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Search of human proteins with 239752979
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752979 PREDICTED: hypothetical protein XP_002345320 [Homo
sapiens]
(243 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752979 PREDICTED: hypothetical protein XP_002345320 [Homo ... 514 e-146
gi|239747560 PREDICTED: hypothetical protein XP_002347649 [Homo ... 285 2e-77
gi|239741434 PREDICTED: hypothetical protein XP_002342199 [Homo ... 285 2e-77
gi|169211686 PREDICTED: hypothetical protein [Homo sapiens] 93 2e-19
gi|169211670 PREDICTED: hypothetical protein [Homo sapiens] 93 2e-19
gi|169210802 PREDICTED: hypothetical protein [Homo sapiens] 93 2e-19
gi|4504487 histidine rich calcium binding protein precursor [Hom... 44 2e-04
gi|239755402 PREDICTED: hypothetical protein [Homo sapiens] 35 0.059
gi|239754474 PREDICTED: similar to mucin [Homo sapiens] 35 0.059
gi|239749910 PREDICTED: hypothetical protein XP_002347211 [Homo ... 35 0.059
gi|239744211 PREDICTED: hypothetical protein XP_002343075 [Homo ... 35 0.059
gi|39545575 hypothetical protein LOC55924 isoform 2 [Homo sapiens] 35 0.059
gi|9506861 hypothetical protein LOC55924 isoform 1 [Homo sapiens] 35 0.059
gi|112421134 hypothetical protein LOC23742 [Homo sapiens] 35 0.059
gi|148833508 notch1 preproprotein [Homo sapiens] 35 0.077
gi|221316599 chromogranin B precursor [Homo sapiens] 35 0.077
gi|169234787 hypothetical protein LOC55683 isoform a [Homo sapiens] 34 0.10
gi|21361734 hypothetical protein LOC55683 isoform b [Homo sapiens] 34 0.10
gi|169207312 PREDICTED: hypothetical protein [Homo sapiens] 34 0.13
gi|239750650 PREDICTED: hypothetical protein [Homo sapiens] 34 0.13
gi|89037350 PREDICTED: hypothetical protein [Homo sapiens] 34 0.13
gi|239744552 PREDICTED: hypothetical protein [Homo sapiens] 34 0.13
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 33 0.22
gi|55741473 HECT, C2 and WW domain containing E3 ubiquitin prote... 33 0.29
gi|151301154 mucin 6, gastric [Homo sapiens] 32 0.38
gi|116256481 TNFAIP3 interacting protein 1 [Homo sapiens] 32 0.65
gi|4504489 histidine-rich glycoprotein precursor [Homo sapiens] 32 0.65
gi|223278403 glutamate receptor, ionotropic, delta 2 (Grid2) int... 31 1.1
gi|239746322 PREDICTED: hypothetical protein XP_002343729 [Homo ... 30 1.5
gi|10880979 lymphocyte-specific protein 1 isoform 1 [Homo sapiens] 30 1.5
>gi|239752979 PREDICTED: hypothetical protein XP_002345320 [Homo
sapiens]
Length = 243
Score = 514 bits (1325), Expect = e-146
Identities = 243/243 (100%), Positives = 243/243 (100%)
Query: 1 MPRHSLALGGPRHCLVMRLWPGRELQHGLDTHTEDGTSRPPIPVLPGSSTSTSTVTSKEV 60
MPRHSLALGGPRHCLVMRLWPGRELQHGLDTHTEDGTSRPPIPVLPGSSTSTSTVTSKEV
Sbjct: 1 MPRHSLALGGPRHCLVMRLWPGRELQHGLDTHTEDGTSRPPIPVLPGSSTSTSTVTSKEV 60
Query: 61 VLQQNSNMRSLTGSLRFPGCKSFSSEVMGTGKFTVQSSSHPSPSCFSGPAERSTERWPSS 120
VLQQNSNMRSLTGSLRFPGCKSFSSEVMGTGKFTVQSSSHPSPSCFSGPAERSTERWPSS
Sbjct: 61 VLQQNSNMRSLTGSLRFPGCKSFSSEVMGTGKFTVQSSSHPSPSCFSGPAERSTERWPSS 120
Query: 121 QPSCGAASTFGAVDSPERDLDPEVAVHSNCQQGQDGALGEDEDRTGNHEAGVEVGLWPNV 180
QPSCGAASTFGAVDSPERDLDPEVAVHSNCQQGQDGALGEDEDRTGNHEAGVEVGLWPNV
Sbjct: 121 QPSCGAASTFGAVDSPERDLDPEVAVHSNCQQGQDGALGEDEDRTGNHEAGVEVGLWPNV 180
Query: 181 DEDGEGDDQGTHGHISHRQRHDEAEGGIPQRLVHLHRPDHQHVPGHRDQGDEHLDADVGG 240
DEDGEGDDQGTHGHISHRQRHDEAEGGIPQRLVHLHRPDHQHVPGHRDQGDEHLDADVGG
Sbjct: 181 DEDGEGDDQGTHGHISHRQRHDEAEGGIPQRLVHLHRPDHQHVPGHRDQGDEHLDADVGG 240
Query: 241 LES 243
LES
Sbjct: 241 LES 243
>gi|239747560 PREDICTED: hypothetical protein XP_002347649 [Homo
sapiens]
Length = 284
Score = 285 bits (730), Expect = 2e-77
Identities = 133/144 (92%), Positives = 135/144 (93%), Gaps = 1/144 (0%)
Query: 101 PSPSCFSGPAERSTE-RWPSSQPSCGAASTFGAVDSPERDLDPEVAVHSNCQQGQDGALG 159
P+ +C P R T RWPSSQPSCGAASTFGAVDSPERDLDPEVAVHSNCQQGQDGALG
Sbjct: 141 PADTCIRVPQTRLTSARWPSSQPSCGAASTFGAVDSPERDLDPEVAVHSNCQQGQDGALG 200
Query: 160 EDEDRTGNHEAGVEVGLWPNVDEDGEGDDQGTHGHISHRQRHDEAEGGIPQRLVHLHRPD 219
EDEDRTGNHEAGVEVGLWPNVDEDGEGDDQGTHGHISHRQRHDEAEGGIPQRLVHLHRPD
Sbjct: 201 EDEDRTGNHEAGVEVGLWPNVDEDGEGDDQGTHGHISHRQRHDEAEGGIPQRLVHLHRPD 260
Query: 220 HQHVPGHRDQGDEHLDADVGGLES 243
HQHVPGHRDQGDEHLDADVGGLES
Sbjct: 261 HQHVPGHRDQGDEHLDADVGGLES 284
>gi|239741434 PREDICTED: hypothetical protein XP_002342199 [Homo
sapiens]
Length = 284
Score = 285 bits (730), Expect = 2e-77
Identities = 133/144 (92%), Positives = 135/144 (93%), Gaps = 1/144 (0%)
Query: 101 PSPSCFSGPAERSTE-RWPSSQPSCGAASTFGAVDSPERDLDPEVAVHSNCQQGQDGALG 159
P+ +C P R T RWPSSQPSCGAASTFGAVDSPERDLDPEVAVHSNCQQGQDGALG
Sbjct: 141 PADTCIRVPQTRLTSARWPSSQPSCGAASTFGAVDSPERDLDPEVAVHSNCQQGQDGALG 200
Query: 160 EDEDRTGNHEAGVEVGLWPNVDEDGEGDDQGTHGHISHRQRHDEAEGGIPQRLVHLHRPD 219
EDEDRTGNHEAGVEVGLWPNVDEDGEGDDQGTHGHISHRQRHDEAEGGIPQRLVHLHRPD
Sbjct: 201 EDEDRTGNHEAGVEVGLWPNVDEDGEGDDQGTHGHISHRQRHDEAEGGIPQRLVHLHRPD 260
Query: 220 HQHVPGHRDQGDEHLDADVGGLES 243
HQHVPGHRDQGDEHLDADVGGLES
Sbjct: 261 HQHVPGHRDQGDEHLDADVGGLES 284
>gi|169211686 PREDICTED: hypothetical protein [Homo sapiens]
Length = 252
Score = 92.8 bits (229), Expect = 2e-19
Identities = 56/152 (36%), Positives = 74/152 (48%), Gaps = 8/152 (5%)
Query: 87 VMGTGKFTVQSSSHPSPSCFSGPAERSTERWPSSQPSCGAASTFGAVDSPERDLDPEVAV 146
V+G FTV P +S + + S+ PSC + PERD D +V+V
Sbjct: 79 VVGGTVFTVP------PQEWSQSDAKGKDPEDSNDPSCSGPRDQTFI--PERDTDGQVSV 130
Query: 147 HSNCQQGQDGALGEDEDRTGNHEAGVEVGLWPNVDEDGEGDDQGTHGHISHRQRHDEAEG 206
+ Q+ +DGAL E + G EA VEV D DG+GD + HGH+ Q H E G
Sbjct: 131 DCHGQKAEDGALREHQHEAGEEEAAVEVSAEAQADGDGKGDGEEPHGHVGRSQGHQEVVG 190
Query: 207 GIPQRLVHLHRPDHQHVPGHRDQGDEHLDADV 238
G Q + HR HQHV HR +GD+ L V
Sbjct: 191 GRLQSVRRAHRGAHQHVARHRKRGDDQLQRHV 222
>gi|169211670 PREDICTED: hypothetical protein [Homo sapiens]
Length = 252
Score = 92.8 bits (229), Expect = 2e-19
Identities = 56/152 (36%), Positives = 74/152 (48%), Gaps = 8/152 (5%)
Query: 87 VMGTGKFTVQSSSHPSPSCFSGPAERSTERWPSSQPSCGAASTFGAVDSPERDLDPEVAV 146
V+G FTV P +S + + S+ PSC + PERD D +V+V
Sbjct: 79 VVGGTVFTVP------PQEWSQSDAKGKDPEDSNDPSCSGPRDQTFI--PERDTDGQVSV 130
Query: 147 HSNCQQGQDGALGEDEDRTGNHEAGVEVGLWPNVDEDGEGDDQGTHGHISHRQRHDEAEG 206
+ Q+ +DGAL E + G EA VEV D DG+GD + HGH+ Q H E G
Sbjct: 131 DCHGQKAEDGALREHQHEAGEEEAAVEVSAEAQADGDGKGDGEEPHGHVGRSQGHQEVVG 190
Query: 207 GIPQRLVHLHRPDHQHVPGHRDQGDEHLDADV 238
G Q + HR HQHV HR +GD+ L V
Sbjct: 191 GRLQSVRRAHRGAHQHVARHRKRGDDQLQRHV 222
>gi|169210802 PREDICTED: hypothetical protein [Homo sapiens]
Length = 252
Score = 92.8 bits (229), Expect = 2e-19
Identities = 56/152 (36%), Positives = 74/152 (48%), Gaps = 8/152 (5%)
Query: 87 VMGTGKFTVQSSSHPSPSCFSGPAERSTERWPSSQPSCGAASTFGAVDSPERDLDPEVAV 146
V+G FTV P +S + + S+ PSC + PERD D +V+V
Sbjct: 79 VVGGTVFTVP------PQEWSQSDAKGKDPEDSNDPSCSGPRDQTFI--PERDTDGQVSV 130
Query: 147 HSNCQQGQDGALGEDEDRTGNHEAGVEVGLWPNVDEDGEGDDQGTHGHISHRQRHDEAEG 206
+ Q+ +DGAL E + G EA VEV D DG+GD + HGH+ Q H E G
Sbjct: 131 DCHGQKAEDGALREHQHEAGEEEAAVEVSAEAQADGDGKGDGEEPHGHVGRSQGHQEVVG 190
Query: 207 GIPQRLVHLHRPDHQHVPGHRDQGDEHLDADV 238
G Q + HR HQHV HR +GD+ L V
Sbjct: 191 GRLQSVRRAHRGAHQHVARHRKRGDDQLQRHV 222
>gi|4504487 histidine rich calcium binding protein precursor [Homo
sapiens]
Length = 699
Score = 43.5 bits (101), Expect = 2e-04
Identities = 31/102 (30%), Positives = 48/102 (47%), Gaps = 4/102 (3%)
Query: 134 DSPERDLDPEVAVHSNCQQGQDGALGEDEDRT-GNHEAGVEVGLWPNVDEDGEGDDQGT- 191
D + D D + + Q + EDED + G+H + ++D + DD T
Sbjct: 254 DDDDDDDDVSIEYRHQAHRHQGHGIEEDEDVSDGHHHRDPSHRHRSHEEDDNDDDDVSTE 313
Query: 192 HGHISHR-QRHDEAEGGIPQRLVHLHRPDHQHVPGHRDQGDE 232
+GH +HR Q H + E H H PDH+H GHRD+ ++
Sbjct: 314 YGHQAHRHQDHRKEEVEAVSGEHHHHVPDHRH-QGHRDEEED 354
Score = 34.7 bits (78), Expect = 0.077
Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 13/92 (14%)
Query: 147 HSNCQQGQDGALGEDEDRTGNHEAGVEVGLWPNVDEDGEGDDQGTHGHISHRQR-HDEAE 205
H + G G GED++ E +E+ E + +GH +HR R H E
Sbjct: 175 HHILRHGHRGHDGEDDEGEEEEE-----------EEEEEEEASTEYGHQAHRHRGHGSEE 223
Query: 206 GGIPQRLVHLHRPDHQHVPGHRDQGDEHLDAD 237
H H P H+H GH + D+ D D
Sbjct: 224 DEDVSDGHHHHGPSHRH-QGHEEDDDDDDDDD 254
Score = 29.3 bits (64), Expect = 3.2
Identities = 38/129 (29%), Positives = 48/129 (37%), Gaps = 10/129 (7%)
Query: 113 STERWPSSQPSCGAASTFGAVDSPERDLDPEVAV-HSNCQQGQDGALGEDEDRTGNHEAG 171
STERW G VD E + + V H G ++ED ++
Sbjct: 358 STERWHQGPQHVH----HGLVDEEEEEEEITVQFGHYVASHQPRGHKSDEEDFQDEYKTE 413
Query: 172 VEVGLWPNV--DEDGEGDDQGTHGHISHRQRHDEAEGGIPQRLVHLHRPDHQHVPGHRDQ 229
V V +ED E + H SHRQ H + E G QR + H H PGH
Sbjct: 414 VPHHHHHRVPREEDEEVSAELGHQAPSHRQSHQDEETGHGQR-GSIKEMSH-HPPGHTVV 471
Query: 230 GD-EHLDAD 237
D HL D
Sbjct: 472 KDRSHLRKD 480
>gi|239755402 PREDICTED: hypothetical protein [Homo sapiens]
Length = 321
Score = 35.0 bits (79), Expect = 0.059
Identities = 37/125 (29%), Positives = 47/125 (37%), Gaps = 14/125 (11%)
Query: 118 PSSQPSCGAASTFGAVDSPERDLDPEVAVHSNCQQGQ------DGALGEDEDRTGNHEAG 171
P Q S GA + A P+R +VAVH C G+ DG ++ED+ A
Sbjct: 152 PDGQHSVGAEAQRDA--PPQRVHQHDVAVH--CDGGEREHRHIDGDRLQEEDQVAQ-AAA 206
Query: 172 VEVGLWPNVDEDGEGDDQGTHGHISHRQRHDEAEGGIPQRLVHLHRPDHQHVPGHRDQGD 231
W E G H H+ Q DE + Q H DHQH Q
Sbjct: 207 EHPAAWLEGIGQRERHAGGAHEHVGQGQVADEEVRHVVQPA---HPRDHQHQQAVAHQPH 263
Query: 232 EHLDA 236
+H DA
Sbjct: 264 DHHDA 268
>gi|239754474 PREDICTED: similar to mucin [Homo sapiens]
Length = 417
Score = 35.0 bits (79), Expect = 0.059
Identities = 28/114 (24%), Positives = 43/114 (37%), Gaps = 8/114 (7%)
Query: 26 QHGLDTHTEDGTSRPPIPVLPGSSTSTSTVTSKEVVLQQNSNMRSLTGSLRFPGCKSFSS 85
Q G E+ + P + TS+ T K LQ TG R GC S S+
Sbjct: 291 QQGAQDREEEAAAAP-------APTSSGHRTEKRKRLQLQCQPAGGTGQRRGSGCSS-SA 342
Query: 86 EVMGTGKFTVQSSSHPSPSCFSGPAERSTERWPSSQPSCGAASTFGAVDSPERD 139
G ++++ P P+ E+ + P +P+ G G+ SP D
Sbjct: 343 NQQGAQDREEEAAAAPVPTSSGHRTEKRKPQQPQRRPAAGTGQRRGSGSSPSAD 396
Score = 28.1 bits (61), Expect = 7.2
Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 9/119 (7%)
Query: 21 PGRELQHGLDTHTEDGTSRPPIPVLPGSSTSTSTVTSKEVVLQQNSNMRSLTGSLRFPGC 80
P + Q D E+ + P+P TS T K Q TG R G
Sbjct: 128 PSADQQRAQDR--EEEAAAAPVP------TSRGHRTEKRKRQQPQRRPAGGTGQRRGSG- 178
Query: 81 KSFSSEVMGTGKFTVQSSSHPSPSCFSGPAERSTERWPSSQPSCGAASTFGAVDSPERD 139
S S++ G ++++ P+P+ E+ + P +P+ G G+ SP D
Sbjct: 179 SSPSADQQGAQDREEEAAAAPAPTSRGHRTEKRKPQQPQCRPAGGTGQRRGSRSSPSAD 237
>gi|239749910 PREDICTED: hypothetical protein XP_002347211 [Homo
sapiens]
Length = 321
Score = 35.0 bits (79), Expect = 0.059
Identities = 37/125 (29%), Positives = 47/125 (37%), Gaps = 14/125 (11%)
Query: 118 PSSQPSCGAASTFGAVDSPERDLDPEVAVHSNCQQGQ------DGALGEDEDRTGNHEAG 171
P Q S GA + A P+R +VAVH C G+ DG ++ED+ A
Sbjct: 152 PDGQHSVGAEAQRDA--PPQRVHQHDVAVH--CDGGEREHRHIDGDRLQEEDQVAQ-AAA 206
Query: 172 VEVGLWPNVDEDGEGDDQGTHGHISHRQRHDEAEGGIPQRLVHLHRPDHQHVPGHRDQGD 231
W E G H H+ Q DE + Q H DHQH Q
Sbjct: 207 EHPAAWLEGIGQRERHAGGAHEHVGQGQVADEEVRHVVQPA---HPRDHQHQQAVAHQPH 263
Query: 232 EHLDA 236
+H DA
Sbjct: 264 DHHDA 268
>gi|239744211 PREDICTED: hypothetical protein XP_002343075 [Homo
sapiens]
Length = 321
Score = 35.0 bits (79), Expect = 0.059
Identities = 37/125 (29%), Positives = 47/125 (37%), Gaps = 14/125 (11%)
Query: 118 PSSQPSCGAASTFGAVDSPERDLDPEVAVHSNCQQGQ------DGALGEDEDRTGNHEAG 171
P Q S GA + A P+R +VAVH C G+ DG ++ED+ A
Sbjct: 152 PDGQHSVGAEAQRDA--PPQRVHQHDVAVH--CDGGEREHRHIDGDRLQEEDQVAQ-AAA 206
Query: 172 VEVGLWPNVDEDGEGDDQGTHGHISHRQRHDEAEGGIPQRLVHLHRPDHQHVPGHRDQGD 231
W E G H H+ Q DE + Q H DHQH Q
Sbjct: 207 EHPAAWLEGIGQRERHAGGAHEHVGQGQVADEEVRHVVQPA---HPRDHQHQQAVAHQPH 263
Query: 232 EHLDA 236
+H DA
Sbjct: 264 DHHDA 268
>gi|39545575 hypothetical protein LOC55924 isoform 2 [Homo sapiens]
Length = 282
Score = 35.0 bits (79), Expect = 0.059
Identities = 41/130 (31%), Positives = 56/130 (43%), Gaps = 22/130 (16%)
Query: 100 HPSPSCFSGPAERSTERWPSSQPSCGAASTFGAVDSP-ERDLD--PEVAVHSNC-QQGQD 155
HP GPA R T PSSQPS G+++ F + S RDL P H +C QQG +
Sbjct: 61 HPCWEGGRGPA-RPTVCSPSSQPSLGSSTKFPSHRSVCGRDLAPLPRTQPHQSCAQQGPE 119
Query: 156 GALGEDEDRT-------------GNHEAGVEVGLWPNVDEDGEGDDQGTHGHISHRQRHD 202
+D T G++ VG W ++ E +G ++G G R
Sbjct: 120 RVEPDDWTSTLMSRGRNRQPLVLGDNVFADLVGNWLDLPELEKGGEKGETG----GAREP 175
Query: 203 EAEGGIPQRL 212
+ E G PQ L
Sbjct: 176 KGEKGQPQEL 185
>gi|9506861 hypothetical protein LOC55924 isoform 1 [Homo sapiens]
Length = 297
Score = 35.0 bits (79), Expect = 0.059
Identities = 41/130 (31%), Positives = 56/130 (43%), Gaps = 22/130 (16%)
Query: 100 HPSPSCFSGPAERSTERWPSSQPSCGAASTFGAVDSP-ERDLD--PEVAVHSNC-QQGQD 155
HP GPA R T PSSQPS G+++ F + S RDL P H +C QQG +
Sbjct: 76 HPCWEGGRGPA-RPTVCSPSSQPSLGSSTKFPSHRSVCGRDLAPLPRTQPHQSCAQQGPE 134
Query: 156 GALGEDEDRT-------------GNHEAGVEVGLWPNVDEDGEGDDQGTHGHISHRQRHD 202
+D T G++ VG W ++ E +G ++G G R
Sbjct: 135 RVEPDDWTSTLMSRGRNRQPLVLGDNVFADLVGNWLDLPELEKGGEKGETG----GAREP 190
Query: 203 EAEGGIPQRL 212
+ E G PQ L
Sbjct: 191 KGEKGQPQEL 200
>gi|112421134 hypothetical protein LOC23742 [Homo sapiens]
Length = 1156
Score = 35.0 bits (79), Expect = 0.059
Identities = 34/113 (30%), Positives = 44/113 (38%), Gaps = 17/113 (15%)
Query: 34 EDGTSRPPIPVLPGSSTSTSTVTSKEVVLQQNSNMRSLTGSLRFPGCKSFSSEVMGTGKF 93
ED R P+ SSTS S T +V ++ R G L FS M
Sbjct: 172 EDDEKRTPLSSGEASSTSRSQGTQGDV-----ASFRCSPGPLEGNVYHKFSENSMSE--- 223
Query: 94 TVQSSSHPSPSCFSGPAERSTERWPSSQPSCGAASTFGAVDSPERDLDPEVAV 146
++ + P+ SC GPA PS+ G A G D P+ PE AV
Sbjct: 224 --KAQASPASSCLEGPA------MPSTHSQAGCARHLGKPD-PDATAPPEPAV 267
>gi|148833508 notch1 preproprotein [Homo sapiens]
Length = 2555
Score = 34.7 bits (78), Expect = 0.077
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 78 PGCKSFSSEVMGTGKFTVQSSSHPSPSCFSGPAERSTERWPSSQPSCGAASTFGAVDSPE 137
P S+SS V T +Q HP F P+ S ++W SS P + V SP
Sbjct: 2485 PSQHSYSSPVDNTPSHQLQVPEHP----FLTPSPESPDQWSSSSPHSNVSDWSEGVSSPP 2540
Query: 138 RDLDPEVA 145
+ ++A
Sbjct: 2541 TSMQSQIA 2548
>gi|221316599 chromogranin B precursor [Homo sapiens]
Length = 677
Score = 34.7 bits (78), Expect = 0.077
Identities = 36/170 (21%), Positives = 61/170 (35%), Gaps = 25/170 (14%)
Query: 37 TSRPPIPVLPGSSTSTSTVTSKEVVLQQNSNMRSLTGSLRFPGCKSFSSEVMGTGKFTVQ 96
+S PPI TS K+ +N N + LR P S + E G+
Sbjct: 48 SSAPPITPECRQVLKTSRKDVKDKETTENENTKFEVRLLRDPADASEAHESSSRGE---- 103
Query: 97 SSSHPSPSCFSGPAERSTERWPSSQPSCGAASTFGAVDSPERDLDPEVAVHSNCQQGQDG 156
+ P GP + TE+W G S ER +P+ +++ + Q +
Sbjct: 104 -AGAPGEEDIQGPTKADTEKWAE-----------GGGHSRERADEPQWSLYPSDSQVSEE 151
Query: 157 ALGEDEDRTGNHEAGVEVGLWPNVDEDGEGDDQGTHGHISHRQRHDEAEG 206
+++ + +E+GE +G G S ++H E G
Sbjct: 152 VKTRHSEKSQRED---------EEEEEGENYQKGERGEDSSEEKHLEEPG 192
>gi|169234787 hypothetical protein LOC55683 isoform a [Homo sapiens]
Length = 878
Score = 34.3 bits (77), Expect = 0.10
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 20/106 (18%)
Query: 33 TEDGTSRPPIPVLPGSSTSTSTVTSKEVVLQQNSNMRSLTGSLRFPGCKSFSSEVMGTGK 92
+E G S P+P + SST+ S + + + L S SL PG S SS + G
Sbjct: 677 SEGGVSASPVPSVVSSSTAPSALHTLQSRLVATSPGSSL------PGATSASSLLQGL-S 729
Query: 93 FTVQSSS--------HPSPSCFSGPAERSTE-RWPSSQPSCGAAST 129
F++Q S +PSP GPA ++T + P+ S GA +T
Sbjct: 730 FSLQDISSKTSGLPANPSP----GPAPQATSVKLPTPMQSLGAITT 771
>gi|21361734 hypothetical protein LOC55683 isoform b [Homo sapiens]
Length = 791
Score = 34.3 bits (77), Expect = 0.10
Identities = 34/106 (32%), Positives = 50/106 (47%), Gaps = 20/106 (18%)
Query: 33 TEDGTSRPPIPVLPGSSTSTSTVTSKEVVLQQNSNMRSLTGSLRFPGCKSFSSEVMGTGK 92
+E G S P+P + SST+ S + + + L S SL PG S SS + G
Sbjct: 590 SEGGVSASPVPSVVSSSTAPSALHTLQSRLVATSPGSSL------PGATSASSLLQGL-S 642
Query: 93 FTVQSSS--------HPSPSCFSGPAERSTE-RWPSSQPSCGAAST 129
F++Q S +PSP GPA ++T + P+ S GA +T
Sbjct: 643 FSLQDISSKTSGLPANPSP----GPAPQATSVKLPTPMQSLGAITT 684
>gi|169207312 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 33.9 bits (76), Expect = 0.13
Identities = 31/101 (30%), Positives = 38/101 (37%), Gaps = 7/101 (6%)
Query: 39 RPPIPVLPGSSTSTSTVTSKEVVLQQNSNMRSLTGSLRFPGCKSFSSEVMGTGKFTVQSS 98
RP +P GSS S T E + T + P SF SEV T SS
Sbjct: 209 RPRVPFCRGSS-GLSVPTPPE---HAGGRRKKFTRTRPLPRTSSFLSEVPSTRPLCATSS 264
Query: 99 SHPSPSCFSGPAERSTERWPSSQPSCGAASTFGAVDSPERD 139
SH +P F R+ P P+CG G + P D
Sbjct: 265 SHSAPLPFFWSPLRNPS--PRPAPACGEL-RLGRLSPPRAD 302
>gi|239750650 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 33.9 bits (76), Expect = 0.13
Identities = 31/101 (30%), Positives = 38/101 (37%), Gaps = 7/101 (6%)
Query: 39 RPPIPVLPGSSTSTSTVTSKEVVLQQNSNMRSLTGSLRFPGCKSFSSEVMGTGKFTVQSS 98
RP +P GSS S T E + T + P SF SEV T SS
Sbjct: 209 RPRVPFCRGSS-GLSVPTPPE---HAGGRRKKFTRTRPLPRTSSFLSEVPSTRPLCATSS 264
Query: 99 SHPSPSCFSGPAERSTERWPSSQPSCGAASTFGAVDSPERD 139
SH +P F R+ P P+CG G + P D
Sbjct: 265 SHSAPLPFFWSPLRNPS--PRPAPACGEL-RLGRLSPPRAD 302
>gi|89037350 PREDICTED: hypothetical protein [Homo sapiens]
Length = 414
Score = 33.9 bits (76), Expect = 0.13
Identities = 31/101 (30%), Positives = 38/101 (37%), Gaps = 7/101 (6%)
Query: 39 RPPIPVLPGSSTSTSTVTSKEVVLQQNSNMRSLTGSLRFPGCKSFSSEVMGTGKFTVQSS 98
RP +P GSS S T E + T + P SF SEV T SS
Sbjct: 209 RPRVPFCRGSS-GLSVPTPPE---HAGGRRKKFTRTRPLPRTSSFLSEVPSTRPLCATSS 264
Query: 99 SHPSPSCFSGPAERSTERWPSSQPSCGAASTFGAVDSPERD 139
SH +P F R+ P P+CG G + P D
Sbjct: 265 SHSAPLPFFWSPLRNPS--PRPAPACGEL-RLGRLSPPRAD 302
>gi|239744552 PREDICTED: hypothetical protein [Homo sapiens]
Length = 221
Score = 33.9 bits (76), Expect = 0.13
Identities = 37/123 (30%), Positives = 43/123 (34%), Gaps = 33/123 (26%)
Query: 110 AERSTERWPSSQPSCGAASTFGAVDSPER--------------------DLDPE-----V 144
AER + PSS S G A GA+ SP R D+ PE +
Sbjct: 107 AERPLAQAPSSSASVGRAP--GAMASPSRSSEATGKPRGRDGRPRREEDDVPPEEKRLRL 164
Query: 145 AVHSNCQQGQDGALGEDEDRTGNHEAGVEVGLWPNVDEDGEGDDQGTHGHISHRQRHDEA 204
+ Q QDG GED R G E G + G DG G G R R D
Sbjct: 165 LLEGGSAQPQDGEDGEDAPRPGRVETGTQTG------GDGRGVSDAGAGVRGCRVRGDAG 218
Query: 205 EGG 207
G
Sbjct: 219 NEG 221
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 33.1 bits (74), Expect = 0.22
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 162 EDRTGNHEAGVEVGLWPNVDEDGEGDDQGTHGHISHRQRHDEAEGGIPQRLVHLHRPDHQ 221
E+R G E G E G + GEG+++ T G ++ E EGG + + +
Sbjct: 778 EERAGKEEKGEEEG------DQGEGEEEETEGRGEEKEEGGEVEGGEVEEGKGEREEEEE 831
Query: 222 HVPGHRDQGD 231
G ++G+
Sbjct: 832 EGEGEEEEGE 841
Score = 30.8 bits (68), Expect = 1.1
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 159 GEDEDRTGNHEAGVEVGLWPNVDEDGEGDDQGTHGHISHRQRHDEAEG 206
GE+E+ G E G G E+GEG+++G G + E EG
Sbjct: 842 GEEEEGEGEEEEG--EGKGEEEGEEGEGEEEGEEGEGEGEEEEGEGEG 887
Score = 30.0 bits (66), Expect = 1.9
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 152 QGQDGALGEDEDRTGNHEAGVEVGLWPNVDEDGEG--DDQGTHGHISHRQRHDEAEG 206
+G++ GE E+ G E G E G +E+GEG +++G G + E EG
Sbjct: 886 EGEEEGEGEGEEEEGEGE-GEEEGEGEGEEEEGEGKGEEEGEEGEGEGEEEEGEGEG 941
Score = 30.0 bits (66), Expect = 1.9
Identities = 17/54 (31%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Query: 159 GEDEDRTGNHEAGVEVGLWPNVDEDG------EGDDQGTHGHISHRQRHDEAEG 206
GE E G E E G W +E+G EG+ +G G + E EG
Sbjct: 937 GEGEGEDGEGEGEEEEGEWEGEEEEGEGEGEEEGEGEGEEGEGEGEEEEGEGEG 990
>gi|55741473 HECT, C2 and WW domain containing E3 ubiquitin protein
ligase 2 [Homo sapiens]
Length = 1572
Score = 32.7 bits (73), Expect = 0.29
Identities = 39/144 (27%), Positives = 56/144 (38%), Gaps = 20/144 (13%)
Query: 48 SSTSTSTVTSKEVVLQQNSNMRSLTGSLRFPGCKSFSSEVMGTGKFTVQSSSHPSPSCFS 107
SS + S T V + S++ S RFP +FSS+ G + +S S
Sbjct: 643 SSCNESVTTQLSSVDTRCSSLESA----RFPETPAFSSQEEEDGACAAEPTS-------S 691
Query: 108 GPAERSTERWPSSQPSCGAASTFGAVDSPERDLDPEVAVHSNCQQGQDGALGEDEDRTGN 167
GPAE SQ S A + V P + + A + ++ LGE R G+
Sbjct: 692 GPAE-------GSQESVCTAGSLPVVQVPSGEDEGPGAESATVPDQEE--LGEVWQRRGS 742
Query: 168 HEAGVEVGLWPNVDEDGEGDDQGT 191
E P +E G+ QGT
Sbjct: 743 LEGAAAAAESPPQEEGSAGEAQGT 766
>gi|151301154 mucin 6, gastric [Homo sapiens]
Length = 2439
Score = 32.3 bits (72), Expect = 0.38
Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 7/122 (5%)
Query: 31 THTEDGTSRPPIPVLPGSSTSTSTVTSKEVVLQQNSNMRSLTGSL--RFPGCKSFSSEVM 88
T T GTS+ ++T++S+ S L QNS+ R + + + P S ++ V
Sbjct: 2065 TVTTSGTSQTHSSF--STATASSSFISSSSWLPQNSSSRPPSSPITTQLPHLSSATTPVS 2122
Query: 89 GTGKFTVQSSSHPS-PSCFSGPAERSTERWPSSQPSCGAASTFGAVDSPERDLDPEVAVH 147
T + + S PS PS S S +S PS G +S+F V +P H
Sbjct: 2123 TTNQLSSSFSPSPSAPSTVSSYVPSSHSSPQTSSPSVGTSSSF--VSAPVHSTTLSSGSH 2180
Query: 148 SN 149
S+
Sbjct: 2181 SS 2182
>gi|116256481 TNFAIP3 interacting protein 1 [Homo sapiens]
Length = 636
Score = 31.6 bits (70), Expect = 0.65
Identities = 43/169 (25%), Positives = 66/169 (39%), Gaps = 23/169 (13%)
Query: 78 PGCKSFSSEVMGTGKFTVQSSSHPSPSCFSGPAERSTERWPSSQPSCGAASTFGAVDSPE 137
P SF TGK + ++S +P+C P+++ PS G +S F V +PE
Sbjct: 78 PSLGSFDPLAELTGKDSNVTASPTAPAC---PSDKPAP--VQKPPSSGTSSEFEVV-TPE 131
Query: 138 RDLDPEVAVHSNCQQGQDGALGEDEDRTGN---HEAGVEVGLWPNVDEDGEGDDQGTH-- 192
PE + H+N ALG GN H +E L +E G TH
Sbjct: 132 EQNSPESSSHANAM-----ALGPLPREDGNLMLHLQRLETTLSVCAEEPDHG-QLFTHLG 185
Query: 193 ------GHISHRQRHDEAEGGIPQRLVHLHRPDHQHVPGHRDQGDEHLD 235
++ + +E I Q L R +++ + D+G E D
Sbjct: 186 RMALEFNRLASKVHKNEQRTSILQTLCEQLRKENEALKAKLDKGLEQRD 234
>gi|4504489 histidine-rich glycoprotein precursor [Homo sapiens]
Length = 525
Score = 31.6 bits (70), Expect = 0.65
Identities = 22/83 (26%), Positives = 28/83 (33%), Gaps = 9/83 (10%)
Query: 148 SNCQQGQDGALGEDEDRTGNHEAGVEVGLWPNVDEDGEGDDQGTHGHISHRQRHDEAEGG 207
S+CQ G G N+ + L P+ E G H H H HD
Sbjct: 325 SSCQHATFGTNGAQRHSHNNNSSD----LHPHKHHSHEQHPHGHHPHAHHPHEHDTH--- 377
Query: 208 IPQRLVHLHRPDHQHVPGHRDQG 230
++ H H P H GH G
Sbjct: 378 --RQHPHGHHPHGHHPHGHHPHG 398
>gi|223278403 glutamate receptor, ionotropic, delta 2 (Grid2)
interacting protein [Homo sapiens]
Length = 1211
Score = 30.8 bits (68), Expect = 1.1
Identities = 30/111 (27%), Positives = 41/111 (36%), Gaps = 13/111 (11%)
Query: 41 PIPVLPGSSTSTSTVTSKEVVLQQNSNMRSLTGSLRFPGCKSFSSEVMGTGKFTVQSSSH 100
P+P++PG + + E N M S + S MGT + S
Sbjct: 527 PLPLIPGERQAGDGTSLPET---PNPKMMSAVYAELESRLNSSFKGKMGTVSKSRASPPG 583
Query: 101 PSPSCFSGPAERSTERWPSSQ--------PSC--GAASTFGAVDSPERDLD 141
PSP+ +GP S WPS + P C G AS + P LD
Sbjct: 584 PSPAVTTGPRTLSGVSWPSERLLPSPCYHPLCSGGLASPSSSESHPYASLD 634
>gi|239746322 PREDICTED: hypothetical protein XP_002343729 [Homo
sapiens]
Length = 221
Score = 30.4 bits (67), Expect = 1.5
Identities = 30/113 (26%), Positives = 41/113 (36%), Gaps = 17/113 (15%)
Query: 135 SPERDLDPEVAVHSNCQQGQDGALGED-----------EDRTGNHEAGVEVGLWPNVDED 183
SP L P+ H G DG +D +D G G V L+ ++D
Sbjct: 14 SPSEVLAPDGFKHQQKAVGADGGQEQDAGVHVEQDEGGQDAAGGPAKGPVVMLYNGREQD 73
Query: 184 GEGDDQGTHGHISHRQRHDEAEGGIPQRL-VHLHRPDHQHVPGHRDQGDEHLD 235
G+ G+ R E GI L + PDHQ + H Q D+ D
Sbjct: 74 GQRQAGEEVGY-----RQVEEPDGIDGPLGLECRHPDHQGIAQHSHQEDDCKD 121
>gi|10880979 lymphocyte-specific protein 1 isoform 1 [Homo sapiens]
Length = 339
Score = 30.4 bits (67), Expect = 1.5
Identities = 23/78 (29%), Positives = 33/78 (42%), Gaps = 13/78 (16%)
Query: 141 DPEVAVHSNCQQGQDGALGEDEDRTGNHE---------AGVEVGLWPNVDED-GEGDDQG 190
D E AVH CQ +D L ++ G H ++ P +DED G GD
Sbjct: 27 DEEEAVHEQCQHERDRQLQAQDEEGGGHVPERPKQEMLLSLKPSEAPELDEDEGFGD--- 83
Query: 191 THGHISHRQRHDEAEGGI 208
RQ+H+ A+G +
Sbjct: 84 WSQRPEQRQQHEGAQGAL 101
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.131 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,791,916
Number of Sequences: 37866
Number of extensions: 618135
Number of successful extensions: 1767
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 77
Number of HSP's that attempted gapping in prelim test: 1705
Number of HSP's gapped (non-prelim): 125
length of query: 243
length of database: 18,247,518
effective HSP length: 99
effective length of query: 144
effective length of database: 14,498,784
effective search space: 2087824896
effective search space used: 2087824896
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.