Guide to the Human Genome
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Name: LOC100290874 Sequence: fasta or formatted (240aa) NCBI GI: 239748812
Description:

PREDICTED: hypothetical protein XP_002346807

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2         10           2
 C cysteine            4.2         10           2
 D aspartate           4.6         11           1
 E glutamate           4.2         10           1
 F phenylalanine       4.2         10           1
 G glycine             4.6         11           1
 H histidine           2.9          7           2
 I isoleucine          9.6         23           2
 K lysine             11.7         28           3
 L leucine             7.9         19           2
 M methionine          5.4         13           1
 N asparagine          4.6         11           2
 P proline             3.3          8           1
 Q glutamine           2.5          6           1
 R arginine            4.2         10           1
 S serine              5.4         13           3
 T threonine           6.7         16           2
 V valine              1.7          4           1
 W tryptophan          4.2         10           2
 Y tyrosine            4.2         10           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346807 
LOC100292074          1.000   PREDICTED: hypothetical protein XP_002345940 
LOC100294314          1.000   PREDICTED: hypothetical protein XP_002344084 
LOC100294273          0.994   PREDICTED: hypothetical protein XP_002344051 
LOC100293629          0.457   PREDICTED: similar to putative p150 
LOC100291256          0.457   PREDICTED: hypothetical protein XP_002346845 
LOC100289365          0.457   PREDICTED: hypothetical protein XP_002342695 
LOC100290606          0.152   PREDICTED: hypothetical protein XP_002347335 
ASMT                  0.063   acetylserotonin O-methyltransferase 
LOC100130764          0.053   PREDICTED: p150-like 
LOC100130764          0.053   PREDICTED: p150-like 
LOC100130764          0.053   PREDICTED: p150-like 
COPS3                 0.008   COP9 constitutive photomorphogenic homolog subunit 3...
RGR                   0.006   retinal G-protein coupled receptor isoform 2 
RGR                   0.006   retinal G-protein coupled receptor isoform 3 
RGR                   0.006   retinal G-protein coupled receptor isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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