Guide to the Human Genome
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Name: LOC100289713 Sequence: fasta or formatted (211aa) NCBI GI: 239751987
Description:

PREDICTED: hypothetical protein XP_002348091

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         19           3
 C cysteine            0.9          2           1
 D aspartate           2.8          6           2
 E glutamate           6.6         14           2
 F phenylalanine       5.7         12           2
 G glycine             9.5         20           2
 H histidine           2.8          6           2
 I isoleucine          4.3          9           2
 K lysine              0.9          2           1
 L leucine            10.0         21           2
 M methionine          2.4          5           1
 N asparagine          2.8          6           1
 P proline             5.2         11           2
 Q glutamine           8.1         17           2
 R arginine            6.2         13           2
 S serine              5.7         12           2
 T threonine           3.8          8           1
 V valine              8.5         18           2
 W tryptophan          1.4          3           1
 Y tyrosine            3.3          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348091 
BAK1                  0.975   BCL2-antagonist/killer 1 
BCL2                  0.112   B-cell lymphoma protein 2 beta isoform 
BCL2L1                0.109   BCL2-like 1 isoform 1 
BCL2                  0.107   B-cell lymphoma protein 2 alpha isoform 
BCL2L2                0.097   BCL2-like 2 protein 
BAX                   0.079   BCL2-associated X protein isoform beta 
BAX                   0.077   BCL2-associated X protein isoform alpha 
BAX                   0.074   BCL2-associated X protein isoform sigma 
MCL1                  0.062   myeloid cell leukemia sequence 1 isoform 1 
BCL2A1                0.055   BCL2-related protein A1 isoform 2 
BCL2A1                0.055   BCL2-related protein A1 isoform 1 
BOK                   0.055   BCL2-related ovarian killer 
BAX                   0.052   BCL2-associated X protein isoform delta 
NCOR2                 0.015   nuclear receptor co-repressor 2 isoform 2 
NCOR2                 0.015   nuclear receptor co-repressor 2 isoform 1 
MICALL1               0.015   molecule interacting with Rab13 
NCOR1                 0.012   nuclear receptor co-repressor 1 
KIFC2                 0.012   kinesin family member C2 
SLC28A3               0.010   concentrative Na+-nucleoside cotransporter 
ARHGAP30              0.010   Rho GTPase activating protein 30 isoform 2 
NUP98                 0.010   nucleoporin 98kD isoform 4 
NUP98                 0.010   nucleoporin 98kD isoform 1 
AATK                  0.010   apoptosis-associated tyrosine kinase 
ZFP36L2               0.010   zinc finger protein 36, C3H type-like 2 
TTF2                  0.010   transcription termination factor, RNA polymerase II ...
LRRC16B               0.007   leucine rich repeat containing 16B 
DKK3                  0.007   dickkopf homolog 3 precursor 
DKK3                  0.007   dickkopf homolog 3 precursor 
DKK3                  0.007   dickkopf homolog 3 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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