Guide to the Human Genome
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Name: LOC100130764 Sequence: fasta or formatted (262aa) NCBI GI: 239743530
Description:

PREDICTED: p150-like

Referenced in:

DNA Transposon and Retrovirus-related Sequences

Other entries for this name:
alt prot [262aa] PREDICTED: p150-like
alt prot [262aa] PREDICTED: p150-like
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0         13           1
 C cysteine            1.1          3           1
 D aspartate           4.6         12           1
 E glutamate           4.2         11           2
 F phenylalanine       4.2         11           2
 G glycine             3.1          8           2
 H histidine           0.8          2           1
 I isoleucine          9.2         24           1
 K lysine             14.9         39           3
 L leucine             8.0         21           1
 M methionine          2.3          6           1
 N asparagine          5.3         14           1
 P proline             5.3         14           1
 Q glutamine           3.4          9           1
 R arginine            4.2         11           1
 S serine              4.6         12           2
 T threonine           9.9         26           2
 V valine              1.5          4           1
 W tryptophan          4.2         11           1
 Y tyrosine            4.2         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: p150-like 
LOC100130764          0.998   PREDICTED: p150-like 
LOC100130764          0.992   PREDICTED: p150-like 
LOC100293629          0.716   PREDICTED: similar to putative p150 
LOC100291256          0.716   PREDICTED: hypothetical protein XP_002346845 
LOC100289365          0.716   PREDICTED: hypothetical protein XP_002342695 
FLJ10088              0.611   PREDICTED: hypothetical protein 
FLJ10088              0.611   PREDICTED: hypothetical protein 
FLJ10088              0.611   PREDICTED: hypothetical protein 
LOC100291812          0.433   PREDICTED: hypothetical protein XP_002344872 
LOC100290636          0.433   PREDICTED: hypothetical protein XP_002347566 
LOC100289563          0.433   PREDICTED: hypothetical protein XP_002343386 
LOC100290606          0.164   PREDICTED: hypothetical protein XP_002347335 
LOC100292074          0.050   PREDICTED: hypothetical protein XP_002345940 
LOC100290874          0.050   PREDICTED: hypothetical protein XP_002346807 
LOC100294314          0.050   PREDICTED: hypothetical protein XP_002344084 
LOC100294273          0.050   PREDICTED: hypothetical protein XP_002344051 
C7orf31               0.011   hypothetical protein LOC136895 
TNRC6B                0.010   trinucleotide repeat containing 6B isoform 2 
TNRC6B                0.010   trinucleotide repeat containing 6B isoform 1 
KIAA0586              0.010   talpid3 protein 
OR2H1                 0.010   olfactory receptor, family 2, subfamily H, member 1 ...
RAD54B                0.010   RAD54 homolog B 
POU2F1                0.008   POU class 2 homeobox 1 
USP35                 0.006   ubiquitin specific protease 35 
NOC3L                 0.006   nucleolar complex associated 3 homolog 
CCDC113               0.006   coiled-coil domain containing 113 isoform 2 
CCDC113               0.006   coiled-coil domain containing 113 isoform 1 
FBXO18                0.006   F-box only protein, helicase, 18 isoform 1 
FBXO18                0.006   F-box only protein, helicase, 18 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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