Guide to the Human Genome
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Name: SLC28A3 Sequence: fasta or formatted (691aa) NCBI GI: 11545853
Description:

concentrative Na+-nucleoside cotransporter

Referenced in:

Solute Carrier Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.7         53           3
 C cysteine            2.0         14           2
 D aspartate           2.6         18           3
 E glutamate           4.9         34           2
 F phenylalanine       6.8         47           2
 G glycine             7.4         51           2
 H histidine           2.3         16           2
 I isoleucine          6.9         48           2
 K lysine              3.8         26           1
 L leucine            10.6         73           2
 M methionine          3.3         23           2
 N asparagine          4.3         30           2
 P proline             3.6         25           1
 Q glutamine           3.0         21           3
 R arginine            3.9         27           2
 S serine              8.8         61           3
 T threonine           5.5         38           2
 V valine              7.1         49           2
 W tryptophan          2.3         16           1
 Y tyrosine            3.0         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   concentrative Na+-nucleoside cotransporter 
SLC28A1               0.371   solute carrier family 28, member 1 isoform 1 
SLC28A2               0.371   solute carrier family 28 (sodium-coupled nucleoside...
SLC28A1               0.015   solute carrier family 28, member 1 isoform 2 
MUM1L1                0.009   melanoma associated antigen (mutated) 1-like 1 [Homo...
TCHH                  0.007   trichohyalin 
CD19                  0.007   CD19 antigen 
MYT1                  0.006   myelin transcription factor 1 
MRGPRE                0.006   MAS-related GPR, member E 
SLC5A11               0.006   solute carrier family 5 (sodium/glucose cotransporte...
SLC5A4                0.005   solute carrier family 5 (low affinity glucose cotran...
CTR9                  0.005   SH2 domain binding protein 1 
LGSN                  0.004   lengsin, lens protein with glutamine synthetase dom...
ATF7IP                0.004   activating transcription factor 7 interacting protei...
TSPYL2                0.004   TSPY-like 2 
SETD1B                0.004   SET domain containing 1B 
RGAG4                 0.004   retrotransposon gag domain containing 4 
BMP2K                 0.004   BMP-2 inducible kinase isoform a 
NEUROD1               0.004   neurogenic differentiation 1 
BPTF                  0.004   bromodomain PHD finger transcription factor isoform ...
BPTF                  0.004   bromodomain PHD finger transcription factor isoform ...
ADD2                  0.004   adducin 2 isoform e 
ADD2                  0.004   adducin 2 isoform d 
ADD2                  0.004   adducin 2 isoform c 
ADD2                  0.004   adducin 2 isoform b 
ADD2                  0.004   adducin 2 isoform a 
HERC1                 0.004   guanine nucleotide exchange factor p532 
RBM25                 0.004   RNA binding motif protein 25 
CD300A                0.004   leukocyte membrane antigen 
SRRT                  0.004   arsenate resistance protein 2 isoform e 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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