93 (5%)
Query: 75 PSPPPHLPGQSRPRPQTFPRGVFPALGDAA---QGPEDGLARRKDTEAPTFPNPAPLLLP 131
P PP LP P P+ FPALG P G + + T P P P L+P
Sbjct: 647 PKEPPGLPRPLGSFPCPTPQEDFPALGGPCPPRMPPPPGFSAVVLLKG-TPPPPPPGLVP 705
Query: 132 P-SLPAPKARGSYPSSGPRSLPNPAGTRRSAVP 163
P S P P G PS P +P+PA T + P
Sbjct: 706 PISKPPPGFSGLLPSPHPACVPSPATTTTTKAP 738
>gi|156415996 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 42.0 bits (97), Expect = 5e-04
Identities = 66/257 (25%), Positives = 87/257 (33%), Gaps = 30/257 (11%)
Query: 7 SRGGGWGTIAGL---AGQGPAHEAGG-GERALLPGLGRRGPRRIVAAVGGGGRGAPLLPC 62
+RG G++A L G+GP H A G +A + GGRGA C
Sbjct: 441 ARGRSLGSLASLHPRPGEGPGHSASAAGAQARSTATQEENGLLVGGTRPEGGRGATGKDC 500
Query: 63 GAGGRALDRLDDPSPPPHLPGQSRPRPQTFPRGVFPALGDAAQGPEDGLARRKDTEAPTF 122
G++ HL + RP P + G +R E +
Sbjct: 501 PFCGKSFRSAHHLKV--HLRVHTGERPYKCPHCDYAG---TQSGSLKYHLQRHHREQRSG 555
Query: 123 PNPAPLLLPPSLPAPKARGSYPSSGPRSLPNPA----GTRRSAVPSWGARGWGGSEETRW 178
P P PP P P RGS P SG + P PA G PS GA +
Sbjct: 556 AGPGP---PPEPPPPSQRGSAPQSGAKPSPQPATWVEGASSPRPPSSGAGPGSRRKPASP 612
Query: 179 GGDPRSQTPGET--------AFPAVHSGLCQKEPHRC-----SIGFGRLKSSCFNVNEIL 225
G R+ GE A P +G HRC + G L + V+
Sbjct: 613 GRTLRNGRGGEAEPLDLSLRAGPGGEAG-PGGALHRCLFCPFATGAPELMALHLQVHHSR 671
Query: 226 RPRHERPSRRPRCPFYS 242
R R RP + P Y+
Sbjct: 672 RARGRRPPQADASPPYA 688
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 41.6 bits (96), Expect = 7e-04
Identities = 59/195 (30%), Positives = 70/195 (35%), Gaps = 17/195 (8%)
Query: 2 GGQGRSRGGGWGTIAGLAGQGPAHEAGGGERALLPGLGRRGPRRIVAAVGGGGRGAPLLP 61
G GR G+ + G G P E G LG G A G +GAP P
Sbjct: 938 GVPGREGPPGFPGLPGPPGP-PGREGPPGRTGQKGSLGEAG-----APGHKGSKGAPG-P 990
Query: 62 CGAGGRA-LDRLDDPSPPPHLPGQSRPRPQTFPRGVFPALGDAAQGPEDGLARRKDTEAP 120
GA G + L P+ PP PG P P G G GP AR D P
Sbjct: 991 AGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGFDDMEGSG--GPFWSTARSAD--GP 1046
Query: 121 TFPNPAP-LLLPPSLPA-PKARGSYPSSGPRSLPNPAGTRRSAVPSWGARGWGGSEETRW 178
P P L P +P P A+G + G P G A P G +G GS +
Sbjct: 1047 QGPPGLPGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQ-GPKGDRGSRGEK- 1104
Query: 179 GGDPRSQTPGETAFP 193
GDP G+ P
Sbjct: 1105 -GDPGKDGVGQPGLP 1118
Score = 41.2 bits (95), Expect = 9e-04
Identities = 53/196 (27%), Positives = 62/196 (31%), Gaps = 34/196 (17%)
Query: 10 GGWGTIAGLAGQGPAHEAGGGERALLPGLGRRGPRRIVAAVGGGGRGAPLLPCGAGGRAL 69
GG GL GQ GE + GR GP G G P+ P G G AL
Sbjct: 745 GGRVKEGGLKGQK-------GEPGVPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPAL 797
Query: 70 DRLDDPSPPPHLPGQSRPRPQTFPRGVFPALGDAAQGPEDGLARRKDTEAPTFPNPAPLL 129
+ P PP PG+ G G+ EDG + DT FP
Sbjct: 798 QTVPGPQGPPGPPGRD---------GTPGRDGEPGDPGEDG--KPGDTGPQGFPG----- 841
Query: 130 LPPSLPAPKARGSYPSSGPRSLPNPAGTRRSAVPSW----------GARGWGGSEETRWG 179
P PK P G R P P G PS+ G+GG E G
Sbjct: 842 -TPGDVGPKGDKGDPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRG 900
Query: 180 GDPRSQTPGETAFPAV 195
PG P +
Sbjct: 901 PRGFPGPPGPPGVPGL 916
Score = 33.9 bits (76), Expect = 0.14
Identities = 35/129 (27%), Positives = 50/129 (38%), Gaps = 20/129 (15%)
Query: 54 GRGAPLLPCGAGGRALDRLDDPSPPPHLPGQSRPRPQTFPRGVFPALGDAAQGPEDGLAR 113
G GA +L G R+ +L + + P ++ P G G ++ E+G
Sbjct: 109 GVGAEILNVAKGIRSFVQLWNDTVPTESLARAETLVLETPVGPLALAGPSSTPQENGTTL 168
Query: 114 RKDTEAPTFPN---------PAPLLLPPSLPAPKARGSYPSSGPRSLPNPAGTRRS---- 160
P+ P PAP PPSL P A P +GP S+P P+ R S
Sbjct: 169 WPSRGIPSSPGAHTTEAGTLPAPTPSPPSLGRPWA----PLTGP-SVPPPSSGRASLSSL 223
Query: 161 --AVPSWGA 167
P WG+
Sbjct: 224 LGGAPPWGS 232
Score = 33.9 bits (76), Expect = 0.14
Identities = 71/267 (26%), Positives = 91/267 (34%), Gaps = 56/267 (20%)
Query: 2 GGQGRSRGGGWGTIAGLAGQ-GPAHEAG--GGERALLPGL--------GRRGPRRIVAAV 50
G +G G +GLAG GPA G G PGL G GP A
Sbjct: 983 GSKGAPGPAGARGESGLAGAPGPAGPPGPPGPPGPPGPGLPAGFDDMEGSGGPFWSTARS 1042
Query: 51 GGGGRGAPLLPCGAGGRALDRL---------DDPSPPPHLPGQSRPRPQTFPRGVFPALG 101
G +G P LP G + L D P LPG+ P+G + G
Sbjct: 1043 ADGPQGPPGLPGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGIAGPQGPKGDRGSRG 1102
Query: 102 DAAQGPEDGLARRKDTEAPTFPNPAPLLLPP-----SLPAPKAR-------------GSY 143
+ +DG+ + P P P + S+P P+ R G+
Sbjct: 1103 EKGDPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPEGRPGFAGFPGPAGPKGNL 1162
Query: 144 PSSGPRSLPNPAGTRRSA----VPSWGARG---WGGSEETRWGGDP----RSQTPGETAF 192
S G R P P G + P GA G G E + G P R GE F
Sbjct: 1163 GSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKGEIGF 1222
Query: 193 PA-----VHSGLC--QKEPHRCSIGFG 212
P +GL + EP S+GFG
Sbjct: 1223 PGRPGRPGMNGLKGEKGEPGDASLGFG 1249
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.139 0.453
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,221,542
Number of Sequences: 37866
Number of extensions: 1005906
Number of successful extensions: 7664
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 1037
Number of HSP's that attempted gapping in prelim test: 5464
Number of HSP's gapped (non-prelim): 2687
length of query: 252
length of database: 18,247,518
effective HSP length: 100
effective length of query: 152
effective length of database: 14,460,918
effective search space: 2198059536
effective search space used: 2198059536
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.