Guide to the Human Genome
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Name: LOC100290606 Sequence: fasta or formatted (137aa) NCBI GI: 239752486
Description:

PREDICTED: hypothetical protein XP_002347335

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.4          6           1
 C cysteine            2.2          3           1
 D aspartate           3.6          5           1
 E glutamate           6.6          9           1
 F phenylalanine       0.7          1           1
 G glycine             2.9          4           1
 H histidine           1.5          2           1
 I isoleucine         10.2         14           2
 K lysine             14.6         20           4
 L leucine             5.1          7           1
 M methionine          3.6          5           1
 N asparagine          4.4          6           1
 P proline             2.9          4           1
 Q glutamine           3.6          5           1
 R arginine            7.3         10           1
 S serine              5.8          8           2
 T threonine           9.5         13           2
 V valine              4.4          6           1
 W tryptophan          1.5          2           1
 Y tyrosine            5.1          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347335 
LOC100293629          0.625   PREDICTED: similar to putative p150 
LOC100291256          0.625   PREDICTED: hypothetical protein XP_002346845 
LOC100289365          0.625   PREDICTED: hypothetical protein XP_002342695 
LOC100130764          0.340   PREDICTED: p150-like 
LOC100130764          0.340   PREDICTED: p150-like 
LOC100130764          0.332   PREDICTED: p150-like 
LOC100292074          0.296   PREDICTED: hypothetical protein XP_002345940 
LOC100290874          0.296   PREDICTED: hypothetical protein XP_002346807 
LOC100294314          0.296   PREDICTED: hypothetical protein XP_002344084 
LOC100294273          0.296   PREDICTED: hypothetical protein XP_002344051 
FLJ10088              0.285   PREDICTED: hypothetical protein 
FLJ10088              0.285   PREDICTED: hypothetical protein 
FLJ10088              0.285   PREDICTED: hypothetical protein 
ABCG1                 0.024   ATP-binding cassette sub-family G member 1 isoform 7...
ABCC2                 0.024   ATP-binding cassette, sub-family C (CFTR/MRP), member...
ANKRD31               0.024   PREDICTED: ankyrin repeat domain 31 
ANKRD31               0.024   PREDICTED: ankyrin repeat domain 31 
ANKRD31               0.024   PREDICTED: ankyrin repeat domain 31 
C7orf31               0.024   hypothetical protein LOC136895 
RBM5                  0.012   RNA binding motif protein 5 
KLHL20                0.012   kelch-like 20 
ATRX                  0.012   transcriptional regulator ATRX isoform 2 
ATRX                  0.012   transcriptional regulator ATRX isoform 1 
NLRP4                 0.008   NLR family, pyrin domain containing 4 
IFT140                0.008   intraflagellar transport 140 
TTN                   0.004   titin isoform N2-A 
TTN                   0.004   titin isoform novex-2 
TTN                   0.004   titin isoform novex-1 
TTN                   0.004   titin isoform N2-B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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