Guide to the Human Genome
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Search of human proteins with 239752010

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239752010 PREDICTED: hypothetical protein XP_002348066 [Homo
sapiens]
         (211 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239752010 PREDICTED: hypothetical protein XP_002348066 [Homo ...   429   e-121
gi|239746495 PREDICTED: hypothetical protein XP_002343746 [Homo ...   429   e-121
gi|239757493 PREDICTED: hypothetical protein [Homo sapiens]           426   e-120
gi|22094135 DOT1-like, histone H3 methyltransferase [Homo sapiens]     38   0.007
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]         37   0.016
gi|239741585 PREDICTED: hypothetical protein XP_002342243 [Homo ...    36   0.027
gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]        35   0.036
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]                  35   0.047
gi|239750672 PREDICTED: hypothetical protein [Homo sapiens]            35   0.061
gi|239744982 PREDICTED: hypothetical protein [Homo sapiens]            35   0.061
gi|18079216 CASK interacting protein 1 [Homo sapiens]                  34   0.079
gi|239756174 PREDICTED: hypothetical protein [Homo sapiens]            34   0.10 
gi|109715839 adherens junction associated protein 1 [Homo sapiens]     33   0.14 
gi|9055278 adherens junction associated protein 1 [Homo sapiens]       33   0.14 
gi|114431244 von Willebrand factor C and EGF domains [Homo sapiens]    33   0.14 
gi|239754368 PREDICTED: hypothetical protein [Homo sapiens]            33   0.18 
gi|239748915 PREDICTED: hypothetical protein XP_002346855 [Homo ...    33   0.18 
gi|239742939 PREDICTED: hypothetical protein XP_002342693 [Homo ...    33   0.18 
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo...    33   0.18 
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ...    33   0.18 
gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens]              33   0.23 
gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens]              33   0.23 
gi|239749989 PREDICTED: otogelin isoform 2 [Homo sapiens]              33   0.23 
gi|239749987 PREDICTED: otogelin isoform 1 [Homo sapiens]              33   0.23 
gi|239744300 PREDICTED: otogelin isoform 2 [Homo sapiens]              33   0.23 
gi|239744298 PREDICTED: otogelin isoform 1 [Homo sapiens]              33   0.23 
gi|4505035 lymphotoxin-beta isoform a [Homo sapiens]                   33   0.23 
gi|112734870 hypothetical protein LOC57648 [Homo sapiens]              33   0.23 
gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens]             32   0.30 
gi|239752594 PREDICTED: hypothetical protein, partial [Homo sapi...    32   0.30 

>gi|239752010 PREDICTED: hypothetical protein XP_002348066 [Homo
           sapiens]
          Length = 211

 Score =  429 bits (1104), Expect = e-121
 Identities = 211/211 (100%), Positives = 211/211 (100%)

Query: 1   MASGSDSSSDGLWYSLRFLFFMGLRSSEALGCDLLPLPLLEQLRAAIIRGTKIWTRGLVR 60
           MASGSDSSSDGLWYSLRFLFFMGLRSSEALGCDLLPLPLLEQLRAAIIRGTKIWTRGLVR
Sbjct: 1   MASGSDSSSDGLWYSLRFLFFMGLRSSEALGCDLLPLPLLEQLRAAIIRGTKIWTRGLVR 60

Query: 61  PARLALTGAIILWGVLIGIFWRILGVRGSYPPVGGPPRHLPPGPRHLRIRSRLPAAARGS 120
           PARLALTGAIILWGVLIGIFWRILGVRGSYPPVGGPPRHLPPGPRHLRIRSRLPAAARGS
Sbjct: 61  PARLALTGAIILWGVLIGIFWRILGVRGSYPPVGGPPRHLPPGPRHLRIRSRLPAAARGS 120

Query: 121 GAAPLPPCSAAYTRLSGTGAREGLRIATPVRVLDPSRSRCHGPLFASCQLTPSAGLKTPR 180
           GAAPLPPCSAAYTRLSGTGAREGLRIATPVRVLDPSRSRCHGPLFASCQLTPSAGLKTPR
Sbjct: 121 GAAPLPPCSAAYTRLSGTGAREGLRIATPVRVLDPSRSRCHGPLFASCQLTPSAGLKTPR 180

Query: 181 QGASLQATPAKPSLQATPPSTCGVQSQGAPL 211
           QGASLQATPAKPSLQATPPSTCGVQSQGAPL
Sbjct: 181 QGASLQATPAKPSLQATPPSTCGVQSQGAPL 211


>gi|239746495 PREDICTED: hypothetical protein XP_002343746 [Homo
           sapiens]
          Length = 211

 Score =  429 bits (1104), Expect = e-121
 Identities = 211/211 (100%), Positives = 211/211 (100%)

Query: 1   MASGSDSSSDGLWYSLRFLFFMGLRSSEALGCDLLPLPLLEQLRAAIIRGTKIWTRGLVR 60
           MASGSDSSSDGLWYSLRFLFFMGLRSSEALGCDLLPLPLLEQLRAAIIRGTKIWTRGLVR
Sbjct: 1   MASGSDSSSDGLWYSLRFLFFMGLRSSEALGCDLLPLPLLEQLRAAIIRGTKIWTRGLVR 60

Query: 61  PARLALTGAIILWGVLIGIFWRILGVRGSYPPVGGPPRHLPPGPRHLRIRSRLPAAARGS 120
           PARLALTGAIILWGVLIGIFWRILGVRGSYPPVGGPPRHLPPGPRHLRIRSRLPAAARGS
Sbjct: 61  PARLALTGAIILWGVLIGIFWRILGVRGSYPPVGGPPRHLPPGPRHLRIRSRLPAAARGS 120

Query: 121 GAAPLPPCSAAYTRLSGTGAREGLRIATPVRVLDPSRSRCHGPLFASCQLTPSAGLKTPR 180
           GAAPLPPCSAAYTRLSGTGAREGLRIATPVRVLDPSRSRCHGPLFASCQLTPSAGLKTPR
Sbjct: 121 GAAPLPPCSAAYTRLSGTGAREGLRIATPVRVLDPSRSRCHGPLFASCQLTPSAGLKTPR 180

Query: 181 QGASLQATPAKPSLQATPPSTCGVQSQGAPL 211
           QGASLQATPAKPSLQATPPSTCGVQSQGAPL
Sbjct: 181 QGASLQATPAKPSLQATPPSTCGVQSQGAPL 211


>gi|239757493 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 211

 Score =  426 bits (1096), Expect = e-120
 Identities = 210/211 (99%), Positives = 210/211 (99%)

Query: 1   MASGSDSSSDGLWYSLRFLFFMGLRSSEALGCDLLPLPLLEQLRAAIIRGTKIWTRGLVR 60
           MASGSDSSSDGLWYSLRFLFFMGLRSSEALGCDLLPLPLLEQLRAAIIRGTKIWTRGLVR
Sbjct: 1   MASGSDSSSDGLWYSLRFLFFMGLRSSEALGCDLLPLPLLEQLRAAIIRGTKIWTRGLVR 60

Query: 61  PARLALTGAIILWGVLIGIFWRILGVRGSYPPVGGPPRHLPPGPRHLRIRSRLPAAARGS 120
           PARLALTGAIILWGVLIGIFWRIL VRGSYPPVGGPPRHLPPGPRHLRIRSRLPAAARGS
Sbjct: 61  PARLALTGAIILWGVLIGIFWRILRVRGSYPPVGGPPRHLPPGPRHLRIRSRLPAAARGS 120

Query: 121 GAAPLPPCSAAYTRLSGTGAREGLRIATPVRVLDPSRSRCHGPLFASCQLTPSAGLKTPR 180
           GAAPLPPCSAAYTRLSGTGAREGLRIATPVRVLDPSRSRCHGPLFASCQLTPSAGLKTPR
Sbjct: 121 GAAPLPPCSAAYTRLSGTGAREGLRIATPVRVLDPSRSRCHGPLFASCQLTPSAGLKTPR 180

Query: 181 QGASLQATPAKPSLQATPPSTCGVQSQGAPL 211
           QGASLQATPAKPSLQATPPSTCGVQSQGAPL
Sbjct: 181 QGASLQATPAKPSLQATPPSTCGVQSQGAPL 211


>gi|22094135 DOT1-like, histone H3 methyltransferase [Homo sapiens]
          Length = 1537

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 47/154 (30%), Positives = 59/154 (38%), Gaps = 20/154 (12%)

Query: 78   GIFWRILGVRGSYPP----VGGPPRHLPPGPRH-LRIRSRLPAAARG----SGAAPLPPC 128
            G  +  +G R S P     +  P   LP  P H L    RL  AA+G    +    LP  
Sbjct: 972  GSLFATVGSRSSTPQHPLLLAQPRNSLPASPAHQLSSSPRLGGAAQGPLPEASKGDLPSD 1031

Query: 129  SAAYTRLSGTGAREGLRIATPVRVLDPSRSRCHGPLFASCQ--LTPSAGLKTPRQGASLQ 186
            S      S    R    I T       S S  H PL AS +    PS G  + R+G   +
Sbjct: 1032 SGFSDPESEAKRRIVFTITTGAGSAKQSPSSKHSPLTASARGDCVPSHGQDSRRRGRRKR 1091

Query: 187  ATPAKPSLQA-------TPPSTCGV--QSQGAPL 211
            A+   PSL A         PS  G+  Q  G+PL
Sbjct: 1092 ASAGTPSLSAGVSPKRRALPSVAGLFTQPSGSPL 1125


>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
          Length = 904

 Score = 36.6 bits (83), Expect = 0.016
 Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 14/104 (13%)

Query: 96  PPRHLPPGPRHLRIRSRLPAAARGSGAAPLPPCSAAYTRLSGTGAREGLRIATPVRVLDP 155
           PPR +PP PRH R RS +    R S +      S++ +R      +   R ++P     P
Sbjct: 328 PPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSP-----P 382

Query: 156 SRSRCHGPLFASCQLTPSAGLKTPRQGASLQATPAKPSLQATPP 199
            ++R         +L+PSA     R   S  ATP   +  +  P
Sbjct: 383 RKTR---------RLSPSASPPRRRHRPSPPATPPPKTRHSPTP 417


>gi|239741585 PREDICTED: hypothetical protein XP_002342243 [Homo
           sapiens]
          Length = 439

 Score = 35.8 bits (81), Expect = 0.027
 Identities = 44/148 (29%), Positives = 59/148 (39%), Gaps = 23/148 (15%)

Query: 85  GVRGSYPPVGGPPRHLP----PGPRHLRIRSRLPAAARGSGAAPL------PPCSAAYTR 134
           G+ G     G  P   P    PG R LR+ S+LP+      AAPL       P    ++R
Sbjct: 162 GLVGKQREGGNGPWRAPVFRLPGAR-LRLSSQLPSPTTLPRAAPLTPYRPGSPSPRGHSR 220

Query: 135 L-SGTGAREGLRI-ATPVRVLDPSRSRCH-----GPLFASCQLTPSAGLKTPRQGASLQA 187
           L S    R  LR+ A P+  +      CH     G    SC+        +P Q   L  
Sbjct: 221 LRSRPPTRAQLRVGANPLSPVPARLRGCHSVRPEGGGVRSCRTLGCCPPTSPHQPPRLPV 280

Query: 188 TP-----AKPSLQATPPSTCGVQSQGAP 210
           TP     A PSLQ+  P+  G   + +P
Sbjct: 281 TPVPQSVALPSLQSARPAAAGAAPRLSP 308


>gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]
          Length = 380

 Score = 35.4 bits (80), Expect = 0.036
 Identities = 26/62 (41%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 88  GSYPPVGGPPRHLPPGPRHLRIRSRLPAAARGSGAA--PLPPCSAAYTRLSGTGAREGLR 145
           G  PP G PP   PP P  L   S +PAAA G+G    P PP  AA     G     GL 
Sbjct: 169 GPPPPPGPPPPPGPPPPPGLP-PSGVPAAAHGAGGGPPPAPPLPAAQGPGGGGAGAPGLA 227

Query: 146 IA 147
            A
Sbjct: 228 AA 229


>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
          Length = 814

 Score = 35.0 bits (79), Expect = 0.047
 Identities = 28/72 (38%), Positives = 34/72 (47%), Gaps = 12/72 (16%)

Query: 77  IGIFWRILGVRGSYP---PVGGPPRHLPPGPRHLRIRSRLPAAARGSGAAPLPPCSAAYT 133
           +G   R+   R + P   PV GPP      PR   +RS+L A A   G AP PP  A   
Sbjct: 328 LGSGLRVCSSRPAAPSVCPVRGPP------PRPGTVRSQLGARANEGGGAPRPPAGA--- 378

Query: 134 RLSGTGAREGLR 145
           R+ G  AR  LR
Sbjct: 379 RVFGVWARGRLR 390


>gi|239750672 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 627

 Score = 34.7 bits (78), Expect = 0.061
 Identities = 33/109 (30%), Positives = 46/109 (42%), Gaps = 10/109 (9%)

Query: 102 PGPRHLRIRSRLPAAARGSGAAPLPPCSAAYTRLSGTGAREGLRIATPVRVLDPSRSRCH 161
           PG R +R+ + L  A      A L  C A   R+      E  R+ TP   L P+ +   
Sbjct: 140 PG-RSMRVATGLYEAYEAERRAKLQQCRAERERIM---REEKRRLFTP---LSPAAAAAA 192

Query: 162 GPLFASCQLTPSAGLKTPRQGASLQATPAKPSLQATPPSTCGVQSQGAP 210
               AS    PSAG  +    ASL A+PA  + +   PS    ++Q  P
Sbjct: 193 AAAAASA---PSAGSSSSCSSASLPASPAPRAARKASPSPSSARTQPPP 238


>gi|239744982 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 627

 Score = 34.7 bits (78), Expect = 0.061
 Identities = 33/109 (30%), Positives = 46/109 (42%), Gaps = 10/109 (9%)

Query: 102 PGPRHLRIRSRLPAAARGSGAAPLPPCSAAYTRLSGTGAREGLRIATPVRVLDPSRSRCH 161
           PG R +R+ + L  A      A L  C A   R+      E  R+ TP   L P+ +   
Sbjct: 140 PG-RSMRVATGLYEAYEAERRAKLQQCRAERERIM---REEKRRLFTP---LSPAAAAAA 192

Query: 162 GPLFASCQLTPSAGLKTPRQGASLQATPAKPSLQATPPSTCGVQSQGAP 210
               AS    PSAG  +    ASL A+PA  + +   PS    ++Q  P
Sbjct: 193 AAAAASA---PSAGSSSSCSSASLPASPAPRAARKASPSPSSARTQPPP 238


>gi|18079216 CASK interacting protein 1 [Homo sapiens]
          Length = 1431

 Score = 34.3 bits (77), Expect = 0.079
 Identities = 30/107 (28%), Positives = 41/107 (38%), Gaps = 17/107 (15%)

Query: 88   GSYPPVGGPPRHLPPGPRHLRIRSRLPAAARGSGAAPLPPCS--AAYTRLSGTGAREGLR 145
            G+ PPV   P   P  P+ ++  + LP+ + G   AP P     AA  +  GT    G  
Sbjct: 1265 GTPPPVSPKPPPPPTAPKPVKAVAGLPSGSAGPSPAPSPARQPPAALAKPPGTPPSLG-- 1322

Query: 146  IATPVRVLDPSRSRCHGPLFASCQLTPSAGLKTPRQGASLQATPAKP 192
             A+P +   P     H P             K PR  A+  A  A P
Sbjct: 1323 -ASPAKPPSPGAPALHVP------------AKPPRAAAAAAAAAAAP 1356



 Score = 27.7 bits (60), Expect = 7.4
 Identities = 37/139 (26%), Positives = 50/139 (35%), Gaps = 31/139 (22%)

Query: 91   PPVGGPPR---HLPPGPR---HLRIRSRLPAAARGSGAAPLPPCSAAYTRLS------GT 138
            PP   PP    HLPP P      R  ++ P + +     P+P    + T  S      G 
Sbjct: 1196 PPAEPPPTDLAHLPPLPPPEGEARKPAKPPVSPKPVLTQPVPKLQGSPTPTSKKVPLPGP 1255

Query: 139  GAREGLRI-----------------ATPVRVLD--PSRSRCHGPLFASCQLTPSAGLKTP 179
            G+ E  R                    PV+ +   PS S    P  +  +  P+A  K P
Sbjct: 1256 GSPEVKRAHGTPPPVSPKPPPPPTAPKPVKAVAGLPSGSAGPSPAPSPARQPPAALAKPP 1315

Query: 180  RQGASLQATPAKPSLQATP 198
                SL A+PAKP     P
Sbjct: 1316 GTPPSLGASPAKPPSPGAP 1334



 Score = 27.3 bits (59), Expect = 9.7
 Identities = 13/21 (61%), Positives = 13/21 (61%), Gaps = 1/21 (4%)

Query: 87  RGSYPPVGGPPRH-LPPGPRH 106
           R S PPV G PR  LPPG  H
Sbjct: 753 RASVPPVPGKPRQVLPPGTSH 773


>gi|239756174 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 625

 Score = 33.9 bits (76), Expect = 0.10
 Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 12/109 (11%)

Query: 102 PGPRHLRIRSRLPAAARGSGAAPLPPCSAAYTRLSGTGAREGLRIATPVRVLDPSRSRCH 161
           PG R +R+ + L  A      A L  C A   R+      E  R+ TP   L P+ +   
Sbjct: 140 PG-RSMRVATGLYEAYEAERRAKLQQCRAERDRIM---REEKRRLFTP---LSPAAAAA- 191

Query: 162 GPLFASCQLTPSAGLKTPRQGASLQATPAKPSLQATPPSTCGVQSQGAP 210
               A+    PSAG  +    ASL A+PA  + +   PS    ++Q  P
Sbjct: 192 ----AAAASAPSAGSSSSCSSASLPASPAPRAARKASPSPSSARTQPPP 236


>gi|109715839 adherens junction associated protein 1 [Homo sapiens]
          Length = 411

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 32/114 (28%), Positives = 42/114 (36%), Gaps = 21/114 (18%)

Query: 97  PRHLPPGPRHLRIRSRLPAAARGSGAAPLPPCSAAYTRLSGTGAREGLRIATPVRVLDPS 156
           PR  P  PR    RS  PA       +P PP      R+ G             ++  P 
Sbjct: 54  PRSPPRPPRLWSFRSGQPARVPAPVWSPRPP---RVERIHG-------------QMQMPR 97

Query: 157 RSRCHGPLFASCQLTPSAGLKTPRQGASLQATPAKPSLQATPPSTCGVQSQGAP 210
             R H P   +  L P AGL  P   A      + PSL ++  S+    + GAP
Sbjct: 98  ARRAHRPRDQAAALVPKAGLAKPPAAAK-----SSPSLASSSSSSSSAVAGGAP 146


>gi|9055278 adherens junction associated protein 1 [Homo sapiens]
          Length = 411

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 32/114 (28%), Positives = 42/114 (36%), Gaps = 21/114 (18%)

Query: 97  PRHLPPGPRHLRIRSRLPAAARGSGAAPLPPCSAAYTRLSGTGAREGLRIATPVRVLDPS 156
           PR  P  PR    RS  PA       +P PP      R+ G             ++  P 
Sbjct: 54  PRSPPRPPRLWSFRSGQPARVPAPVWSPRPP---RVERIHG-------------QMQMPR 97

Query: 157 RSRCHGPLFASCQLTPSAGLKTPRQGASLQATPAKPSLQATPPSTCGVQSQGAP 210
             R H P   +  L P AGL  P   A      + PSL ++  S+    + GAP
Sbjct: 98  ARRAHRPRDQAAALVPKAGLAKPPAAAK-----SSPSLASSSSSSSSAVAGGAP 146


>gi|114431244 von Willebrand factor C and EGF domains [Homo sapiens]
          Length = 955

 Score = 33.5 bits (75), Expect = 0.14
 Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 13/124 (10%)

Query: 84  LGVRGSYPPVGGPPRHLPPGPRHLRIRSRLPAAARGSGAAPLPPCSAAYTRLSGTGAR-- 141
           LG+  ++P   G    L PGP        LP A+ G   AP PP        S +GA+  
Sbjct: 828 LGLTATFPGEPGASPRLSPGPSTPPGAPTLPLASPG---APQPPPVTPERSFSASGAQIV 884

Query: 142 --------EGLRIATPVRVLDPSRSRCHGPLFASCQLTPSAGLKTPRQGASLQATPAKPS 193
                     L  A+ + ++DPS S+    L     L+P+    +    A+    P +P 
Sbjct: 885 SRWPPLPGTLLTEASALSMMDPSPSKTPITLLGPRVLSPTTSRLSTALAATTHPGPQQPP 944

Query: 194 LQAT 197
           + A+
Sbjct: 945 VGAS 948


>gi|239754368 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 336

 Score = 33.1 bits (74), Expect = 0.18
 Identities = 37/119 (31%), Positives = 42/119 (35%), Gaps = 10/119 (8%)

Query: 89  SYPPVGGPPRHLPPGPRHLRIRSRLPAAARGSGAAPLPPCSAAYTRLSGTGAREGLRIAT 148
           S PP   P R   P PR      R P AA G G   LPPC     RL  +G R       
Sbjct: 178 SRPPHPAPTR---PTPRVQGGFGREPRAAAGQGRGWLPPCR---LRLQDSGPRRRPGPGP 231

Query: 149 PVRVLDPSRSRCHGPLFASCQLTPSAGLKTPRQG----ASLQATPAKPSLQATPPSTCG 203
           P      SR     P  A    T  +G     +G    +S  A+ A P     P   CG
Sbjct: 232 PALRSGRSRGSGRPPDSAGAAGTGGSGWAAALRGWPAPSSFAASSALPEECLPPRRGCG 290


>gi|239748915 PREDICTED: hypothetical protein XP_002346855 [Homo
           sapiens]
          Length = 336

 Score = 33.1 bits (74), Expect = 0.18
 Identities = 37/119 (31%), Positives = 42/119 (35%), Gaps = 10/119 (8%)

Query: 89  SYPPVGGPPRHLPPGPRHLRIRSRLPAAARGSGAAPLPPCSAAYTRLSGTGAREGLRIAT 148
           S PP   P R   P PR      R P AA G G   LPPC     RL  +G R       
Sbjct: 178 SRPPHPAPTR---PTPRVQGGFGREPRAAAGQGRGWLPPCR---LRLQDSGPRRRPGPGP 231

Query: 149 PVRVLDPSRSRCHGPLFASCQLTPSAGLKTPRQG----ASLQATPAKPSLQATPPSTCG 203
           P      SR     P  A    T  +G     +G    +S  A+ A P     P   CG
Sbjct: 232 PALRSGRSRGSGRPPDSAGAAGTGGSGWAAALRGWPAPSSFAASSALPEECLPPRRGCG 290


>gi|239742939 PREDICTED: hypothetical protein XP_002342693 [Homo
           sapiens]
          Length = 321

 Score = 33.1 bits (74), Expect = 0.18
 Identities = 37/119 (31%), Positives = 42/119 (35%), Gaps = 10/119 (8%)

Query: 89  SYPPVGGPPRHLPPGPRHLRIRSRLPAAARGSGAAPLPPCSAAYTRLSGTGAREGLRIAT 148
           S PP   P R   P PR      R P AA G G   LPPC     RL  +G R       
Sbjct: 178 SRPPHPAPTR---PTPRVQGGFGREPRAAAGQGRGWLPPCR---LRLQDSGPRRRPGPGP 231

Query: 149 PVRVLDPSRSRCHGPLFASCQLTPSAGLKTPRQG----ASLQATPAKPSLQATPPSTCG 203
           P      SR     P  A    T  +G     +G    +S  A+ A P     P   CG
Sbjct: 232 PALRSGRSRGSGRPPDSAGAAGTGGSGWAAALRGWPAPSSFAASSALPEECLPPRRGCG 290


>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
           sapiens]
          Length = 503

 Score = 33.1 bits (74), Expect = 0.18
 Identities = 37/123 (30%), Positives = 47/123 (38%), Gaps = 18/123 (14%)

Query: 91  PPVGGPPRHLPPGP-----------RHLRIRSR---LPAAARGSGAAPLPPCSAAYTRLS 136
           PP    P  LPP             R+L + S    LP+  R SG  P PP       + 
Sbjct: 312 PPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGR-SGPLPPPPSERPPPPVR 370

Query: 137 GTGAREGLRIATPVRVLDPSRSRCHGPLFASCQLTPSAGLKTPRQGASLQATPAKPSLQA 196
               R G     P    + S SR    L A+ QL   +G+ +PR G      P +PS  A
Sbjct: 371 DPPGRSGPLPPPPPVSRNGSTSRA---LPATPQLPSRSGVDSPRSGPRPPLPPDRPSAGA 427

Query: 197 TPP 199
            PP
Sbjct: 428 PPP 430


>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
           sapiens]
          Length = 503

 Score = 33.1 bits (74), Expect = 0.18
 Identities = 37/123 (30%), Positives = 47/123 (38%), Gaps = 18/123 (14%)

Query: 91  PPVGGPPRHLPPGP-----------RHLRIRSR---LPAAARGSGAAPLPPCSAAYTRLS 136
           PP    P  LPP             R+L + S    LP+  R SG  P PP       + 
Sbjct: 312 PPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGR-SGPLPPPPSERPPPPVR 370

Query: 137 GTGAREGLRIATPVRVLDPSRSRCHGPLFASCQLTPSAGLKTPRQGASLQATPAKPSLQA 196
               R G     P    + S SR    L A+ QL   +G+ +PR G      P +PS  A
Sbjct: 371 DPPGRSGPLPPPPPVSRNGSTSRA---LPATPQLPSRSGVDSPRSGPRPPLPPDRPSAGA 427

Query: 197 TPP 199
            PP
Sbjct: 428 PPP 430


>gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens]
          Length = 2852

 Score = 32.7 bits (73), Expect = 0.23
 Identities = 42/131 (32%), Positives = 53/131 (40%), Gaps = 26/131 (19%)

Query: 85   GVRGSYPPVGGP----PRHLPPGP----RHLRIRSRLPAAARGSGAAPLPPCSAAYTRLS 136
            G  G   P+G P    P  LP  P    +H  + +R PA         LPP + A   LS
Sbjct: 1665 GEAGHSQPMGSPASPQPHPLPSAPPRPAQHTTMATRSPA---------LPPETPAAASLS 1715

Query: 137  GTGAREGLRIATPVRVLD---PSRSRCHGPLFASCQLTP---SAGLKTPRQGASLQATPA 190
               A +GL  ATP   L+   PS+     P   S  L     SA + TP   AS+  TP 
Sbjct: 1716 T--ATDGLA-ATPFMSLESTRPSQLLSGLPPDTSLPLAKVGTSAPVATPGPKASVITTPL 1772

Query: 191  KPSLQATPPST 201
            +P     P  T
Sbjct: 1773 QPQATTLPAQT 1783


>gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens]
          Length = 2924

 Score = 32.7 bits (73), Expect = 0.23
 Identities = 42/131 (32%), Positives = 53/131 (40%), Gaps = 26/131 (19%)

Query: 85   GVRGSYPPVGGP----PRHLPPGP----RHLRIRSRLPAAARGSGAAPLPPCSAAYTRLS 136
            G  G   P+G P    P  LP  P    +H  + +R PA         LPP + A   LS
Sbjct: 1737 GEAGHSQPMGSPASPQPHPLPSAPPRPAQHTTMATRSPA---------LPPETPAAASLS 1787

Query: 137  GTGAREGLRIATPVRVLD---PSRSRCHGPLFASCQLTP---SAGLKTPRQGASLQATPA 190
               A +GL  ATP   L+   PS+     P   S  L     SA + TP   AS+  TP 
Sbjct: 1788 T--ATDGLA-ATPFMSLESTRPSQLLSGLPPDTSLPLAKVGTSAPVATPGPKASVITTPL 1844

Query: 191  KPSLQATPPST 201
            +P     P  T
Sbjct: 1845 QPQATTLPAQT 1855


>gi|239749989 PREDICTED: otogelin isoform 2 [Homo sapiens]
          Length = 2852

 Score = 32.7 bits (73), Expect = 0.23
 Identities = 42/131 (32%), Positives = 53/131 (40%), Gaps = 26/131 (19%)

Query: 85   GVRGSYPPVGGP----PRHLPPGP----RHLRIRSRLPAAARGSGAAPLPPCSAAYTRLS 136
            G  G   P+G P    P  LP  P    +H  + +R PA         LPP + A   LS
Sbjct: 1665 GEAGHSQPMGSPASPQPHPLPSAPPRPAQHTTMATRSPA---------LPPETPAAASLS 1715

Query: 137  GTGAREGLRIATPVRVLD---PSRSRCHGPLFASCQLTP---SAGLKTPRQGASLQATPA 190
               A +GL  ATP   L+   PS+     P   S  L     SA + TP   AS+  TP 
Sbjct: 1716 T--ATDGLA-ATPFMSLESTRPSQLLSGLPPDTSLPLAKVGTSAPVATPGPKASVITTPL 1772

Query: 191  KPSLQATPPST 201
            +P     P  T
Sbjct: 1773 QPQATTLPAQT 1783


>gi|239749987 PREDICTED: otogelin isoform 1 [Homo sapiens]
          Length = 2924

 Score = 32.7 bits (73), Expect = 0.23
 Identities = 42/131 (32%), Positives = 53/131 (40%), Gaps = 26/131 (19%)

Query: 85   GVRGSYPPVGGP----PRHLPPGP----RHLRIRSRLPAAARGSGAAPLPPCSAAYTRLS 136
            G  G   P+G P    P  LP  P    +H  + +R PA         LPP + A   LS
Sbjct: 1737 GEAGHSQPMGSPASPQPHPLPSAPPRPAQHTTMATRSPA---------LPPETPAAASLS 1787

Query: 137  GTGAREGLRIATPVRVLD---PSRSRCHGPLFASCQLTP---SAGLKTPRQGASLQATPA 190
               A +GL  ATP   L+   PS+     P   S  L     SA + TP   AS+  TP 
Sbjct: 1788 T--ATDGLA-ATPFMSLESTRPSQLLSGLPPDTSLPLAKVGTSAPVATPGPKASVITTPL 1844

Query: 191  KPSLQATPPST 201
            +P     P  T
Sbjct: 1845 QPQATTLPAQT 1855


>gi|239744300 PREDICTED: otogelin isoform 2 [Homo sapiens]
          Length = 2852

 Score = 32.7 bits (73), Expect = 0.23
 Identities = 42/131 (32%), Positives = 53/131 (40%), Gaps = 26/131 (19%)

Query: 85   GVRGSYPPVGGP----PRHLPPGP----RHLRIRSRLPAAARGSGAAPLPPCSAAYTRLS 136
            G  G   P+G P    P  LP  P    +H  + +R PA         LPP + A   LS
Sbjct: 1665 GEAGHSQPMGSPASPQPHPLPSAPPRPAQHTTMATRSPA---------LPPETPAAASLS 1715

Query: 137  GTGAREGLRIATPVRVLD---PSRSRCHGPLFASCQLTP---SAGLKTPRQGASLQATPA 190
               A +GL  ATP   L+   PS+     P   S  L     SA + TP   AS+  TP 
Sbjct: 1716 T--ATDGLA-ATPFMSLESTRPSQLLSGLPPDTSLPLAKVGTSAPVATPGPKASVITTPL 1772

Query: 191  KPSLQATPPST 201
            +P     P  T
Sbjct: 1773 QPQATTLPAQT 1783


>gi|239744298 PREDICTED: otogelin isoform 1 [Homo sapiens]
          Length = 2924

 Score = 32.7 bits (73), Expect = 0.23
 Identities = 42/131 (32%), Positives = 53/131 (40%), Gaps = 26/131 (19%)

Query: 85   GVRGSYPPVGGP----PRHLPPGP----RHLRIRSRLPAAARGSGAAPLPPCSAAYTRLS 136
            G  G   P+G P    P  LP  P    +H  + +R PA         LPP + A   LS
Sbjct: 1737 GEAGHSQPMGSPASPQPHPLPSAPPRPAQHTTMATRSPA---------LPPETPAAASLS 1787

Query: 137  GTGAREGLRIATPVRVLD---PSRSRCHGPLFASCQLTP---SAGLKTPRQGASLQATPA 190
               A +GL  ATP   L+   PS+     P   S  L     SA + TP   AS+  TP 
Sbjct: 1788 T--ATDGLA-ATPFMSLESTRPSQLLSGLPPDTSLPLAKVGTSAPVATPGPKASVITTPL 1844

Query: 191  KPSLQATPPST 201
            +P     P  T
Sbjct: 1845 QPQATTLPAQT 1855


>gi|4505035 lymphotoxin-beta isoform a [Homo sapiens]
          Length = 244

 Score = 32.7 bits (73), Expect = 0.23
 Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 25/114 (21%)

Query: 83  ILGVRGSYPPVGGPPRHLPPGPRHLRIRSRLPAA--ARGSGAAPLPPCSAAYTRLSGTGA 140
           ++G RG  PP GG P+      R + +RS L  A  A G G   L               
Sbjct: 138 LVGYRGRAPPGGGDPQ-----GRSVTLRSSLYRAGGAYGPGTPEL--------------L 178

Query: 141 REGLRIATPVRVLDPSRSRCHGPLFASCQLTPSAGLKTPRQGASLQATPAKPSL 194
            EG    TP  VLDP+R + +GPL+ +       GL   R+G  +    + P +
Sbjct: 179 LEGAETVTP--VLDPARRQGYGPLWYTS--VGFGGLVQLRRGERVYVNISHPDM 228


>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
          Length = 1094

 Score = 32.7 bits (73), Expect = 0.23
 Identities = 43/131 (32%), Positives = 58/131 (44%), Gaps = 25/131 (19%)

Query: 87  RGSYPPVGGPPRHLPPGPRHLRIRSRLP-----AAARGSGAAPLP--PCSAAYTRLSGTG 139
           RG   P G  P  LPP P   + + +LP       + G+GAAP P  P ++    LS  G
Sbjct: 510 RGLAVPDG--PLGLPPKPERKQ-QPQLPRPPTTGGSEGAGAAPCPPNPANSWVPGLSPGG 566

Query: 140 AREGLRIATPVRVLDPSRSRCHGPLFASCQLTPSAGLKTPRQGASLQATPAKPSLQATPP 199
           +R   R  +P R L PS        ++S   TP+     P +G  L   PA P  +A PP
Sbjct: 567 SRRPPR--SPERTLSPSSG------YSSQSGTPT----LPPKG--LAGPPASPG-KAQPP 611

Query: 200 STCGVQSQGAP 210
               V S  +P
Sbjct: 612 KPERVTSLRSP 622


>gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens]
          Length = 502

 Score = 32.3 bits (72), Expect = 0.30
 Identities = 40/134 (29%), Positives = 47/134 (35%), Gaps = 40/134 (29%)

Query: 87  RGSYPPV-GGPPRHLPPGPRHLRIRSRLPAAARGSGAAPLPPCSAAYTRLSGTGAREGLR 145
           RG  PP  GGPP   PP P        LP    G+G  P+PP                  
Sbjct: 357 RGPPPPGRGGPP---PPPPPATGRSGPLPPPPPGAGGPPMPP------------------ 395

Query: 146 IATPVRVLDPSRSRCHGP--------LFASCQLTPSAG----LKTPRQGASLQATPAKP- 192
              P     P  S  +GP        L  +  L P  G    L   RQG  L  TP  P 
Sbjct: 396 ---PPPPPPPPPSSGNGPAPPPLPPALVPAGGLAPGGGRGALLDQIRQGIQLNKTPGAPE 452

Query: 193 --SLQATPPSTCGV 204
             +LQ  P S+ G+
Sbjct: 453 SSALQPPPQSSEGL 466


>gi|239752594 PREDICTED: hypothetical protein, partial [Homo
           sapiens]
          Length = 673

 Score = 32.3 bits (72), Expect = 0.30
 Identities = 36/127 (28%), Positives = 50/127 (39%), Gaps = 9/127 (7%)

Query: 92  PVGGPPRHLPPGPRHLRIRSRLPAAA-----RGSGAAPLPPCSAAYTRLSGTGAREGLRI 146
           P G P    P G       +R P+ A       + +    P  A+ T    T +  G   
Sbjct: 475 PTGSPSTASPTGSPSRASLTRTPSRASLTKMESTASITRTPSRASPTWTPSTASPTGSP- 533

Query: 147 ATPVRVLDPSRSRC-HGPLFASCQLTPSAGLKTPRQGASLQATPAKPSLQATPPST--CG 203
           +T + +  PSR+     P  AS   TPS    T    ASL  TP+   L   PPS    G
Sbjct: 534 STALAMGSPSRAALTRTPSRASLTRTPSRASLTTPSRASLTRTPSTVLLTRMPPSASPTG 593

Query: 204 VQSQGAP 210
           + S+ +P
Sbjct: 594 MPSRTSP 600



 Score = 30.4 bits (67), Expect = 1.1
 Identities = 25/56 (44%), Positives = 28/56 (50%), Gaps = 4/56 (7%)

Query: 146 IATPVRVLDPSR-SRCHGPLFASCQLTPS-AGLKTPRQGASLQATPAKPSLQATPP 199
           +A P R   PSR S    P  AS   TPS A L      ASL  TP++ SL  TPP
Sbjct: 1   MAPPTRT--PSRASPTRTPSTASLTGTPSRASLTGTPSTASLMGTPSRASLTGTPP 54



 Score = 29.6 bits (65), Expect = 2.0
 Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 3/100 (3%)

Query: 114 PAAARGSGAAPLPPCSAAYTRLSGTGAREGLRIATPVRVLDPSRSRCHGPLFASCQLTPS 173
           P       +  + P +A+  R+    +  G+   T +  +D + S    P  AS   TPS
Sbjct: 286 PTGTPSRASLSMTPSTASLMRMLPRASPTGMLSRTSLTKMDSTASISRTPPRASITRTPS 345

Query: 174 AGLKTPRQG-ASLQATPAKPSLQATP--PSTCGVQSQGAP 210
               T +   AS   TP++ S   +P   S  G+ S  +P
Sbjct: 346 RASPTGKPSTASPTGTPSRASPTGSPSTASLTGLSSTASP 385



 Score = 28.5 bits (62), Expect = 4.4
 Identities = 29/79 (36%), Positives = 36/79 (45%), Gaps = 13/79 (16%)

Query: 145 RIATPVRVLDPSR-SRCHGPLFASCQLTPS--AGLKTPRQG--------ASLQATPAKPS 193
           R +T      PSR S    P  AS  +TPS  A L  P +         ASL  TP+  S
Sbjct: 115 RPSTASLTRSPSRASLTTTPSRASLSMTPSTAAALTMPSRASLTRTPPRASLTMTPSTAS 174

Query: 194 LQATPP--STCGVQSQGAP 210
           L  TPP  S  G+ S+ +P
Sbjct: 175 LTRTPPRASPTGMPSRTSP 193



 Score = 27.7 bits (60), Expect = 7.4
 Identities = 33/117 (28%), Positives = 43/117 (36%), Gaps = 14/117 (11%)

Query: 83  ILGVRGSYPPVGGPPRHLPPGPRHLRIRSRLPAAARGSGAAPLPPCSAAYTRLSGTGARE 142
           + G+  +  P G PPR  P G       +R P  A  +G             LS T   +
Sbjct: 376 LTGLSSTASPTGTPPRASPTGTPSTASLTRKPPRASPTG------------MLSRTSITK 423

Query: 143 GLRIATPVRVLDPSRSRCHGPLFASCQLTPSAGLKTPRQG-ASLQATPAKPSLQATP 198
               A+P R   P  S    P  AS   TPS    T  Q  AS   +P+  S   +P
Sbjct: 424 MDSTASPTRT-PPRASPTGTPPRASPTGTPSRASPTGTQSTASPTGSPSTASPTGSP 479


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.139    0.441 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,219,331
Number of Sequences: 37866
Number of extensions: 586567
Number of successful extensions: 3203
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 190
Number of HSP's that attempted gapping in prelim test: 2985
Number of HSP's gapped (non-prelim): 378
length of query: 211
length of database: 18,247,518
effective HSP length: 98
effective length of query: 113
effective length of database: 14,536,650
effective search space: 1642641450
effective search space used: 1642641450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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