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Search of human proteins with 239752010
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752010 PREDICTED: hypothetical protein XP_002348066 [Homo
sapiens]
(211 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752010 PREDICTED: hypothetical protein XP_002348066 [Homo ... 429 e-121
gi|239746495 PREDICTED: hypothetical protein XP_002343746 [Homo ... 429 e-121
gi|239757493 PREDICTED: hypothetical protein [Homo sapiens] 426 e-120
gi|22094135 DOT1-like, histone H3 methyltransferase [Homo sapiens] 38 0.007
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 37 0.016
gi|239741585 PREDICTED: hypothetical protein XP_002342243 [Homo ... 36 0.027
gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens] 35 0.036
gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens] 35 0.047
gi|239750672 PREDICTED: hypothetical protein [Homo sapiens] 35 0.061
gi|239744982 PREDICTED: hypothetical protein [Homo sapiens] 35 0.061
gi|18079216 CASK interacting protein 1 [Homo sapiens] 34 0.079
gi|239756174 PREDICTED: hypothetical protein [Homo sapiens] 34 0.10
gi|109715839 adherens junction associated protein 1 [Homo sapiens] 33 0.14
gi|9055278 adherens junction associated protein 1 [Homo sapiens] 33 0.14
gi|114431244 von Willebrand factor C and EGF domains [Homo sapiens] 33 0.14
gi|239754368 PREDICTED: hypothetical protein [Homo sapiens] 33 0.18
gi|239748915 PREDICTED: hypothetical protein XP_002346855 [Homo ... 33 0.18
gi|239742939 PREDICTED: hypothetical protein XP_002342693 [Homo ... 33 0.18
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 33 0.18
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 33 0.18
gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens] 33 0.23
gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens] 33 0.23
gi|239749989 PREDICTED: otogelin isoform 2 [Homo sapiens] 33 0.23
gi|239749987 PREDICTED: otogelin isoform 1 [Homo sapiens] 33 0.23
gi|239744300 PREDICTED: otogelin isoform 2 [Homo sapiens] 33 0.23
gi|239744298 PREDICTED: otogelin isoform 1 [Homo sapiens] 33 0.23
gi|4505035 lymphotoxin-beta isoform a [Homo sapiens] 33 0.23
gi|112734870 hypothetical protein LOC57648 [Homo sapiens] 33 0.23
gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens] 32 0.30
gi|239752594 PREDICTED: hypothetical protein, partial [Homo sapi... 32 0.30
>gi|239752010 PREDICTED: hypothetical protein XP_002348066 [Homo
sapiens]
Length = 211
Score = 429 bits (1104), Expect = e-121
Identities = 211/211 (100%), Positives = 211/211 (100%)
Query: 1 MASGSDSSSDGLWYSLRFLFFMGLRSSEALGCDLLPLPLLEQLRAAIIRGTKIWTRGLVR 60
MASGSDSSSDGLWYSLRFLFFMGLRSSEALGCDLLPLPLLEQLRAAIIRGTKIWTRGLVR
Sbjct: 1 MASGSDSSSDGLWYSLRFLFFMGLRSSEALGCDLLPLPLLEQLRAAIIRGTKIWTRGLVR 60
Query: 61 PARLALTGAIILWGVLIGIFWRILGVRGSYPPVGGPPRHLPPGPRHLRIRSRLPAAARGS 120
PARLALTGAIILWGVLIGIFWRILGVRGSYPPVGGPPRHLPPGPRHLRIRSRLPAAARGS
Sbjct: 61 PARLALTGAIILWGVLIGIFWRILGVRGSYPPVGGPPRHLPPGPRHLRIRSRLPAAARGS 120
Query: 121 GAAPLPPCSAAYTRLSGTGAREGLRIATPVRVLDPSRSRCHGPLFASCQLTPSAGLKTPR 180
GAAPLPPCSAAYTRLSGTGAREGLRIATPVRVLDPSRSRCHGPLFASCQLTPSAGLKTPR
Sbjct: 121 GAAPLPPCSAAYTRLSGTGAREGLRIATPVRVLDPSRSRCHGPLFASCQLTPSAGLKTPR 180
Query: 181 QGASLQATPAKPSLQATPPSTCGVQSQGAPL 211
QGASLQATPAKPSLQATPPSTCGVQSQGAPL
Sbjct: 181 QGASLQATPAKPSLQATPPSTCGVQSQGAPL 211
>gi|239746495 PREDICTED: hypothetical protein XP_002343746 [Homo
sapiens]
Length = 211
Score = 429 bits (1104), Expect = e-121
Identities = 211/211 (100%), Positives = 211/211 (100%)
Query: 1 MASGSDSSSDGLWYSLRFLFFMGLRSSEALGCDLLPLPLLEQLRAAIIRGTKIWTRGLVR 60
MASGSDSSSDGLWYSLRFLFFMGLRSSEALGCDLLPLPLLEQLRAAIIRGTKIWTRGLVR
Sbjct: 1 MASGSDSSSDGLWYSLRFLFFMGLRSSEALGCDLLPLPLLEQLRAAIIRGTKIWTRGLVR 60
Query: 61 PARLALTGAIILWGVLIGIFWRILGVRGSYPPVGGPPRHLPPGPRHLRIRSRLPAAARGS 120
PARLALTGAIILWGVLIGIFWRILGVRGSYPPVGGPPRHLPPGPRHLRIRSRLPAAARGS
Sbjct: 61 PARLALTGAIILWGVLIGIFWRILGVRGSYPPVGGPPRHLPPGPRHLRIRSRLPAAARGS 120
Query: 121 GAAPLPPCSAAYTRLSGTGAREGLRIATPVRVLDPSRSRCHGPLFASCQLTPSAGLKTPR 180
GAAPLPPCSAAYTRLSGTGAREGLRIATPVRVLDPSRSRCHGPLFASCQLTPSAGLKTPR
Sbjct: 121 GAAPLPPCSAAYTRLSGTGAREGLRIATPVRVLDPSRSRCHGPLFASCQLTPSAGLKTPR 180
Query: 181 QGASLQATPAKPSLQATPPSTCGVQSQGAPL 211
QGASLQATPAKPSLQATPPSTCGVQSQGAPL
Sbjct: 181 QGASLQATPAKPSLQATPPSTCGVQSQGAPL 211
>gi|239757493 PREDICTED: hypothetical protein [Homo sapiens]
Length = 211
Score = 426 bits (1096), Expect = e-120
Identities = 210/211 (99%), Positives = 210/211 (99%)
Query: 1 MASGSDSSSDGLWYSLRFLFFMGLRSSEALGCDLLPLPLLEQLRAAIIRGTKIWTRGLVR 60
MASGSDSSSDGLWYSLRFLFFMGLRSSEALGCDLLPLPLLEQLRAAIIRGTKIWTRGLVR
Sbjct: 1 MASGSDSSSDGLWYSLRFLFFMGLRSSEALGCDLLPLPLLEQLRAAIIRGTKIWTRGLVR 60
Query: 61 PARLALTGAIILWGVLIGIFWRILGVRGSYPPVGGPPRHLPPGPRHLRIRSRLPAAARGS 120
PARLALTGAIILWGVLIGIFWRIL VRGSYPPVGGPPRHLPPGPRHLRIRSRLPAAARGS
Sbjct: 61 PARLALTGAIILWGVLIGIFWRILRVRGSYPPVGGPPRHLPPGPRHLRIRSRLPAAARGS 120
Query: 121 GAAPLPPCSAAYTRLSGTGAREGLRIATPVRVLDPSRSRCHGPLFASCQLTPSAGLKTPR 180
GAAPLPPCSAAYTRLSGTGAREGLRIATPVRVLDPSRSRCHGPLFASCQLTPSAGLKTPR
Sbjct: 121 GAAPLPPCSAAYTRLSGTGAREGLRIATPVRVLDPSRSRCHGPLFASCQLTPSAGLKTPR 180
Query: 181 QGASLQATPAKPSLQATPPSTCGVQSQGAPL 211
QGASLQATPAKPSLQATPPSTCGVQSQGAPL
Sbjct: 181 QGASLQATPAKPSLQATPPSTCGVQSQGAPL 211
>gi|22094135 DOT1-like, histone H3 methyltransferase [Homo sapiens]
Length = 1537
Score = 37.7 bits (86), Expect = 0.007
Identities = 47/154 (30%), Positives = 59/154 (38%), Gaps = 20/154 (12%)
Query: 78 GIFWRILGVRGSYPP----VGGPPRHLPPGPRH-LRIRSRLPAAARG----SGAAPLPPC 128
G + +G R S P + P LP P H L RL AA+G + LP
Sbjct: 972 GSLFATVGSRSSTPQHPLLLAQPRNSLPASPAHQLSSSPRLGGAAQGPLPEASKGDLPSD 1031
Query: 129 SAAYTRLSGTGAREGLRIATPVRVLDPSRSRCHGPLFASCQ--LTPSAGLKTPRQGASLQ 186
S S R I T S S H PL AS + PS G + R+G +
Sbjct: 1032 SGFSDPESEAKRRIVFTITTGAGSAKQSPSSKHSPLTASARGDCVPSHGQDSRRRGRRKR 1091
Query: 187 ATPAKPSLQA-------TPPSTCGV--QSQGAPL 211
A+ PSL A PS G+ Q G+PL
Sbjct: 1092 ASAGTPSLSAGVSPKRRALPSVAGLFTQPSGSPL 1125
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 36.6 bits (83), Expect = 0.016
Identities = 29/104 (27%), Positives = 44/104 (42%), Gaps = 14/104 (13%)
Query: 96 PPRHLPPGPRHLRIRSRLPAAARGSGAAPLPPCSAAYTRLSGTGAREGLRIATPVRVLDP 155
PPR +PP PRH R RS + R S + S++ +R + R ++P P
Sbjct: 328 PPRRMPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSP-----P 382
Query: 156 SRSRCHGPLFASCQLTPSAGLKTPRQGASLQATPAKPSLQATPP 199
++R +L+PSA R S ATP + + P
Sbjct: 383 RKTR---------RLSPSASPPRRRHRPSPPATPPPKTRHSPTP 417
>gi|239741585 PREDICTED: hypothetical protein XP_002342243 [Homo
sapiens]
Length = 439
Score = 35.8 bits (81), Expect = 0.027
Identities = 44/148 (29%), Positives = 59/148 (39%), Gaps = 23/148 (15%)
Query: 85 GVRGSYPPVGGPPRHLP----PGPRHLRIRSRLPAAARGSGAAPL------PPCSAAYTR 134
G+ G G P P PG R LR+ S+LP+ AAPL P ++R
Sbjct: 162 GLVGKQREGGNGPWRAPVFRLPGAR-LRLSSQLPSPTTLPRAAPLTPYRPGSPSPRGHSR 220
Query: 135 L-SGTGAREGLRI-ATPVRVLDPSRSRCH-----GPLFASCQLTPSAGLKTPRQGASLQA 187
L S R LR+ A P+ + CH G SC+ +P Q L
Sbjct: 221 LRSRPPTRAQLRVGANPLSPVPARLRGCHSVRPEGGGVRSCRTLGCCPPTSPHQPPRLPV 280
Query: 188 TP-----AKPSLQATPPSTCGVQSQGAP 210
TP A PSLQ+ P+ G + +P
Sbjct: 281 TPVPQSVALPSLQSARPAAAGAAPRLSP 308
>gi|4507869 vasodilator-stimulated phosphoprotein [Homo sapiens]
Length = 380
Score = 35.4 bits (80), Expect = 0.036
Identities = 26/62 (41%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
Query: 88 GSYPPVGGPPRHLPPGPRHLRIRSRLPAAARGSGAA--PLPPCSAAYTRLSGTGAREGLR 145
G PP G PP PP P L S +PAAA G+G P PP AA G GL
Sbjct: 169 GPPPPPGPPPPPGPPPPPGLP-PSGVPAAAHGAGGGPPPAPPLPAAQGPGGGGAGAPGLA 227
Query: 146 IA 147
A
Sbjct: 228 AA 229
>gi|239753784 PREDICTED: NK1 homeobox 1 [Homo sapiens]
Length = 814
Score = 35.0 bits (79), Expect = 0.047
Identities = 28/72 (38%), Positives = 34/72 (47%), Gaps = 12/72 (16%)
Query: 77 IGIFWRILGVRGSYP---PVGGPPRHLPPGPRHLRIRSRLPAAARGSGAAPLPPCSAAYT 133
+G R+ R + P PV GPP PR +RS+L A A G AP PP A
Sbjct: 328 LGSGLRVCSSRPAAPSVCPVRGPP------PRPGTVRSQLGARANEGGGAPRPPAGA--- 378
Query: 134 RLSGTGAREGLR 145
R+ G AR LR
Sbjct: 379 RVFGVWARGRLR 390
>gi|239750672 PREDICTED: hypothetical protein [Homo sapiens]
Length = 627
Score = 34.7 bits (78), Expect = 0.061
Identities = 33/109 (30%), Positives = 46/109 (42%), Gaps = 10/109 (9%)
Query: 102 PGPRHLRIRSRLPAAARGSGAAPLPPCSAAYTRLSGTGAREGLRIATPVRVLDPSRSRCH 161
PG R +R+ + L A A L C A R+ E R+ TP L P+ +
Sbjct: 140 PG-RSMRVATGLYEAYEAERRAKLQQCRAERERIM---REEKRRLFTP---LSPAAAAAA 192
Query: 162 GPLFASCQLTPSAGLKTPRQGASLQATPAKPSLQATPPSTCGVQSQGAP 210
AS PSAG + ASL A+PA + + PS ++Q P
Sbjct: 193 AAAAASA---PSAGSSSSCSSASLPASPAPRAARKASPSPSSARTQPPP 238
>gi|239744982 PREDICTED: hypothetical protein [Homo sapiens]
Length = 627
Score = 34.7 bits (78), Expect = 0.061
Identities = 33/109 (30%), Positives = 46/109 (42%), Gaps = 10/109 (9%)
Query: 102 PGPRHLRIRSRLPAAARGSGAAPLPPCSAAYTRLSGTGAREGLRIATPVRVLDPSRSRCH 161
PG R +R+ + L A A L C A R+ E R+ TP L P+ +
Sbjct: 140 PG-RSMRVATGLYEAYEAERRAKLQQCRAERERIM---REEKRRLFTP---LSPAAAAAA 192
Query: 162 GPLFASCQLTPSAGLKTPRQGASLQATPAKPSLQATPPSTCGVQSQGAP 210
AS PSAG + ASL A+PA + + PS ++Q P
Sbjct: 193 AAAAASA---PSAGSSSSCSSASLPASPAPRAARKASPSPSSARTQPPP 238
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 34.3 bits (77), Expect = 0.079
Identities = 30/107 (28%), Positives = 41/107 (38%), Gaps = 17/107 (15%)
Query: 88 GSYPPVGGPPRHLPPGPRHLRIRSRLPAAARGSGAAPLPPCS--AAYTRLSGTGAREGLR 145
G+ PPV P P P+ ++ + LP+ + G AP P AA + GT G
Sbjct: 1265 GTPPPVSPKPPPPPTAPKPVKAVAGLPSGSAGPSPAPSPARQPPAALAKPPGTPPSLG-- 1322
Query: 146 IATPVRVLDPSRSRCHGPLFASCQLTPSAGLKTPRQGASLQATPAKP 192
A+P + P H P K PR A+ A A P
Sbjct: 1323 -ASPAKPPSPGAPALHVP------------AKPPRAAAAAAAAAAAP 1356
Score = 27.7 bits (60), Expect = 7.4
Identities = 37/139 (26%), Positives = 50/139 (35%), Gaps = 31/139 (22%)
Query: 91 PPVGGPPR---HLPPGPR---HLRIRSRLPAAARGSGAAPLPPCSAAYTRLS------GT 138
PP PP HLPP P R ++ P + + P+P + T S G
Sbjct: 1196 PPAEPPPTDLAHLPPLPPPEGEARKPAKPPVSPKPVLTQPVPKLQGSPTPTSKKVPLPGP 1255
Query: 139 GAREGLRI-----------------ATPVRVLD--PSRSRCHGPLFASCQLTPSAGLKTP 179
G+ E R PV+ + PS S P + + P+A K P
Sbjct: 1256 GSPEVKRAHGTPPPVSPKPPPPPTAPKPVKAVAGLPSGSAGPSPAPSPARQPPAALAKPP 1315
Query: 180 RQGASLQATPAKPSLQATP 198
SL A+PAKP P
Sbjct: 1316 GTPPSLGASPAKPPSPGAP 1334
Score = 27.3 bits (59), Expect = 9.7
Identities = 13/21 (61%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 87 RGSYPPVGGPPRH-LPPGPRH 106
R S PPV G PR LPPG H
Sbjct: 753 RASVPPVPGKPRQVLPPGTSH 773
>gi|239756174 PREDICTED: hypothetical protein [Homo sapiens]
Length = 625
Score = 33.9 bits (76), Expect = 0.10
Identities = 32/109 (29%), Positives = 46/109 (42%), Gaps = 12/109 (11%)
Query: 102 PGPRHLRIRSRLPAAARGSGAAPLPPCSAAYTRLSGTGAREGLRIATPVRVLDPSRSRCH 161
PG R +R+ + L A A L C A R+ E R+ TP L P+ +
Sbjct: 140 PG-RSMRVATGLYEAYEAERRAKLQQCRAERDRIM---REEKRRLFTP---LSPAAAAA- 191
Query: 162 GPLFASCQLTPSAGLKTPRQGASLQATPAKPSLQATPPSTCGVQSQGAP 210
A+ PSAG + ASL A+PA + + PS ++Q P
Sbjct: 192 ----AAAASAPSAGSSSSCSSASLPASPAPRAARKASPSPSSARTQPPP 236
>gi|109715839 adherens junction associated protein 1 [Homo sapiens]
Length = 411
Score = 33.5 bits (75), Expect = 0.14
Identities = 32/114 (28%), Positives = 42/114 (36%), Gaps = 21/114 (18%)
Query: 97 PRHLPPGPRHLRIRSRLPAAARGSGAAPLPPCSAAYTRLSGTGAREGLRIATPVRVLDPS 156
PR P PR RS PA +P PP R+ G ++ P
Sbjct: 54 PRSPPRPPRLWSFRSGQPARVPAPVWSPRPP---RVERIHG-------------QMQMPR 97
Query: 157 RSRCHGPLFASCQLTPSAGLKTPRQGASLQATPAKPSLQATPPSTCGVQSQGAP 210
R H P + L P AGL P A + PSL ++ S+ + GAP
Sbjct: 98 ARRAHRPRDQAAALVPKAGLAKPPAAAK-----SSPSLASSSSSSSSAVAGGAP 146
>gi|9055278 adherens junction associated protein 1 [Homo sapiens]
Length = 411
Score = 33.5 bits (75), Expect = 0.14
Identities = 32/114 (28%), Positives = 42/114 (36%), Gaps = 21/114 (18%)
Query: 97 PRHLPPGPRHLRIRSRLPAAARGSGAAPLPPCSAAYTRLSGTGAREGLRIATPVRVLDPS 156
PR P PR RS PA +P PP R+ G ++ P
Sbjct: 54 PRSPPRPPRLWSFRSGQPARVPAPVWSPRPP---RVERIHG-------------QMQMPR 97
Query: 157 RSRCHGPLFASCQLTPSAGLKTPRQGASLQATPAKPSLQATPPSTCGVQSQGAP 210
R H P + L P AGL P A + PSL ++ S+ + GAP
Sbjct: 98 ARRAHRPRDQAAALVPKAGLAKPPAAAK-----SSPSLASSSSSSSSAVAGGAP 146
>gi|114431244 von Willebrand factor C and EGF domains [Homo sapiens]
Length = 955
Score = 33.5 bits (75), Expect = 0.14
Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 13/124 (10%)
Query: 84 LGVRGSYPPVGGPPRHLPPGPRHLRIRSRLPAAARGSGAAPLPPCSAAYTRLSGTGAR-- 141
LG+ ++P G L PGP LP A+ G AP PP S +GA+
Sbjct: 828 LGLTATFPGEPGASPRLSPGPSTPPGAPTLPLASPG---APQPPPVTPERSFSASGAQIV 884
Query: 142 --------EGLRIATPVRVLDPSRSRCHGPLFASCQLTPSAGLKTPRQGASLQATPAKPS 193
L A+ + ++DPS S+ L L+P+ + A+ P +P
Sbjct: 885 SRWPPLPGTLLTEASALSMMDPSPSKTPITLLGPRVLSPTTSRLSTALAATTHPGPQQPP 944
Query: 194 LQAT 197
+ A+
Sbjct: 945 VGAS 948
>gi|239754368 PREDICTED: hypothetical protein [Homo sapiens]
Length = 336
Score = 33.1 bits (74), Expect = 0.18
Identities = 37/119 (31%), Positives = 42/119 (35%), Gaps = 10/119 (8%)
Query: 89 SYPPVGGPPRHLPPGPRHLRIRSRLPAAARGSGAAPLPPCSAAYTRLSGTGAREGLRIAT 148
S PP P R P PR R P AA G G LPPC RL +G R
Sbjct: 178 SRPPHPAPTR---PTPRVQGGFGREPRAAAGQGRGWLPPCR---LRLQDSGPRRRPGPGP 231
Query: 149 PVRVLDPSRSRCHGPLFASCQLTPSAGLKTPRQG----ASLQATPAKPSLQATPPSTCG 203
P SR P A T +G +G +S A+ A P P CG
Sbjct: 232 PALRSGRSRGSGRPPDSAGAAGTGGSGWAAALRGWPAPSSFAASSALPEECLPPRRGCG 290
>gi|239748915 PREDICTED: hypothetical protein XP_002346855 [Homo
sapiens]
Length = 336
Score = 33.1 bits (74), Expect = 0.18
Identities = 37/119 (31%), Positives = 42/119 (35%), Gaps = 10/119 (8%)
Query: 89 SYPPVGGPPRHLPPGPRHLRIRSRLPAAARGSGAAPLPPCSAAYTRLSGTGAREGLRIAT 148
S PP P R P PR R P AA G G LPPC RL +G R
Sbjct: 178 SRPPHPAPTR---PTPRVQGGFGREPRAAAGQGRGWLPPCR---LRLQDSGPRRRPGPGP 231
Query: 149 PVRVLDPSRSRCHGPLFASCQLTPSAGLKTPRQG----ASLQATPAKPSLQATPPSTCG 203
P SR P A T +G +G +S A+ A P P CG
Sbjct: 232 PALRSGRSRGSGRPPDSAGAAGTGGSGWAAALRGWPAPSSFAASSALPEECLPPRRGCG 290
>gi|239742939 PREDICTED: hypothetical protein XP_002342693 [Homo
sapiens]
Length = 321
Score = 33.1 bits (74), Expect = 0.18
Identities = 37/119 (31%), Positives = 42/119 (35%), Gaps = 10/119 (8%)
Query: 89 SYPPVGGPPRHLPPGPRHLRIRSRLPAAARGSGAAPLPPCSAAYTRLSGTGAREGLRIAT 148
S PP P R P PR R P AA G G LPPC RL +G R
Sbjct: 178 SRPPHPAPTR---PTPRVQGGFGREPRAAAGQGRGWLPPCR---LRLQDSGPRRRPGPGP 231
Query: 149 PVRVLDPSRSRCHGPLFASCQLTPSAGLKTPRQG----ASLQATPAKPSLQATPPSTCG 203
P SR P A T +G +G +S A+ A P P CG
Sbjct: 232 PALRSGRSRGSGRPPDSAGAAGTGGSGWAAALRGWPAPSSFAASSALPEECLPPRRGCG 290
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 33.1 bits (74), Expect = 0.18
Identities = 37/123 (30%), Positives = 47/123 (38%), Gaps = 18/123 (14%)
Query: 91 PPVGGPPRHLPPGP-----------RHLRIRSR---LPAAARGSGAAPLPPCSAAYTRLS 136
PP P LPP R+L + S LP+ R SG P PP +
Sbjct: 312 PPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGR-SGPLPPPPSERPPPPVR 370
Query: 137 GTGAREGLRIATPVRVLDPSRSRCHGPLFASCQLTPSAGLKTPRQGASLQATPAKPSLQA 196
R G P + S SR L A+ QL +G+ +PR G P +PS A
Sbjct: 371 DPPGRSGPLPPPPPVSRNGSTSRA---LPATPQLPSRSGVDSPRSGPRPPLPPDRPSAGA 427
Query: 197 TPP 199
PP
Sbjct: 428 PPP 430
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 33.1 bits (74), Expect = 0.18
Identities = 37/123 (30%), Positives = 47/123 (38%), Gaps = 18/123 (14%)
Query: 91 PPVGGPPRHLPPGP-----------RHLRIRSR---LPAAARGSGAAPLPPCSAAYTRLS 136
PP P LPP R+L + S LP+ R SG P PP +
Sbjct: 312 PPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGR-SGPLPPPPSERPPPPVR 370
Query: 137 GTGAREGLRIATPVRVLDPSRSRCHGPLFASCQLTPSAGLKTPRQGASLQATPAKPSLQA 196
R G P + S SR L A+ QL +G+ +PR G P +PS A
Sbjct: 371 DPPGRSGPLPPPPPVSRNGSTSRA---LPATPQLPSRSGVDSPRSGPRPPLPPDRPSAGA 427
Query: 197 TPP 199
PP
Sbjct: 428 PPP 430
>gi|239755545 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2852
Score = 32.7 bits (73), Expect = 0.23
Identities = 42/131 (32%), Positives = 53/131 (40%), Gaps = 26/131 (19%)
Query: 85 GVRGSYPPVGGP----PRHLPPGP----RHLRIRSRLPAAARGSGAAPLPPCSAAYTRLS 136
G G P+G P P LP P +H + +R PA LPP + A LS
Sbjct: 1665 GEAGHSQPMGSPASPQPHPLPSAPPRPAQHTTMATRSPA---------LPPETPAAASLS 1715
Query: 137 GTGAREGLRIATPVRVLD---PSRSRCHGPLFASCQLTP---SAGLKTPRQGASLQATPA 190
A +GL ATP L+ PS+ P S L SA + TP AS+ TP
Sbjct: 1716 T--ATDGLA-ATPFMSLESTRPSQLLSGLPPDTSLPLAKVGTSAPVATPGPKASVITTPL 1772
Query: 191 KPSLQATPPST 201
+P P T
Sbjct: 1773 QPQATTLPAQT 1783
>gi|239755543 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2924
Score = 32.7 bits (73), Expect = 0.23
Identities = 42/131 (32%), Positives = 53/131 (40%), Gaps = 26/131 (19%)
Query: 85 GVRGSYPPVGGP----PRHLPPGP----RHLRIRSRLPAAARGSGAAPLPPCSAAYTRLS 136
G G P+G P P LP P +H + +R PA LPP + A LS
Sbjct: 1737 GEAGHSQPMGSPASPQPHPLPSAPPRPAQHTTMATRSPA---------LPPETPAAASLS 1787
Query: 137 GTGAREGLRIATPVRVLD---PSRSRCHGPLFASCQLTP---SAGLKTPRQGASLQATPA 190
A +GL ATP L+ PS+ P S L SA + TP AS+ TP
Sbjct: 1788 T--ATDGLA-ATPFMSLESTRPSQLLSGLPPDTSLPLAKVGTSAPVATPGPKASVITTPL 1844
Query: 191 KPSLQATPPST 201
+P P T
Sbjct: 1845 QPQATTLPAQT 1855
>gi|239749989 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2852
Score = 32.7 bits (73), Expect = 0.23
Identities = 42/131 (32%), Positives = 53/131 (40%), Gaps = 26/131 (19%)
Query: 85 GVRGSYPPVGGP----PRHLPPGP----RHLRIRSRLPAAARGSGAAPLPPCSAAYTRLS 136
G G P+G P P LP P +H + +R PA LPP + A LS
Sbjct: 1665 GEAGHSQPMGSPASPQPHPLPSAPPRPAQHTTMATRSPA---------LPPETPAAASLS 1715
Query: 137 GTGAREGLRIATPVRVLD---PSRSRCHGPLFASCQLTP---SAGLKTPRQGASLQATPA 190
A +GL ATP L+ PS+ P S L SA + TP AS+ TP
Sbjct: 1716 T--ATDGLA-ATPFMSLESTRPSQLLSGLPPDTSLPLAKVGTSAPVATPGPKASVITTPL 1772
Query: 191 KPSLQATPPST 201
+P P T
Sbjct: 1773 QPQATTLPAQT 1783
>gi|239749987 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2924
Score = 32.7 bits (73), Expect = 0.23
Identities = 42/131 (32%), Positives = 53/131 (40%), Gaps = 26/131 (19%)
Query: 85 GVRGSYPPVGGP----PRHLPPGP----RHLRIRSRLPAAARGSGAAPLPPCSAAYTRLS 136
G G P+G P P LP P +H + +R PA LPP + A LS
Sbjct: 1737 GEAGHSQPMGSPASPQPHPLPSAPPRPAQHTTMATRSPA---------LPPETPAAASLS 1787
Query: 137 GTGAREGLRIATPVRVLD---PSRSRCHGPLFASCQLTP---SAGLKTPRQGASLQATPA 190
A +GL ATP L+ PS+ P S L SA + TP AS+ TP
Sbjct: 1788 T--ATDGLA-ATPFMSLESTRPSQLLSGLPPDTSLPLAKVGTSAPVATPGPKASVITTPL 1844
Query: 191 KPSLQATPPST 201
+P P T
Sbjct: 1845 QPQATTLPAQT 1855
>gi|239744300 PREDICTED: otogelin isoform 2 [Homo sapiens]
Length = 2852
Score = 32.7 bits (73), Expect = 0.23
Identities = 42/131 (32%), Positives = 53/131 (40%), Gaps = 26/131 (19%)
Query: 85 GVRGSYPPVGGP----PRHLPPGP----RHLRIRSRLPAAARGSGAAPLPPCSAAYTRLS 136
G G P+G P P LP P +H + +R PA LPP + A LS
Sbjct: 1665 GEAGHSQPMGSPASPQPHPLPSAPPRPAQHTTMATRSPA---------LPPETPAAASLS 1715
Query: 137 GTGAREGLRIATPVRVLD---PSRSRCHGPLFASCQLTP---SAGLKTPRQGASLQATPA 190
A +GL ATP L+ PS+ P S L SA + TP AS+ TP
Sbjct: 1716 T--ATDGLA-ATPFMSLESTRPSQLLSGLPPDTSLPLAKVGTSAPVATPGPKASVITTPL 1772
Query: 191 KPSLQATPPST 201
+P P T
Sbjct: 1773 QPQATTLPAQT 1783
>gi|239744298 PREDICTED: otogelin isoform 1 [Homo sapiens]
Length = 2924
Score = 32.7 bits (73), Expect = 0.23
Identities = 42/131 (32%), Positives = 53/131 (40%), Gaps = 26/131 (19%)
Query: 85 GVRGSYPPVGGP----PRHLPPGP----RHLRIRSRLPAAARGSGAAPLPPCSAAYTRLS 136
G G P+G P P LP P +H + +R PA LPP + A LS
Sbjct: 1737 GEAGHSQPMGSPASPQPHPLPSAPPRPAQHTTMATRSPA---------LPPETPAAASLS 1787
Query: 137 GTGAREGLRIATPVRVLD---PSRSRCHGPLFASCQLTP---SAGLKTPRQGASLQATPA 190
A +GL ATP L+ PS+ P S L SA + TP AS+ TP
Sbjct: 1788 T--ATDGLA-ATPFMSLESTRPSQLLSGLPPDTSLPLAKVGTSAPVATPGPKASVITTPL 1844
Query: 191 KPSLQATPPST 201
+P P T
Sbjct: 1845 QPQATTLPAQT 1855
>gi|4505035 lymphotoxin-beta isoform a [Homo sapiens]
Length = 244
Score = 32.7 bits (73), Expect = 0.23
Identities = 34/114 (29%), Positives = 48/114 (42%), Gaps = 25/114 (21%)
Query: 83 ILGVRGSYPPVGGPPRHLPPGPRHLRIRSRLPAA--ARGSGAAPLPPCSAAYTRLSGTGA 140
++G RG PP GG P+ R + +RS L A A G G L
Sbjct: 138 LVGYRGRAPPGGGDPQ-----GRSVTLRSSLYRAGGAYGPGTPEL--------------L 178
Query: 141 REGLRIATPVRVLDPSRSRCHGPLFASCQLTPSAGLKTPRQGASLQATPAKPSL 194
EG TP VLDP+R + +GPL+ + GL R+G + + P +
Sbjct: 179 LEGAETVTP--VLDPARRQGYGPLWYTS--VGFGGLVQLRRGERVYVNISHPDM 228
>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
Length = 1094
Score = 32.7 bits (73), Expect = 0.23
Identities = 43/131 (32%), Positives = 58/131 (44%), Gaps = 25/131 (19%)
Query: 87 RGSYPPVGGPPRHLPPGPRHLRIRSRLP-----AAARGSGAAPLP--PCSAAYTRLSGTG 139
RG P G P LPP P + + +LP + G+GAAP P P ++ LS G
Sbjct: 510 RGLAVPDG--PLGLPPKPERKQ-QPQLPRPPTTGGSEGAGAAPCPPNPANSWVPGLSPGG 566
Query: 140 AREGLRIATPVRVLDPSRSRCHGPLFASCQLTPSAGLKTPRQGASLQATPAKPSLQATPP 199
+R R +P R L PS ++S TP+ P +G L PA P +A PP
Sbjct: 567 SRRPPR--SPERTLSPSSG------YSSQSGTPT----LPPKG--LAGPPASPG-KAQPP 611
Query: 200 STCGVQSQGAP 210
V S +P
Sbjct: 612 KPERVTSLRSP 622
>gi|4507909 Wiskott-Aldrich syndrome protein [Homo sapiens]
Length = 502
Score = 32.3 bits (72), Expect = 0.30
Identities = 40/134 (29%), Positives = 47/134 (35%), Gaps = 40/134 (29%)
Query: 87 RGSYPPV-GGPPRHLPPGPRHLRIRSRLPAAARGSGAAPLPPCSAAYTRLSGTGAREGLR 145
RG PP GGPP PP P LP G+G P+PP
Sbjct: 357 RGPPPPGRGGPP---PPPPPATGRSGPLPPPPPGAGGPPMPP------------------ 395
Query: 146 IATPVRVLDPSRSRCHGP--------LFASCQLTPSAG----LKTPRQGASLQATPAKP- 192
P P S +GP L + L P G L RQG L TP P
Sbjct: 396 ---PPPPPPPPPSSGNGPAPPPLPPALVPAGGLAPGGGRGALLDQIRQGIQLNKTPGAPE 452
Query: 193 --SLQATPPSTCGV 204
+LQ P S+ G+
Sbjct: 453 SSALQPPPQSSEGL 466
>gi|239752594 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 673
Score = 32.3 bits (72), Expect = 0.30
Identities = 36/127 (28%), Positives = 50/127 (39%), Gaps = 9/127 (7%)
Query: 92 PVGGPPRHLPPGPRHLRIRSRLPAAA-----RGSGAAPLPPCSAAYTRLSGTGAREGLRI 146
P G P P G +R P+ A + + P A+ T T + G
Sbjct: 475 PTGSPSTASPTGSPSRASLTRTPSRASLTKMESTASITRTPSRASPTWTPSTASPTGSP- 533
Query: 147 ATPVRVLDPSRSRC-HGPLFASCQLTPSAGLKTPRQGASLQATPAKPSLQATPPST--CG 203
+T + + PSR+ P AS TPS T ASL TP+ L PPS G
Sbjct: 534 STALAMGSPSRAALTRTPSRASLTRTPSRASLTTPSRASLTRTPSTVLLTRMPPSASPTG 593
Query: 204 VQSQGAP 210
+ S+ +P
Sbjct: 594 MPSRTSP 600
Score = 30.4 bits (67), Expect = 1.1
Identities = 25/56 (44%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 146 IATPVRVLDPSR-SRCHGPLFASCQLTPS-AGLKTPRQGASLQATPAKPSLQATPP 199
+A P R PSR S P AS TPS A L ASL TP++ SL TPP
Sbjct: 1 MAPPTRT--PSRASPTRTPSTASLTGTPSRASLTGTPSTASLMGTPSRASLTGTPP 54
Score = 29.6 bits (65), Expect = 2.0
Identities = 25/100 (25%), Positives = 41/100 (41%), Gaps = 3/100 (3%)
Query: 114 PAAARGSGAAPLPPCSAAYTRLSGTGAREGLRIATPVRVLDPSRSRCHGPLFASCQLTPS 173
P + + P +A+ R+ + G+ T + +D + S P AS TPS
Sbjct: 286 PTGTPSRASLSMTPSTASLMRMLPRASPTGMLSRTSLTKMDSTASISRTPPRASITRTPS 345
Query: 174 AGLKTPRQG-ASLQATPAKPSLQATP--PSTCGVQSQGAP 210
T + AS TP++ S +P S G+ S +P
Sbjct: 346 RASPTGKPSTASPTGTPSRASPTGSPSTASLTGLSSTASP 385
Score = 28.5 bits (62), Expect = 4.4
Identities = 29/79 (36%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 145 RIATPVRVLDPSR-SRCHGPLFASCQLTPS--AGLKTPRQG--------ASLQATPAKPS 193
R +T PSR S P AS +TPS A L P + ASL TP+ S
Sbjct: 115 RPSTASLTRSPSRASLTTTPSRASLSMTPSTAAALTMPSRASLTRTPPRASLTMTPSTAS 174
Query: 194 LQATPP--STCGVQSQGAP 210
L TPP S G+ S+ +P
Sbjct: 175 LTRTPPRASPTGMPSRTSP 193
Score = 27.7 bits (60), Expect = 7.4
Identities = 33/117 (28%), Positives = 43/117 (36%), Gaps = 14/117 (11%)
Query: 83 ILGVRGSYPPVGGPPRHLPPGPRHLRIRSRLPAAARGSGAAPLPPCSAAYTRLSGTGARE 142
+ G+ + P G PPR P G +R P A +G LS T +
Sbjct: 376 LTGLSSTASPTGTPPRASPTGTPSTASLTRKPPRASPTG------------MLSRTSITK 423
Query: 143 GLRIATPVRVLDPSRSRCHGPLFASCQLTPSAGLKTPRQG-ASLQATPAKPSLQATP 198
A+P R P S P AS TPS T Q AS +P+ S +P
Sbjct: 424 MDSTASPTRT-PPRASPTGTPPRASPTGTPSRASPTGTQSTASPTGSPSTASPTGSP 479
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.139 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,219,331
Number of Sequences: 37866
Number of extensions: 586567
Number of successful extensions: 3203
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 190
Number of HSP's that attempted gapping in prelim test: 2985
Number of HSP's gapped (non-prelim): 378
length of query: 211
length of database: 18,247,518
effective HSP length: 98
effective length of query: 113
effective length of database: 14,536,650
effective search space: 1642641450
effective search space used: 1642641450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.