Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: FLJ10088 Sequence: fasta or formatted (224aa) NCBI GI: 239748922
Description:

PREDICTED: hypothetical protein

Referenced in:

DNA Transposon and Retrovirus-related Sequences

Other entries for this name:
alt mRNA [224aa] PREDICTED: hypothetical protein
alt mRNA [224aa] PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5         10           1
 C cysteine            1.3          3           1
 D aspartate           6.2         14           1
 E glutamate           3.6          8           2
 F phenylalanine       3.6          8           2
 G glycine             3.1          7           2
 H histidine           1.8          4           1
 I isoleucine         10.7         24           3
 K lysine             15.2         34           2
 L leucine             8.9         20           2
 M methionine          4.0          9           2
 N asparagine          4.5         10           1
 P proline             3.6          8           1
 Q glutamine           2.7          6           1
 R arginine            4.0          9           1
 S serine              4.9         11           1
 T threonine           6.7         15           2
 V valine              2.2          5           1
 W tryptophan          4.5         10           1
 Y tyrosine            4.0          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
FLJ10088              1.000   PREDICTED: hypothetical protein 
FLJ10088              1.000   PREDICTED: hypothetical protein 
LOC100130764          0.721   PREDICTED: p150-like 
LOC100130764          0.721   PREDICTED: p150-like 
LOC100130764          0.716   PREDICTED: p150-like 
LOC100293629          0.678   PREDICTED: similar to putative p150 
LOC100291256          0.678   PREDICTED: hypothetical protein XP_002346845 
LOC100289365          0.678   PREDICTED: hypothetical protein XP_002342695 
LOC100291812          0.266   PREDICTED: hypothetical protein XP_002344872 
LOC100290636          0.266   PREDICTED: hypothetical protein XP_002347566 
LOC100289563          0.266   PREDICTED: hypothetical protein XP_002343386 
LOC100290606          0.162   PREDICTED: hypothetical protein XP_002347335 
LMOD2                 0.007   leiomodin 2 (cardiac) 
DOCK4                 0.007   dedicator of cytokinesis 4 
COPG                  0.007   coatomer protein complex, subunit gamma 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press