Guide to the Human Genome
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Search of human proteins with 239751984

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239751984 PREDICTED: similar to hCG1785205 [Homo sapiens]
         (362 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239757474 PREDICTED: similar to hCG1785205 [Homo sapiens]          762   0.0  
gi|239751984 PREDICTED: similar to hCG1785205 [Homo sapiens]          762   0.0  
gi|239746471 PREDICTED: hypothetical protein XP_002343764 [Homo ...   755   0.0  
gi|167555104 interferon regulatory factor 4 [Homo sapiens]             63   5e-10
gi|25282407 interferon-stimulated transcription factor 3, gamma ...    62   6e-10
gi|4504567 interferon regulatory factor 8 [Homo sapiens]               57   2e-08
gi|98985819 interferon regulatory factor 7 isoform d [Homo sapiens]    54   2e-07
gi|4758610 interferon regulatory factor 7 isoform a [Homo sapiens]     54   2e-07
gi|4809284 interferon regulatory factor 7 isoform b [Homo sapiens]     54   2e-07
gi|5453700 interferon regulatory factor 6 [Homo sapiens]               47   3e-05
gi|153082752 interferon regulatory factor 2 [Homo sapiens]             47   3e-05
gi|4504727 interferon regulatory factor 5 isoform a [Homo sapiens]     46   6e-05
gi|148833515 interferon regulatory factor 5 isoform c [Homo sapi...    45   1e-04
gi|148833496 interferon regulatory factor 5 isoform b [Homo sapi...    45   1e-04
gi|148833494 interferon regulatory factor 5 isoform d [Homo sapi...    45   1e-04
gi|148833492 interferon regulatory factor 5 isoform c [Homo sapi...    45   1e-04
gi|148833488 interferon regulatory factor 5 isoform c [Homo sapi...    45   1e-04
gi|14249182 interferon regulatory factor 5 isoform b [Homo sapiens]    45   1e-04
gi|4504721 interferon regulatory factor 1 [Homo sapiens]               44   2e-04
gi|4504725 interferon regulatory factor 3 [Homo sapiens]               41   0.002
gi|40807477 retinoic acid induced 1 [Homo sapiens]                     37   0.036
gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]         36   0.061
gi|239754993 PREDICTED: hypothetical protein [Homo sapiens]            35   0.14 
gi|6912458 calcineurin binding protein 1 [Homo sapiens]                34   0.23 
gi|25777612 proteasome 26S non-ATPase subunit 3 [Homo sapiens]         34   0.23 
gi|8659574 transcription factor E3 [Homo sapiens]                      33   0.40 
gi|40807447 papillary renal cell carcinoma translocation-associa...    33   0.40 
gi|38683807 ankyrin repeat domain protein 17 isoform a [Homo sap...    33   0.40 
gi|38683816 ankyrin repeat domain protein 17 isoform b [Homo sap...    33   0.40 
gi|40807450 papillary renal cell carcinoma translocation-associa...    33   0.40 

>gi|239757474 PREDICTED: similar to hCG1785205 [Homo sapiens]
          Length = 362

 Score =  762 bits (1967), Expect = 0.0
 Identities = 362/362 (100%), Positives = 362/362 (100%)

Query: 1   MAEPEVPCASGTWGAQIESGCYVGLCWEDAGKTLFRIPWKHVAKQGYQAWMVHKGKHLEG 60
           MAEPEVPCASGTWGAQIESGCYVGLCWEDAGKTLFRIPWKHVAKQGYQAWMVHKGKHLEG
Sbjct: 1   MAEPEVPCASGTWGAQIESGCYVGLCWEDAGKTLFRIPWKHVAKQGYQAWMVHKGKHLEG 60

Query: 61  TNKEAPPPGRNDSTLPSARAPPSGLQEPLCTGGNSLGIPEESQASSPTLTASSPNAQDGS 120
           TNKEAPPPGRNDSTLPSARAPPSGLQEPLCTGGNSLGIPEESQASSPTLTASSPNAQDGS
Sbjct: 61  TNKEAPPPGRNDSTLPSARAPPSGLQEPLCTGGNSLGIPEESQASSPTLTASSPNAQDGS 120

Query: 121 GFATEDEDKEWPHRLAQQGSLLPPILLQALWLTTGARHRTSKTSGAQCPPMTSATCLLAA 180
           GFATEDEDKEWPHRLAQQGSLLPPILLQALWLTTGARHRTSKTSGAQCPPMTSATCLLAA
Sbjct: 121 GFATEDEDKEWPHRLAQQGSLLPPILLQALWLTTGARHRTSKTSGAQCPPMTSATCLLAA 180

Query: 181 RVALLSAALVREATGRTAQRCRLSPRAAAERLLGPPPHVAAGPVLAQPNKVERRRTCHLL 240
           RVALLSAALVREATGRTAQRCRLSPRAAAERLLGPPPHVAAGPVLAQPNKVERRRTCHLL
Sbjct: 181 RVALLSAALVREATGRTAQRCRLSPRAAAERLLGPPPHVAAGPVLAQPNKVERRRTCHLL 240

Query: 241 NTRGFLQAVGRLEEWNRVAWERGHKDACRIIVCPPAGWSPDPKYQICLCFGEEDPGPTQH 300
           NTRGFLQAVGRLEEWNRVAWERGHKDACRIIVCPPAGWSPDPKYQICLCFGEEDPGPTQH
Sbjct: 241 NTRGFLQAVGRLEEWNRVAWERGHKDACRIIVCPPAGWSPDPKYQICLCFGEEDPGPTQH 300

Query: 301 PKEQLIMADVQVQLRPGSSSCTLSASTERPDGSSTPGNPDGITHLQCSCLHPKRAASSSC 360
           PKEQLIMADVQVQLRPGSSSCTLSASTERPDGSSTPGNPDGITHLQCSCLHPKRAASSSC
Sbjct: 301 PKEQLIMADVQVQLRPGSSSCTLSASTERPDGSSTPGNPDGITHLQCSCLHPKRAASSSC 360

Query: 361 TR 362
           TR
Sbjct: 361 TR 362


>gi|239751984 PREDICTED: similar to hCG1785205 [Homo sapiens]
          Length = 362

 Score =  762 bits (1967), Expect = 0.0
 Identities = 362/362 (100%), Positives = 362/362 (100%)

Query: 1   MAEPEVPCASGTWGAQIESGCYVGLCWEDAGKTLFRIPWKHVAKQGYQAWMVHKGKHLEG 60
           MAEPEVPCASGTWGAQIESGCYVGLCWEDAGKTLFRIPWKHVAKQGYQAWMVHKGKHLEG
Sbjct: 1   MAEPEVPCASGTWGAQIESGCYVGLCWEDAGKTLFRIPWKHVAKQGYQAWMVHKGKHLEG 60

Query: 61  TNKEAPPPGRNDSTLPSARAPPSGLQEPLCTGGNSLGIPEESQASSPTLTASSPNAQDGS 120
           TNKEAPPPGRNDSTLPSARAPPSGLQEPLCTGGNSLGIPEESQASSPTLTASSPNAQDGS
Sbjct: 61  TNKEAPPPGRNDSTLPSARAPPSGLQEPLCTGGNSLGIPEESQASSPTLTASSPNAQDGS 120

Query: 121 GFATEDEDKEWPHRLAQQGSLLPPILLQALWLTTGARHRTSKTSGAQCPPMTSATCLLAA 180
           GFATEDEDKEWPHRLAQQGSLLPPILLQALWLTTGARHRTSKTSGAQCPPMTSATCLLAA
Sbjct: 121 GFATEDEDKEWPHRLAQQGSLLPPILLQALWLTTGARHRTSKTSGAQCPPMTSATCLLAA 180

Query: 181 RVALLSAALVREATGRTAQRCRLSPRAAAERLLGPPPHVAAGPVLAQPNKVERRRTCHLL 240
           RVALLSAALVREATGRTAQRCRLSPRAAAERLLGPPPHVAAGPVLAQPNKVERRRTCHLL
Sbjct: 181 RVALLSAALVREATGRTAQRCRLSPRAAAERLLGPPPHVAAGPVLAQPNKVERRRTCHLL 240

Query: 241 NTRGFLQAVGRLEEWNRVAWERGHKDACRIIVCPPAGWSPDPKYQICLCFGEEDPGPTQH 300
           NTRGFLQAVGRLEEWNRVAWERGHKDACRIIVCPPAGWSPDPKYQICLCFGEEDPGPTQH
Sbjct: 241 NTRGFLQAVGRLEEWNRVAWERGHKDACRIIVCPPAGWSPDPKYQICLCFGEEDPGPTQH 300

Query: 301 PKEQLIMADVQVQLRPGSSSCTLSASTERPDGSSTPGNPDGITHLQCSCLHPKRAASSSC 360
           PKEQLIMADVQVQLRPGSSSCTLSASTERPDGSSTPGNPDGITHLQCSCLHPKRAASSSC
Sbjct: 301 PKEQLIMADVQVQLRPGSSSCTLSASTERPDGSSTPGNPDGITHLQCSCLHPKRAASSSC 360

Query: 361 TR 362
           TR
Sbjct: 361 TR 362


>gi|239746471 PREDICTED: hypothetical protein XP_002343764 [Homo
           sapiens]
          Length = 362

 Score =  755 bits (1950), Expect = 0.0
 Identities = 360/362 (99%), Positives = 360/362 (99%)

Query: 1   MAEPEVPCASGTWGAQIESGCYVGLCWEDAGKTLFRIPWKHVAKQGYQAWMVHKGKHLEG 60
           MAEPEVPCASGT GAQIESGCYVGLCWEDAGKTLFRIPWKHVAKQGYQAWMVHKGKHLEG
Sbjct: 1   MAEPEVPCASGTGGAQIESGCYVGLCWEDAGKTLFRIPWKHVAKQGYQAWMVHKGKHLEG 60

Query: 61  TNKEAPPPGRNDSTLPSARAPPSGLQEPLCTGGNSLGIPEESQASSPTLTASSPNAQDGS 120
           TNKEAPPPGRNDSTLPS RAPPSGLQEPLCTGGNSLGIPEESQASSPTLTASSPNAQDGS
Sbjct: 61  TNKEAPPPGRNDSTLPSTRAPPSGLQEPLCTGGNSLGIPEESQASSPTLTASSPNAQDGS 120

Query: 121 GFATEDEDKEWPHRLAQQGSLLPPILLQALWLTTGARHRTSKTSGAQCPPMTSATCLLAA 180
           GFATEDEDKEWPHRLAQQGSLLPPILLQALWLTTGARHRTSKTSGAQCPPMTSATCLLAA
Sbjct: 121 GFATEDEDKEWPHRLAQQGSLLPPILLQALWLTTGARHRTSKTSGAQCPPMTSATCLLAA 180

Query: 181 RVALLSAALVREATGRTAQRCRLSPRAAAERLLGPPPHVAAGPVLAQPNKVERRRTCHLL 240
           RVALLSAALVREATGRTAQRCRLSPRAAAERLLGPPPHVAAGPVLAQPNKVERRRTCHLL
Sbjct: 181 RVALLSAALVREATGRTAQRCRLSPRAAAERLLGPPPHVAAGPVLAQPNKVERRRTCHLL 240

Query: 241 NTRGFLQAVGRLEEWNRVAWERGHKDACRIIVCPPAGWSPDPKYQICLCFGEEDPGPTQH 300
           NTRGFLQAVGRLEEWNRVAWERGHKDACRIIVCPPAGWSPDPKYQICLCFGEEDPGPTQH
Sbjct: 241 NTRGFLQAVGRLEEWNRVAWERGHKDACRIIVCPPAGWSPDPKYQICLCFGEEDPGPTQH 300

Query: 301 PKEQLIMADVQVQLRPGSSSCTLSASTERPDGSSTPGNPDGITHLQCSCLHPKRAASSSC 360
           PKEQLIMADVQVQLRPGSSSCTLSASTERPDGSSTPGNPDGITHLQCSCLHPKRAASSSC
Sbjct: 301 PKEQLIMADVQVQLRPGSSSCTLSASTERPDGSSTPGNPDGITHLQCSCLHPKRAASSSC 360

Query: 361 TR 362
           TR
Sbjct: 361 TR 362


>gi|167555104 interferon regulatory factor 4 [Homo sapiens]
          Length = 451

 Score = 62.8 bits (151), Expect = 5e-10
 Identities = 30/61 (49%), Positives = 37/61 (60%), Gaps = 9/61 (14%)

Query: 16 QIESGCYVGLCWEDAGKTLFRIPWKHVAKQGY---------QAWMVHKGKHLEGTNKEAP 66
          QI+SG Y GL WE+  K++FRIPWKH  KQ Y         +AW + KGK  EG +K  P
Sbjct: 31 QIDSGKYPGLVWENEEKSIFRIPWKHAGKQDYNREEDAALFKAWALFKGKFREGIDKPDP 90

Query: 67 P 67
          P
Sbjct: 91 P 91



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 24/85 (28%)

Query: 227 QPNKVERRRTCHLLNTRGFLQAVGRLEEWNRVAWERGHKDACRIIVCPPAGWSPDPKYQI 286
           +PNK+ER +TC L +T+ FL  +       R                        P++Q+
Sbjct: 346 RPNKLERDQTCKLFDTQQFLSELQAFAHHGRSL----------------------PRFQV 383

Query: 287 CLCFGEEDPGPTQHPKEQLIMADVQ 311
            LCFGEE P P +  K  LI A V+
Sbjct: 384 TLCFGEEFPDPQRQRK--LITAHVE 406


>gi|25282407 interferon-stimulated transcription factor 3, gamma
          48kDa [Homo sapiens]
          Length = 393

 Score = 62.4 bits (150), Expect = 6e-10
 Identities = 26/54 (48%), Positives = 35/54 (64%), Gaps = 9/54 (16%)

Query: 16 QIESGCYVGLCWEDAGKTLFRIPWKHVAKQG---------YQAWMVHKGKHLEG 60
          Q+ESG + G+CW+D  KT+FRIPWKH  KQ          ++AW + KGK+ EG
Sbjct: 19 QVESGQFPGVCWDDTAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYKEG 72



 Score = 28.9 bits (63), Expect = 7.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)

Query: 268 CRIIVCPPAGWSPDPKYQICLCFGEEDPGPTQHPK 302
           CR +V    G  P PK+Q+ L F EE  G +  P+
Sbjct: 329 CRDLVRYFQGLGPPPKFQVTLNFWEESHGSSHTPQ 363


>gi|4504567 interferon regulatory factor 8 [Homo sapiens]
          Length = 426

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 28/58 (48%), Positives = 33/58 (56%), Gaps = 9/58 (15%)

Query: 16 QIESGCYVGLCWEDAGKTLFRIPWKHVAKQGY---------QAWMVHKGKHLEGTNKE 64
          QI+S  Y GL WE+  K++FRIPWKH  KQ Y         +AW V KGK  EG   E
Sbjct: 17 QIDSSMYPGLIWENEEKSMFRIPWKHAGKQDYNQEVDASIFKAWAVFKGKFKEGDKAE 74


>gi|98985819 interferon regulatory factor 7 isoform d [Homo
          sapiens]
          Length = 516

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 8/61 (13%)

Query: 16 QIESGCYVGLCWEDAGKTLFRIPWKHVAKQG--------YQAWMVHKGKHLEGTNKEAPP 67
          +I SGCY GL W D  +T FR+PWKH A++         ++AW V +G+    +    PP
Sbjct: 34 EISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIFKAWAVARGRWPPSSRGGGPP 93

Query: 68 P 68
          P
Sbjct: 94 P 94


>gi|4758610 interferon regulatory factor 7 isoform a [Homo
          sapiens]
          Length = 503

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 8/61 (13%)

Query: 16 QIESGCYVGLCWEDAGKTLFRIPWKHVAKQG--------YQAWMVHKGKHLEGTNKEAPP 67
          +I SGCY GL W D  +T FR+PWKH A++         ++AW V +G+    +    PP
Sbjct: 21 EISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIFKAWAVARGRWPPSSRGGGPP 80

Query: 68 P 68
          P
Sbjct: 81 P 81


>gi|4809284 interferon regulatory factor 7 isoform b [Homo
          sapiens]
          Length = 474

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 24/61 (39%), Positives = 34/61 (55%), Gaps = 8/61 (13%)

Query: 16 QIESGCYVGLCWEDAGKTLFRIPWKHVAKQG--------YQAWMVHKGKHLEGTNKEAPP 67
          +I SGCY GL W D  +T FR+PWKH A++         ++AW V +G+    +    PP
Sbjct: 21 EISSGCYEGLQWLDEARTCFRVPWKHFARKDLSEADARIFKAWAVARGRWPPSSRGGGPP 80

Query: 68 P 68
          P
Sbjct: 81 P 81


>gi|5453700 interferon regulatory factor 6 [Homo sapiens]
          Length = 467

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 9/61 (14%)

Query: 15 AQIESGCYVGLCWEDAGKTLFRIPWKHVAKQG---------YQAWMVHKGKHLEGTNKEA 65
          AQ++SG Y GL W       F+IPWKH  +           ++AW V  GK+ EG +   
Sbjct: 16 AQVDSGLYPGLIWLHRDSKRFQIPWKHATRHSPQQEEENTIFKAWAVETGKYQEGVDDPD 75

Query: 66 P 66
          P
Sbjct: 76 P 76


>gi|153082752 interferon regulatory factor 2 [Homo sapiens]
          Length = 349

 Score = 47.0 bits (110), Expect = 3e-05
 Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 9/60 (15%)

Query: 16 QIESGCYVGLCWEDAGKTLFRIPWKHVAKQG---------YQAWMVHKGKHLEGTNKEAP 66
          QI S    GL W +  K +F+IPW H A+ G         ++ W +H GKH  G +K  P
Sbjct: 15 QINSNTIPGLKWLNKEKKIFQIPWMHAARHGWDVEKDAPLFRNWAIHTGKHQPGVDKPDP 74


>gi|4504727 interferon regulatory factor 5 isoform a [Homo sapiens]
          Length = 504

 Score = 45.8 bits (107), Expect = 6e-05
 Identities = 45/175 (25%), Positives = 68/175 (38%), Gaps = 43/175 (24%)

Query: 15  AQIESGCYVGLCWEDAGKTLFRIPWKHVAKQG---------YQAWMVHKGKHLEGTNKEA 65
           AQ+ S  Y GL W +  K LF IPW+H  + G         ++AW    GK+ EG ++  
Sbjct: 23  AQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGKYTEGVDEAD 82

Query: 66  PPPGR----------NDSTL----PSARAPPSGLQEPLCTGG-----------NSLGIPE 100
           P   +           D  L    P    P       +C+ G            S G  E
Sbjct: 83  PAKWKANLRCALNKSRDFRLIYDGPRDMPPQPYKIYEVCSNGPAPTDSQPPEDYSFGAGE 142

Query: 101 ESQAS--------SPTLTASSPNAQDGSGFATEDEDKEWPHRLAQQGSLLPPILL 147
           E +          S +LT +  +    + ++   ED +WP  L Q  +L PP++L
Sbjct: 143 EEEEEEELQRMLPSLSLTDAVQSGPHMTPYSLLKEDVKWPPTL-QPPTLQPPVVL 196


>gi|148833515 interferon regulatory factor 5 isoform c [Homo
          sapiens]
          Length = 488

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 9/61 (14%)

Query: 15 AQIESGCYVGLCWEDAGKTLFRIPWKHVAKQG---------YQAWMVHKGKHLEGTNKEA 65
          AQ+ S  Y GL W +  K LF IPW+H  + G         ++AW    GK+ EG ++  
Sbjct: 23 AQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGKYTEGVDEAD 82

Query: 66 P 66
          P
Sbjct: 83 P 83


>gi|148833496 interferon regulatory factor 5 isoform b [Homo
          sapiens]
          Length = 498

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 9/61 (14%)

Query: 15 AQIESGCYVGLCWEDAGKTLFRIPWKHVAKQG---------YQAWMVHKGKHLEGTNKEA 65
          AQ+ S  Y GL W +  K LF IPW+H  + G         ++AW    GK+ EG ++  
Sbjct: 23 AQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGKYTEGVDEAD 82

Query: 66 P 66
          P
Sbjct: 83 P 83


>gi|148833494 interferon regulatory factor 5 isoform d [Homo
          sapiens]
          Length = 514

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 9/61 (14%)

Query: 15 AQIESGCYVGLCWEDAGKTLFRIPWKHVAKQG---------YQAWMVHKGKHLEGTNKEA 65
          AQ+ S  Y GL W +  K LF IPW+H  + G         ++AW    GK+ EG ++  
Sbjct: 23 AQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGKYTEGVDEAD 82

Query: 66 P 66
          P
Sbjct: 83 P 83


>gi|148833492 interferon regulatory factor 5 isoform c [Homo
          sapiens]
          Length = 488

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 9/61 (14%)

Query: 15 AQIESGCYVGLCWEDAGKTLFRIPWKHVAKQG---------YQAWMVHKGKHLEGTNKEA 65
          AQ+ S  Y GL W +  K LF IPW+H  + G         ++AW    GK+ EG ++  
Sbjct: 23 AQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGKYTEGVDEAD 82

Query: 66 P 66
          P
Sbjct: 83 P 83


>gi|148833488 interferon regulatory factor 5 isoform c [Homo
          sapiens]
          Length = 488

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 9/61 (14%)

Query: 15 AQIESGCYVGLCWEDAGKTLFRIPWKHVAKQG---------YQAWMVHKGKHLEGTNKEA 65
          AQ+ S  Y GL W +  K LF IPW+H  + G         ++AW    GK+ EG ++  
Sbjct: 23 AQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGKYTEGVDEAD 82

Query: 66 P 66
          P
Sbjct: 83 P 83


>gi|14249182 interferon regulatory factor 5 isoform b [Homo
          sapiens]
          Length = 498

 Score = 45.1 bits (105), Expect = 1e-04
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 9/61 (14%)

Query: 15 AQIESGCYVGLCWEDAGKTLFRIPWKHVAKQG---------YQAWMVHKGKHLEGTNKEA 65
          AQ+ S  Y GL W +  K LF IPW+H  + G         ++AW    GK+ EG ++  
Sbjct: 23 AQVNSCQYPGLQWVNGEKKLFCIPWRHATRHGPSQDGDNTIFKAWAKETGKYTEGVDEAD 82

Query: 66 P 66
          P
Sbjct: 83 P 83


>gi|4504721 interferon regulatory factor 1 [Homo sapiens]
          Length = 325

 Score = 44.3 bits (103), Expect = 2e-04
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 9/60 (15%)

Query: 16 QIESGCYVGLCWEDAGKTLFRIPWKHVAKQG---------YQAWMVHKGKHLEGTNKEAP 66
          QI S    GL W +  + +F+IPWKH AK G         +++W +H G++  G  +  P
Sbjct: 15 QINSNQIPGLIWINKEEMIFQIPWKHAAKHGWDINKDACLFRSWAIHTGRYKAGEKEPDP 74


>gi|4504725 interferon regulatory factor 3 [Homo sapiens]
          Length = 427

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 8/61 (13%)

Query: 15 AQIESGCYVGLCWEDAGKTLFRIPWKHVAKQG--------YQAWMVHKGKHLEGTNKEAP 66
          +Q++ G   G+ W +  +T FRIPWKH  +Q         +QAW    G ++ G +K   
Sbjct: 14 SQLDLGQLEGVAWVNKSRTRFRIPWKHGLRQDAQQEDFGIFQAWAEATGAYVPGRDKPDL 73

Query: 67 P 67
          P
Sbjct: 74 P 74


>gi|40807477 retinoic acid induced 1 [Homo sapiens]
          Length = 1906

 Score = 36.6 bits (83), Expect = 0.036
 Identities = 40/158 (25%), Positives = 64/158 (40%), Gaps = 14/158 (8%)

Query: 67   PPGRNDSTLPSARAPPS---GLQEPLCTGGNSLGIPEESQASSPTLTASSPNAQDGSGFA 123
            PPG     L +  APP    G Q      G  +G P    ASSP+  A+ P A D S   
Sbjct: 1071 PPG-----LTTTPAPPDKLGGKQRAAFKSGKRVGKPSPKAASSPSNPAALPVASDSSPMG 1125

Query: 124  TEDEDKEWPHRLAQQGSLLPPILLQALWLTTGARH-RTSKTSGAQCPPMTSATCLL--AA 180
            ++ ++ + P   +  G     ++L++   T    H +  + S  + P   +   LL  + 
Sbjct: 1126 SKTKETDSP---STPGKDQRSMILRSRTKTQEIFHSKRRRPSEGRLPNCRATKKLLDNSH 1182

Query: 181  RVALLSAALVREATGRTAQRCRLSPRAAAERLLGPPPH 218
              A    +   +  GR +QR R+    A  +L   P H
Sbjct: 1183 LPATFKVSSSPQKEGRVSQRARVPKPGAGSKLSDRPLH 1220


>gi|169658378 trinucleotide repeat containing 18 [Homo sapiens]
          Length = 2968

 Score = 35.8 bits (81), Expect = 0.061
 Identities = 55/208 (26%), Positives = 73/208 (35%), Gaps = 22/208 (10%)

Query: 60  GTNKEAPPPGRNDSTLPSARAPPSGLQEPLCTGGNSLGIPEESQASSPTLTASSPNAQDG 119
           GT K  P P    ++   AR P SG   P   GG  L    E   S+          ++G
Sbjct: 617 GTMKPEPAPTSAGASRAQARLPHSG--GPAAGGGRQLKRDPERPESAKAF------GREG 668

Query: 120 SGFATEDEDKEWPHRLAQ----------QGSLLPPILLQ--ALWLTTGARHRTSKTSGAQ 167
           SG   E E +  P  +A            G L P ++ Q  +L L+    H  +      
Sbjct: 669 SGAQGEAEVRHPPVGIAVAVARQKDSGGSGRLGPGLVDQERSLSLSNVKGHGRADEDCVD 728

Query: 168 CPPMTSATCLLAARVALLSAALVREATGRTAQRCRLSPRAAAERLLGPPPHVAAGPVLAQ 227
                    LL AR+      L+RE+    A   RL P + A   L P   V  GP LA 
Sbjct: 729 DRARHREERLLGARLDRDQEKLLRESK-ELADLARLHPTSCAPNGLNPNLMVTGGPALAG 787

Query: 228 PNKVERRRTCHLLNTRGFLQAVGRLEEW 255
             +       HL  T  +L   G    W
Sbjct: 788 SGRWSADPAAHLA-THPWLPRSGNASMW 814


>gi|239754993 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 221

 Score = 34.7 bits (78), Expect = 0.14
 Identities = 43/177 (24%), Positives = 62/177 (35%), Gaps = 31/177 (17%)

Query: 30  AGKTLFRIPWKHVAKQGYQAWMVH-----KGKHLEGTNKEAPPPGRNDSTLPSARAPPSG 84
           A + L  +   H A +  +AW         G H   T+  APPP   + T  SA+  P  
Sbjct: 34  ASRPLRDLRASHRAPRTQRAWSSPLTPSPAGTHAGSTHTSAPPPNFWERTPGSAQ--PLA 91

Query: 85  LQEPLC-------------------TGGNSLGIPEESQASSPTLTASSPNAQDGSGFATE 125
            Q+PL                    T  + L IP  S +  P+   +  +     G A  
Sbjct: 92  FQKPLYAYLIFVIGDEPSLLSPFPHTHQSPLAIPSPSASPPPSCAPAPHSHPPPIGLALA 151

Query: 126 DEDKEWPHRLAQQGSLLPPI--LLQALWLTT---GARHRTSKTSGAQCPPMTSATCL 177
            + + WP     + S  PP+    Q+ W  T   G R R +  S    P      CL
Sbjct: 152 CKSRRWPRAQPSRMSPGPPLWERRQSYWPLTRPLGPRARQAFESTCSSPESRPRPCL 208


>gi|6912458 calcineurin binding protein 1 [Homo sapiens]
          Length = 2220

 Score = 33.9 bits (76), Expect = 0.23
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 6/58 (10%)

Query: 55   GKHLEGTNKEAPPPGRNDSTLPSA---RAPPSGLQEPLCTGGNSLGIPEESQASSPTL 109
            GK L+G  +E    G+N+ +L S    RA   G+Q+P      S  IP +  AS+PTL
Sbjct: 1423 GKDLQGATEER---GKNEESLESTEGFRAAEQGVQKPAAETPASACIPGKPSASTPTL 1477


>gi|25777612 proteasome 26S non-ATPase subunit 3 [Homo sapiens]
          Length = 534

 Score = 33.9 bits (76), Expect = 0.23
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 7/102 (6%)

Query: 60  GTNKEAPPPGRNDSTLPSARAPPS-GLQEPLCTGGNSLGIPEESQASSPTLTASSPNAQD 118
           G +K  PPPG  +   P   AP    ++E   TGG S G     +A   T  A++ ++Q 
Sbjct: 11  GADKAKPPPGGGEQEPPPPPAPQDVEMKEEAATGGGSTG-----EADGKTAAAAAEHSQR 65

Query: 119 GSGFATEDEDKEWPHRLAQQGS-LLPPILLQALWLTTGARHR 159
                T ++ KE   +L +  S   P  +L+AL +      R
Sbjct: 66  ELDTVTLEDIKEHVKQLEKAVSGKEPRFVLRALRMLPSTSRR 107


>gi|8659574 transcription factor E3 [Homo sapiens]
          Length = 575

 Score = 33.1 bits (74), Expect = 0.40
 Identities = 46/155 (29%), Positives = 67/155 (43%), Gaps = 22/155 (14%)

Query: 144 PILLQALWLTTGARHRTSKTSGAQCPPMTSATCLLAARVALLSAALVREATGRTAQRCRL 203
           PI LQA   T      +S   G++ P M+S++   ++RV LL   L+R A  +  +R   
Sbjct: 79  PISLQATPATPATLSASSSAGGSRTPAMSSSS---SSRV-LLRQQLMR-AQAQEQERRER 133

Query: 204 SPRAAAERLLGPPP--------------HVAAGPVLAQ-PNKVERRRTCHLLN-TRGFLQ 247
             +AAA     P P              H  + P  AQ P +V + +T HL N TR  LQ
Sbjct: 134 REQAAAAPFPSPAPASPAISVVGVSAGGHTLSRPPPAQVPREVLKVQT-HLENPTRYHLQ 192

Query: 248 AVGRLEEWNRVAWERGHKDACRIIVCPPAGWSPDP 282
              R +    ++   G K A + +  PP   S  P
Sbjct: 193 QARRQQVKQYLSTTLGPKLASQALTPPPGPASAQP 227


>gi|40807447 papillary renal cell carcinoma translocation-associated
           gene product isoform 1 [Homo sapiens]
          Length = 491

 Score = 33.1 bits (74), Expect = 0.40
 Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 14/107 (13%)

Query: 66  PPPGRNDST-----------LPSARAPPSGLQEPLCTGGNSLGIPEESQASSPTLTASSP 114
           PPPG + +            LPS R P   L  P+   G  LG+P+  +   P   A +P
Sbjct: 92  PPPGVSPAEAAGVGEGLGLGLPSPRGPGLNLPPPIGGAGPPLGLPKPKKRKEPVKIA-AP 150

Query: 115 NAQDGSGFATEDE--DKEWPHRLAQQGSLLPPILLQALWLTTGARHR 159
               G   + EDE   K+   + + +G+ L  +L Q   LT    +R
Sbjct: 151 ELHKGDSDSEEDEPTKKKTILQGSSEGTGLSALLPQPKNLTVKETNR 197


>gi|38683807 ankyrin repeat domain protein 17 isoform a [Homo sapiens]
          Length = 2603

 Score = 33.1 bits (74), Expect = 0.40
 Identities = 41/167 (24%), Positives = 57/167 (34%), Gaps = 7/167 (4%)

Query: 61   TNKEAPPPGRNDSTLPSARAPPSGLQEPLCTGGNSLGIPEESQASSPTLTASSPNAQDGS 120
            TN   P P   +    S+ + PS   +P   GG S   P +  ++SP   ASS   + GS
Sbjct: 2025 TNATYPMPTAKEHYPVSSPSSPSPPAQP---GGVSRNSPLDCGSASPNKVASSSEQEAGS 2081

Query: 121  GFATEDEDKEWPHRLAQQGSLLPPILLQALWLTTGARHRTSKTSGAQCPPMTSAT----C 176
                E  +   P+  +  GS       Q    +     R         PP    T     
Sbjct: 2082 PPVVETTNTRPPNSSSSSGSSSAHSNQQQPPGSVSQEPRPPLQQSQVPPPEVRMTVPPLA 2141

Query: 177  LLAARVALLSAALVREATGRTAQRCRLSPRAAAERLLGPPPHVAAGP 223
              +A VA+ S A V     +T   C           + PPPH    P
Sbjct: 2142 TSSAPVAVPSTAPVTYPMPQTPMGCPQPTPKMETPAIRPPPHGTTAP 2188


>gi|38683816 ankyrin repeat domain protein 17 isoform b [Homo sapiens]
          Length = 2352

 Score = 33.1 bits (74), Expect = 0.40
 Identities = 41/167 (24%), Positives = 57/167 (34%), Gaps = 7/167 (4%)

Query: 61   TNKEAPPPGRNDSTLPSARAPPSGLQEPLCTGGNSLGIPEESQASSPTLTASSPNAQDGS 120
            TN   P P   +    S+ + PS   +P   GG S   P +  ++SP   ASS   + GS
Sbjct: 1774 TNATYPMPTAKEHYPVSSPSSPSPPAQP---GGVSRNSPLDCGSASPNKVASSSEQEAGS 1830

Query: 121  GFATEDEDKEWPHRLAQQGSLLPPILLQALWLTTGARHRTSKTSGAQCPPMTSAT----C 176
                E  +   P+  +  GS       Q    +     R         PP    T     
Sbjct: 1831 PPVVETTNTRPPNSSSSSGSSSAHSNQQQPPGSVSQEPRPPLQQSQVPPPEVRMTVPPLA 1890

Query: 177  LLAARVALLSAALVREATGRTAQRCRLSPRAAAERLLGPPPHVAAGP 223
              +A VA+ S A V     +T   C           + PPPH    P
Sbjct: 1891 TSSAPVAVPSTAPVTYPMPQTPMGCPQPTPKMETPAIRPPPHGTTAP 1937


>gi|40807450 papillary renal cell carcinoma translocation-associated
           gene product isoform 2 [Homo sapiens]
          Length = 459

 Score = 33.1 bits (74), Expect = 0.40
 Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 14/107 (13%)

Query: 66  PPPGRNDST-----------LPSARAPPSGLQEPLCTGGNSLGIPEESQASSPTLTASSP 114
           PPPG + +            LPS R P   L  P+   G  LG+P+  +   P   A +P
Sbjct: 92  PPPGVSPAEAAGVGEGLGLGLPSPRGPGLNLPPPIGGAGPPLGLPKPKKRKEPVKIA-AP 150

Query: 115 NAQDGSGFATEDE--DKEWPHRLAQQGSLLPPILLQALWLTTGARHR 159
               G   + EDE   K+   + + +G+ L  +L Q   LT    +R
Sbjct: 151 ELHKGDSDSEEDEPTKKKTILQGSSEGTGLSALLPQPKNLTVKETNR 197


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.316    0.131    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,717,976
Number of Sequences: 37866
Number of extensions: 1013918
Number of successful extensions: 4142
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 80
Number of HSP's that attempted gapping in prelim test: 4010
Number of HSP's gapped (non-prelim): 192
length of query: 362
length of database: 18,247,518
effective HSP length: 104
effective length of query: 258
effective length of database: 14,309,454
effective search space: 3691839132
effective search space used: 3691839132
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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