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Search of human proteins with 239752371
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752371 PREDICTED: hypothetical protein XP_002348216 [Homo
sapiens]
(96 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752371 PREDICTED: hypothetical protein XP_002348216 [Homo ... 196 4e-51
gi|239746885 PREDICTED: hypothetical protein XP_002343869 [Homo ... 182 5e-47
gi|60498978 elastin microfibril interfacer 2 [Homo sapiens] 48 2e-06
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 37 0.003
gi|239753682 PREDICTED: hypothetical protein XP_002345751 [Homo ... 36 0.008
gi|239748296 PREDICTED: hypothetical protein [Homo sapiens] 36 0.008
gi|239742194 PREDICTED: hypothetical protein XP_002342449 [Homo ... 36 0.008
gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo s... 35 0.017
gi|226498192 atonal homolog 8 [Homo sapiens] 34 0.022
gi|145701009 acetylcholinesterase collagen-like tail subunit iso... 34 0.029
gi|18105018 acetylcholinesterase collagen-like tail subunit isof... 34 0.029
gi|18105016 acetylcholinesterase collagen-like tail subunit isof... 34 0.029
gi|15826852 acyl-Coenzyme A binding domain containing 3 [Homo sa... 34 0.029
gi|51988887 SH3 domain containing ring finger 1 [Homo sapiens] 34 0.029
gi|156616290 collagen type VI alpha 6 [Homo sapiens] 33 0.038
gi|239750966 PREDICTED: hypothetical protein XP_002347633 [Homo ... 33 0.038
gi|239745372 PREDICTED: hypothetical protein XP_002343483 [Homo ... 33 0.038
gi|87299628 biorientation of chromosomes in cell division 1-like... 33 0.038
gi|24308115 interferon regulatory factor 2 binding protein 1 [Ho... 33 0.038
gi|7706143 armadillo repeat containing, X-linked 1 [Homo sapiens] 33 0.038
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ... 33 0.049
gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo ... 33 0.049
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ... 33 0.049
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens] 33 0.049
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 33 0.049
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 33 0.049
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 33 0.049
gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens] 33 0.049
gi|23510413 sorting nexin 26 [Homo sapiens] 33 0.049
gi|169213235 PREDICTED: hypothetical protein [Homo sapiens] 33 0.064
>gi|239752371 PREDICTED: hypothetical protein XP_002348216 [Homo
sapiens]
Length = 96
Score = 196 bits (497), Expect = 4e-51
Identities = 96/96 (100%), Positives = 96/96 (100%)
Query: 1 MISSIDAKKKKKSFGGRRGRSLRTSSPAFPRPAGMALAWGPSSPPLAPQSQLLLGPPQPP 60
MISSIDAKKKKKSFGGRRGRSLRTSSPAFPRPAGMALAWGPSSPPLAPQSQLLLGPPQPP
Sbjct: 1 MISSIDAKKKKKSFGGRRGRSLRTSSPAFPRPAGMALAWGPSSPPLAPQSQLLLGPPQPP 60
Query: 61 GGGRGVANNGRAGSRAGGRRSGETRALAYFLKIEEK 96
GGGRGVANNGRAGSRAGGRRSGETRALAYFLKIEEK
Sbjct: 61 GGGRGVANNGRAGSRAGGRRSGETRALAYFLKIEEK 96
>gi|239746885 PREDICTED: hypothetical protein XP_002343869 [Homo
sapiens]
Length = 90
Score = 182 bits (462), Expect = 5e-47
Identities = 88/89 (98%), Positives = 89/89 (100%)
Query: 8 KKKKKSFGGRRGRSLRTSSPAFPRPAGMALAWGPSSPPLAPQSQLLLGPPQPPGGGRGVA 67
+KKKKSFGGRRGRSLRTSSPAFPRPAGMALAWGPSSPPLAPQSQLLLGPPQPPGGGRGVA
Sbjct: 2 QKKKKSFGGRRGRSLRTSSPAFPRPAGMALAWGPSSPPLAPQSQLLLGPPQPPGGGRGVA 61
Query: 68 NNGRAGSRAGGRRSGETRALAYFLKIEEK 96
NNGRAGSRAGGRRSGETRALAYFLKIEEK
Sbjct: 62 NNGRAGSRAGGRRSGETRALAYFLKIEEK 90
>gi|60498978 elastin microfibril interfacer 2 [Homo sapiens]
Length = 1053
Score = 47.8 bits (112), Expect = 2e-06
Identities = 26/56 (46%), Positives = 30/56 (53%)
Query: 27 PAFPRPAGMALAWGPSSPPLAPQSQLLLGPPQPPGGGRGVANNGRAGSRAGGRRSG 82
PA PRP+G A A P P+ PQ PPQPPG +A G+AG AG SG
Sbjct: 806 PAPPRPSGPATAEDPGRRPVLPQRPPEERPPQPPGSTGVIAETGQAGPPAGAGVSG 861
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 37.4 bits (85), Expect = 0.003
Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
Query: 12 KSFGGRRGRSLRTSSPAFPRPAGMALAWGPSSPPLAPQSQLLLGPPQPPG-GGRGVAN-N 69
K G+ G+ P P G+ GP P AP + LGPP PPG GG+G+
Sbjct: 64 KGAPGKPGKPGEAGLPGLPGVDGLTGRDGPPGPKGAPGERGSLGPPGPPGLGGKGLPGPP 123
Query: 70 GRAG 73
G AG
Sbjct: 124 GEAG 127
>gi|239753682 PREDICTED: hypothetical protein XP_002345751 [Homo
sapiens]
Length = 186
Score = 35.8 bits (81), Expect = 0.008
Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 16/76 (21%)
Query: 18 RGRSLRTSSPAFPRPAGMALAWGPSSPPLAPQSQLLL----------GPPQPPGGGRGVA 67
RG SLR+SS G+ LA P P A ++QL G P+PPGG RG+
Sbjct: 34 RGDSLRSSSCGLK---GLNLALAPERPA-ADRAQLFAVAVGASGEAPGRPRPPGGVRGLG 89
Query: 68 NNGRAGSRAGGRRSGE 83
AG R G R+G+
Sbjct: 90 RRPAAGPREG--RTGQ 103
>gi|239748296 PREDICTED: hypothetical protein [Homo sapiens]
Length = 186
Score = 35.8 bits (81), Expect = 0.008
Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 16/76 (21%)
Query: 18 RGRSLRTSSPAFPRPAGMALAWGPSSPPLAPQSQLLL----------GPPQPPGGGRGVA 67
RG SLR+SS G+ LA P P A ++QL G P+PPGG RG+
Sbjct: 34 RGDSLRSSSCGLK---GLNLALAPERPA-ADRAQLFAVAVGASGEAPGRPRPPGGVRGLG 89
Query: 68 NNGRAGSRAGGRRSGE 83
AG R G R+G+
Sbjct: 90 RRPAAGPREG--RTGQ 103
>gi|239742194 PREDICTED: hypothetical protein XP_002342449 [Homo
sapiens]
Length = 186
Score = 35.8 bits (81), Expect = 0.008
Identities = 29/76 (38%), Positives = 37/76 (48%), Gaps = 16/76 (21%)
Query: 18 RGRSLRTSSPAFPRPAGMALAWGPSSPPLAPQSQLLL----------GPPQPPGGGRGVA 67
RG SLR+SS G+ LA P P A ++QL G P+PPGG RG+
Sbjct: 34 RGDSLRSSSCGLK---GLNLALAPERPA-ADRAQLFAVAVGASGEAPGRPRPPGGVRGLG 89
Query: 68 NNGRAGSRAGGRRSGE 83
AG R G R+G+
Sbjct: 90 RRPAAGPREG--RTGQ 103
>gi|25777671 protein phosphatase 1, regulatory subunit 10 [Homo
sapiens]
Length = 940
Score = 34.7 bits (78), Expect = 0.017
Identities = 25/72 (34%), Positives = 27/72 (37%), Gaps = 11/72 (15%)
Query: 15 GGRRGRSLRTSSPAFPRPAGMALAWGPSSPPLAPQSQLLLGPPQPPGGG----RGVANNG 70
GG +G P P P GP P P LLGPP PP GG G +
Sbjct: 635 GGPKGMQHFPPGPGGPMP-------GPHGGPGGPVGPRLLGPPPPPRGGDPFWDGPGDPM 687
Query: 71 RAGSRAGGRRSG 82
R G GG G
Sbjct: 688 RGGPMRGGPGPG 699
Score = 26.9 bits (58), Expect = 3.5
Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 15 GGRRGRSLRTSSPAFPRPAGMALAWGPSSPPLAPQSQLLLG----PPQPPGGGRGVANNG 70
GGR G P F G GP + P ++ G P + PGGG G ++
Sbjct: 708 GGRGGNEPPPPPPPFRGARGGRSGGGPPNGRGGPGGGMVGGGGHRPHEGPGGGMGNSSGH 767
Query: 71 RAGSRAGG 78
R GG
Sbjct: 768 RPHEGPGG 775
>gi|226498192 atonal homolog 8 [Homo sapiens]
Length = 321
Score = 34.3 bits (77), Expect = 0.022
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 12/83 (14%)
Query: 16 GRRGRSLRTSSPAFPRPAGMALAWGPSSPPLAPQSQLLLGPPQPPGG------GRGVANN 69
G R R L + PA P P+ P +PP P+S + PP PG + NN
Sbjct: 149 GLRPRILLCAPPARPAPSA------PPAPPAPPESTVRPAPPTRPGESSYSSISHVIYNN 202
Query: 70 GRAGSRAGGRRSGETRALAYFLK 92
+ S + +R GE A + +K
Sbjct: 203 HQDSSASPRKRPGEATAASSEIK 225
>gi|145701009 acetylcholinesterase collagen-like tail subunit
isoform III precursor [Homo sapiens]
Length = 421
Score = 33.9 bits (76), Expect = 0.029
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 11 KKSFGGRRGRSLRTSSPAFPRPAGMALAWGPSSPPLAPQSQLLLGP------PQPPG 61
K+ G++G S P P P+G GP PP P QL++GP P PPG
Sbjct: 201 KRGKQGQKGDSGVMGPPGKPGPSGQPGRPGPPGPP--PAGQLIMGPKGERGFPGPPG 255
>gi|18105018 acetylcholinesterase collagen-like tail subunit isoform
II [Homo sapiens]
Length = 445
Score = 33.9 bits (76), Expect = 0.029
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 11 KKSFGGRRGRSLRTSSPAFPRPAGMALAWGPSSPPLAPQSQLLLGP------PQPPG 61
K+ G++G S P P P+G GP PP P QL++GP P PPG
Sbjct: 225 KRGKQGQKGDSGVMGPPGKPGPSGQPGRPGPPGPP--PAGQLIMGPKGERGFPGPPG 279
>gi|18105016 acetylcholinesterase collagen-like tail subunit isoform
I precursor [Homo sapiens]
Length = 455
Score = 33.9 bits (76), Expect = 0.029
Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 8/57 (14%)
Query: 11 KKSFGGRRGRSLRTSSPAFPRPAGMALAWGPSSPPLAPQSQLLLGP------PQPPG 61
K+ G++G S P P P+G GP PP P QL++GP P PPG
Sbjct: 235 KRGKQGQKGDSGVMGPPGKPGPSGQPGRPGPPGPP--PAGQLIMGPKGERGFPGPPG 289
>gi|15826852 acyl-Coenzyme A binding domain containing 3 [Homo
sapiens]
Length = 528
Score = 33.9 bits (76), Expect = 0.029
Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 34 GMALAWGPSSPPLAPQSQLL---LGPPQPPGGGRGVANNG---RAGSRAGGRRSGETRAL 87
G+ L+ P P A + LL L PP PPG GRG +G G A G + E R L
Sbjct: 16 GLTLSPDPEERPGAEGAPLLPPPLPPPSPPGSGRGPGASGEQPEPGEAAAGGAAEEARRL 75
>gi|51988887 SH3 domain containing ring finger 1 [Homo sapiens]
Length = 888
Score = 33.9 bits (76), Expect = 0.029
Identities = 28/74 (37%), Positives = 35/74 (47%), Gaps = 17/74 (22%)
Query: 6 DAKKKKKSF-----GGRRGRSLRTSSPAFPRPAGMALAWGPSSPPLAPQSQLLLGPPQPP 60
D+KK+KK G R R S PA P + + G + PL Q +GP PP
Sbjct: 711 DSKKEKKGLLKLLSGASTKRKPRVSPPASPT---LEVELGSAELPL----QGAVGPELPP 763
Query: 61 GGGRGVANNGRAGS 74
GGG +GRAGS
Sbjct: 764 GGG-----HGRAGS 772
>gi|156616290 collagen type VI alpha 6 [Homo sapiens]
Length = 2263
Score = 33.5 bits (75), Expect = 0.038
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 11/85 (12%)
Query: 9 KKKKSFGGRRGRSLRTSSPAFPRPAGMALAWGPSSPPLAPQSQLLL----------GPPQ 58
++K + GRRG + + P P G+ + G P P+ + + GP
Sbjct: 1548 RRKTAAHGRRGHTGPQGTAGIPGPDGLEGSLGLKGPQ-GPRGEAGVKGEKGGVGSKGPQG 1606
Query: 59 PPGGGRGVANNGRAGSRAGGRRSGE 83
PPG G N GR GS+ G+
Sbjct: 1607 PPGPGGEAGNQGRLGSQGNKGEPGD 1631
>gi|239750966 PREDICTED: hypothetical protein XP_002347633 [Homo
sapiens]
Length = 261
Score = 33.5 bits (75), Expect = 0.038
Identities = 25/71 (35%), Positives = 28/71 (39%)
Query: 17 RRGRSLRTSSPAFPRPAGMALAWGPSSPPLAPQSQLLLGPPQPPGGGRGVANNGRAGSRA 76
RRGR+ R + P M GPSSP AP S P P + N A S
Sbjct: 190 RRGRAGRGGAAPAPPTGSMRAGPGPSSPSAAPTSHPPPSPACPGPEMETILRNPPARSPG 249
Query: 77 GGRRSGETRAL 87
G SG R L
Sbjct: 250 AGWGSGAGRRL 260
>gi|239745372 PREDICTED: hypothetical protein XP_002343483 [Homo
sapiens]
Length = 261
Score = 33.5 bits (75), Expect = 0.038
Identities = 25/71 (35%), Positives = 28/71 (39%)
Query: 17 RRGRSLRTSSPAFPRPAGMALAWGPSSPPLAPQSQLLLGPPQPPGGGRGVANNGRAGSRA 76
RRGR+ R + P M GPSSP AP S P P + N A S
Sbjct: 190 RRGRAGRGGAAPAPPTGSMRAGPGPSSPSAAPTSHPPPSPACPGPEMETILRNPPARSPG 249
Query: 77 GGRRSGETRAL 87
G SG R L
Sbjct: 250 AGWGSGAGRRL 260
>gi|87299628 biorientation of chromosomes in cell division 1-like
[Homo sapiens]
Length = 3051
Score = 33.5 bits (75), Expect = 0.038
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 41 PSSPPLAPQSQLLLGPPQP-PGGGRGVANNGRAGSRAG 77
P+ PP PQ Q PP P PG G G G AG+ AG
Sbjct: 12 PAPPPPPPQPQPQPPPPPPGPGAGPGAGGAGGAGAGAG 49
>gi|24308115 interferon regulatory factor 2 binding protein 1 [Homo
sapiens]
Length = 584
Score = 33.5 bits (75), Expect = 0.038
Identities = 33/90 (36%), Positives = 41/90 (45%), Gaps = 14/90 (15%)
Query: 7 AKKKKKSFGGRRGRSLRTSSPAFPRPA----GMALAWGPSSPPLAPQSQLLLGPPQPPGG 62
A++ K+S GRS PA PA A A GP PP PQ+Q PQP G
Sbjct: 52 ARQLKRSHVLPEGRS--PGPPALKHPATKDLAAAAAQGPQLPP--PQAQ-----PQPSGT 102
Query: 63 GRGVANNGRAG-SRAGGRRSGETRALAYFL 91
G GV+ R + + GR + AL Y L
Sbjct: 103 GGGVSGQDRYDRATSSGRLPLPSPALEYTL 132
>gi|7706143 armadillo repeat containing, X-linked 1 [Homo sapiens]
Length = 453
Score = 33.5 bits (75), Expect = 0.038
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 54 LGPPQP-PGGGRGVANNGRAGSRAGGRRSGETRALA 88
L P P PGG G + R+GSRAGGR SG+++ A
Sbjct: 138 LAPSLPCPGGRGGGCHPTRSGSRAGGRASGKSKGKA 173
>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
Length = 384
Score = 33.1 bits (74), Expect = 0.049
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 19 GRSLRTSSPAFPRPAGMALAWGPSSPPLAPQSQLLLGPPQPPGGGRGVANNGRAGSRAGG 78
G LR ++P PRP + P+ P APQ+ P + GG G + G+ + G
Sbjct: 116 GSRLRPAAPG-PRPGCSSARASPA--PAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGA 172
Query: 79 RRS 81
R S
Sbjct: 173 RPS 175
>gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo
sapiens]
Length = 209
Score = 33.1 bits (74), Expect = 0.049
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 19 GRSLRTSSPAFPRPAGMALAWGPSSPPLAPQSQLLLGPPQPPGGGRGVANNGRAGSRAGG 78
G LR ++P PRP + P+ P APQ+ P + GG G + G+ + G
Sbjct: 116 GSRLRPAAPG-PRPGCSSARASPA--PAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGA 172
Query: 79 RRS 81
R S
Sbjct: 173 RPS 175
>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
sapiens]
Length = 384
Score = 33.1 bits (74), Expect = 0.049
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 19 GRSLRTSSPAFPRPAGMALAWGPSSPPLAPQSQLLLGPPQPPGGGRGVANNGRAGSRAGG 78
G LR ++P PRP + P+ P APQ+ P + GG G + G+ + G
Sbjct: 116 GSRLRPAAPG-PRPGCSSARASPA--PAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGA 172
Query: 79 RRS 81
R S
Sbjct: 173 RPS 175
>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 33.1 bits (74), Expect = 0.049
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 19 GRSLRTSSPAFPRPAGMALAWGPSSPPLAPQSQLLLGPPQPPGGGRGVANNGRAGSRAGG 78
G LR ++P PRP + P+ P APQ+ P + GG G + G+ + G
Sbjct: 116 GSRLRPAAPG-PRPGCSSARASPA--PAAPQAAARTAPGRAASGGSGPGSRGQGSDQVGA 172
Query: 79 RRS 81
R S
Sbjct: 173 RPS 175
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 33.1 bits (74), Expect = 0.049
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 8/85 (9%)
Query: 5 IDAKKKKKSFGGRRGRSLRTSSPAFPRPAGMALA---WGPSSPPL--APQSQLLLGPPQP 59
+ +K + G GR+ SP P P G+ GP+ P L P Q GPP P
Sbjct: 753 LKGQKGEPGVPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQ---GPPGP 809
Query: 60 PGGGRGVANNGRAGSRAGGRRSGET 84
PG +G G + G+T
Sbjct: 810 PGRDGTPGRDGEPGDPGEDGKPGDT 834
Score = 30.8 bits (68), Expect = 0.24
Identities = 23/65 (35%), Positives = 26/65 (40%), Gaps = 12/65 (18%)
Query: 16 GRRGRSLRTSSPAFPRPAG------MALAWGPSSPPLAPQSQLLLGPPQPPGGGRGVANN 69
G G S P PAG +A A GP+ PP P GPP PPG G +
Sbjct: 974 GEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGPPGPP------GPPGPPGPGLPAGFD 1027
Query: 70 GRAGS 74
GS
Sbjct: 1028 DMEGS 1032
Score = 29.6 bits (65), Expect = 0.54
Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 16 GRRGRSLRTSSPAFPRPAGMALAWGPSSPPLAPQSQLLLGPPQPPGGGRGVANNGRAGS 74
G GR +S P PAG+ G PP P L GPP PPG G+ GS
Sbjct: 918 GEPGR-FGVNSSDVPGPAGLPGVPGREGPPGFPG---LPGPPGPPGREGPPGRTGQKGS 972
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 33.1 bits (74), Expect = 0.049
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 8/85 (9%)
Query: 5 IDAKKKKKSFGGRRGRSLRTSSPAFPRPAGMALA---WGPSSPPL--APQSQLLLGPPQP 59
+ +K + G GR+ SP P P G+ GP+ P L P Q GPP P
Sbjct: 338 LKGQKGEPGVPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQ---GPPGP 394
Query: 60 PGGGRGVANNGRAGSRAGGRRSGET 84
PG +G G + G+T
Sbjct: 395 PGRDGTPGRDGEPGDPGEDGKPGDT 419
Score = 30.8 bits (68), Expect = 0.24
Identities = 23/65 (35%), Positives = 26/65 (40%), Gaps = 12/65 (18%)
Query: 16 GRRGRSLRTSSPAFPRPAG------MALAWGPSSPPLAPQSQLLLGPPQPPGGGRGVANN 69
G G S P PAG +A A GP+ PP P GPP PPG G +
Sbjct: 559 GEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGPPGPP------GPPGPPGPGLPAGFD 612
Query: 70 GRAGS 74
GS
Sbjct: 613 DMEGS 617
Score = 29.6 bits (65), Expect = 0.54
Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 16 GRRGRSLRTSSPAFPRPAGMALAWGPSSPPLAPQSQLLLGPPQPPGGGRGVANNGRAGS 74
G GR +S P PAG+ G PP P L GPP PPG G+ GS
Sbjct: 503 GEPGR-FGVNSSDVPGPAGLPGVPGREGPPGFPG---LPGPPGPPGREGPPGRTGQKGS 557
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 33.1 bits (74), Expect = 0.049
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 8/85 (9%)
Query: 5 IDAKKKKKSFGGRRGRSLRTSSPAFPRPAGMALA---WGPSSPPL--APQSQLLLGPPQP 59
+ +K + G GR+ SP P P G+ GP+ P L P Q GPP P
Sbjct: 518 LKGQKGEPGVPGPPGRAGPPGSPCLPGPPGLPCPVSPLGPAGPALQTVPGPQ---GPPGP 574
Query: 60 PGGGRGVANNGRAGSRAGGRRSGET 84
PG +G G + G+T
Sbjct: 575 PGRDGTPGRDGEPGDPGEDGKPGDT 599
Score = 30.8 bits (68), Expect = 0.24
Identities = 23/65 (35%), Positives = 26/65 (40%), Gaps = 12/65 (18%)
Query: 16 GRRGRSLRTSSPAFPRPAG------MALAWGPSSPPLAPQSQLLLGPPQPPGGGRGVANN 69
G G S P PAG +A A GP+ PP P GPP PPG G +
Sbjct: 739 GEAGAPGHKGSKGAPGPAGARGESGLAGAPGPAGPPGPP------GPPGPPGPGLPAGFD 792
Query: 70 GRAGS 74
GS
Sbjct: 793 DMEGS 797
Score = 29.6 bits (65), Expect = 0.54
Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
Query: 16 GRRGRSLRTSSPAFPRPAGMALAWGPSSPPLAPQSQLLLGPPQPPGGGRGVANNGRAGS 74
G GR +S P PAG+ G PP P L GPP PPG G+ GS
Sbjct: 683 GEPGR-FGVNSSDVPGPAGLPGVPGREGPPGFPG---LPGPPGPPGREGPPGRTGQKGS 737
>gi|32964830 collagen, type VIII, alpha 2 [Homo sapiens]
Length = 703
Score = 33.1 bits (74), Expect = 0.049
Identities = 19/51 (37%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 16 GRRGRSLRTSSPAFPRPAGMALAW-----GPSSPPLAPQSQLLLGPPQPPG 61
G +G P P P G A GP+ PP P S + GPP PPG
Sbjct: 475 GPQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSPGITGPPGPPG 525
Score = 25.8 bits (55), Expect = 7.8
Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 23 RTSSPAFPRPAGMALAWGPSSPPLAPQSQLLLGPPQPPG--GGRGVANNGRAGSR 75
+ P P G G P Q L GPP PPG G G+ G+ G++
Sbjct: 124 KAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPGPSGITIPGKPGAQ 178
Score = 25.8 bits (55), Expect = 7.8
Identities = 17/54 (31%), Positives = 20/54 (37%), Gaps = 4/54 (7%)
Query: 16 GRRGRSLRTSSPAFPRPAGMALAWGPSSPP----LAPQSQLLLGPPQPPGGGRG 65
G G + P P P G A GP PP + L PQ P G +G
Sbjct: 246 GAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGAAGLPGPQGPSGAKG 299
Score = 25.8 bits (55), Expect = 7.8
Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Query: 16 GRRGRSLRTSSPAFPRPAGMALAWGPSSPPLAPQSQLLL----GPPQPPGGGRGVANNGR 71
G++G P P+G+ GP+ P + PQ L G P PPG GR G
Sbjct: 445 GQKGDLGLPGQPGLRGPSGIPGLQGPAGP-IGPQGLPGLKGEPGLPGPPGEGR-AGEPGT 502
Query: 72 AG 73
AG
Sbjct: 503 AG 504
>gi|23510413 sorting nexin 26 [Homo sapiens]
Length = 1126
Score = 33.1 bits (74), Expect = 0.049
Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 6/67 (8%)
Query: 20 RSLRTSSPAFPR-PAGMALAWGPSSP-----PLAPQSQLLLGPPQPPGGGRGVANNGRAG 73
RS P PR P WGP +P P P LLL PP GRG + +
Sbjct: 1033 RSRSDPGPPVPRLPQKQRAPWGPRTPHRVPGPWGPPEPLLLYRAAPPAYGRGGELHRGSL 1092
Query: 74 SRAGGRR 80
R GG+R
Sbjct: 1093 YRNGGQR 1099
Score = 26.9 bits (58), Expect = 3.5
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 10/43 (23%)
Query: 27 PAFPRPAGMALAWGP----------SSPPLAPQSQLLLGPPQP 59
P P P + LA GP SSPP P+S+ GPP P
Sbjct: 1001 PTPPEPLYVNLALGPRGPSPASSSSSSPPAHPRSRSDPGPPVP 1043
>gi|169213235 PREDICTED: hypothetical protein [Homo sapiens]
Length = 308
Score = 32.7 bits (73), Expect = 0.064
Identities = 19/52 (36%), Positives = 22/52 (42%)
Query: 26 SPAFPRPAGMALAWGPSSPPLAPQSQLLLGPPQPPGGGRGVANNGRAGSRAG 77
S + RP G A P SP + PP PP GG + RAG R G
Sbjct: 42 SKLWRRPRGAVSAGAPGSPLYRVSAPPPAPPPPPPPGGPSRSERPRAGLRPG 93
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.134 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,257,830
Number of Sequences: 37866
Number of extensions: 354022
Number of successful extensions: 3874
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 358
Number of HSP's that attempted gapping in prelim test: 2785
Number of HSP's gapped (non-prelim): 1401
length of query: 96
length of database: 18,247,518
effective HSP length: 67
effective length of query: 29
effective length of database: 15,710,496
effective search space: 455604384
effective search space used: 455604384
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.