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Search of human proteins with 239751936
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751936 PREDICTED: hypothetical protein [Homo sapiens]
(197 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751936 PREDICTED: hypothetical protein [Homo sapiens] 411 e-115
gi|239757419 PREDICTED: hypothetical protein [Homo sapiens] 333 4e-92
gi|55750053 atrophin-1 [Homo sapiens] 44 1e-04
gi|55750041 atrophin-1 [Homo sapiens] 44 1e-04
gi|239757467 PREDICTED: hypothetical protein [Homo sapiens] 42 4e-04
gi|239751993 PREDICTED: hypothetical protein [Homo sapiens] 42 4e-04
gi|239746476 PREDICTED: hypothetical protein [Homo sapiens] 42 4e-04
gi|239746530 PREDICTED: hypothetical protein XP_002343754 [Homo ... 38 0.006
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 37 0.008
gi|239750958 PREDICTED: hypothetical protein XP_002347630 [Homo ... 37 0.014
gi|239745364 PREDICTED: hypothetical protein XP_002343480 [Homo ... 37 0.014
gi|239747614 PREDICTED: similar to Putative uncharacterized prot... 36 0.019
gi|239744552 PREDICTED: hypothetical protein [Homo sapiens] 35 0.041
gi|23510413 sorting nexin 26 [Homo sapiens] 35 0.041
gi|169169912 PREDICTED: hypothetical protein [Homo sapiens] 35 0.054
gi|53832011 calcium channel, voltage-dependent, T type, alpha 1H... 35 0.054
gi|53832009 calcium channel, voltage-dependent, T type, alpha 1H... 35 0.054
gi|239757749 PREDICTED: hypothetical protein [Homo sapiens] 34 0.070
gi|239752259 PREDICTED: similar to hCG1981372 [Homo sapiens] 34 0.070
gi|239749005 PREDICTED: hypothetical protein [Homo sapiens] 34 0.070
gi|239746772 PREDICTED: similar to hCG1981372 [Homo sapiens] 34 0.070
gi|239746769 PREDICTED: similar to Serine/threonine-protein kina... 34 0.070
gi|239743025 PREDICTED: hypothetical protein [Homo sapiens] 34 0.070
gi|239754149 PREDICTED: hypothetical protein XP_002345897 [Homo ... 34 0.092
gi|169163728 PREDICTED: hypothetical protein [Homo sapiens] 34 0.092
gi|239748685 PREDICTED: hypothetical protein XP_002346753 [Homo ... 34 0.092
gi|169163708 PREDICTED: hypothetical protein [Homo sapiens] 34 0.092
gi|239742708 PREDICTED: hypothetical protein XP_002342610 [Homo ... 34 0.092
gi|169163019 PREDICTED: hypothetical protein [Homo sapiens] 34 0.092
gi|169214887 PREDICTED: similar to hCG2017976 [Homo sapiens] 33 0.12
>gi|239751936 PREDICTED: hypothetical protein [Homo sapiens]
Length = 197
Score = 411 bits (1057), Expect = e-115
Identities = 197/197 (100%), Positives = 197/197 (100%)
Query: 1 MEKGMEEGLALDLCSQCLVKGMAHTASLPVEADHFYFAALGQESGDGEEQLHATWDLALP 60
MEKGMEEGLALDLCSQCLVKGMAHTASLPVEADHFYFAALGQESGDGEEQLHATWDLALP
Sbjct: 1 MEKGMEEGLALDLCSQCLVKGMAHTASLPVEADHFYFAALGQESGDGEEQLHATWDLALP 60
Query: 61 RGPRHHGNCRQPAPTAGKRGPEPRYSLGLRAAQGESLRPPAPASLHVGGPKPAAKSAKSF 120
RGPRHHGNCRQPAPTAGKRGPEPRYSLGLRAAQGESLRPPAPASLHVGGPKPAAKSAKSF
Sbjct: 61 RGPRHHGNCRQPAPTAGKRGPEPRYSLGLRAAQGESLRPPAPASLHVGGPKPAAKSAKSF 120
Query: 121 PRRLRDRKCLGPGGGRTRVAASALSLGSVPLPAFLPRPSPWQLGRRERGLRAEWVGEPPG 180
PRRLRDRKCLGPGGGRTRVAASALSLGSVPLPAFLPRPSPWQLGRRERGLRAEWVGEPPG
Sbjct: 121 PRRLRDRKCLGPGGGRTRVAASALSLGSVPLPAFLPRPSPWQLGRRERGLRAEWVGEPPG 180
Query: 181 SIRQPTRSDEGAPLKEN 197
SIRQPTRSDEGAPLKEN
Sbjct: 181 SIRQPTRSDEGAPLKEN 197
>gi|239757419 PREDICTED: hypothetical protein [Homo sapiens]
Length = 164
Score = 333 bits (855), Expect = 4e-92
Identities = 159/161 (98%), Positives = 159/161 (98%)
Query: 37 FAALGQESGDGEEQLHATWDLALPRGPRHHGNCRQPAPTAGKRGPEPRYSLGLRAAQGES 96
F LGQESGDGEEQLHATWDLALPRGPRHHGNCRQPAPTAGKRGPEPRYSLGLRAAQGES
Sbjct: 4 FPNLGQESGDGEEQLHATWDLALPRGPRHHGNCRQPAPTAGKRGPEPRYSLGLRAAQGES 63
Query: 97 LRPPAPASLHVGGPKPAAKSAKSFPRRLRDRKCLGPGGGRTRVAASALSLGSVPLPAFLP 156
LRPPAPASLHVGGPKPAAKSAKSFPRRLRDRKCLGPGGGRTRVAASALSLGSVPLPAFLP
Sbjct: 64 LRPPAPASLHVGGPKPAAKSAKSFPRRLRDRKCLGPGGGRTRVAASALSLGSVPLPAFLP 123
Query: 157 RPSPWQLGRRERGLRAEWVGEPPGSIRQPTRSDEGAPLKEN 197
RPSPWQLGRRERGLRAEWVGEPPGSIRQPTRSDEGAPLKEN
Sbjct: 124 RPSPWQLGRRERGLRAEWVGEPPGSIRQPTRSDEGAPLKEN 164
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 43.5 bits (101), Expect = 1e-04
Identities = 40/132 (30%), Positives = 54/132 (40%), Gaps = 17/132 (12%)
Query: 60 PRGPRHHGNCRQPA-PTAGKRGPEPRYSLGLRAAQGESLRPPAPASLHVGGPK-PAAKSA 117
P GP+ G P GK+ P P + + ++ P P + VGG P+A
Sbjct: 232 PMGPKGGGAASSVGGPNGGKQHPPPTTPISVSSSGASGAPPTKPPTTPVGGGNLPSAPPP 291
Query: 118 KSFPR---RLRDRKCLGPGGGRTRVAASALSLGSVPLPAFLPRPSPWQLGRRERGLRAEW 174
+FP L L P +AS LG+ PLP L PSP +G+ GL
Sbjct: 292 ANFPHVTPNLPPPPALRP---LNNASASPPGLGAQPLPGHL--PSPHAMGQGMGGL---- 342
Query: 175 VGEPPGSIRQPT 186
PPG + PT
Sbjct: 343 ---PPGPEKGPT 351
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 43.5 bits (101), Expect = 1e-04
Identities = 40/132 (30%), Positives = 54/132 (40%), Gaps = 17/132 (12%)
Query: 60 PRGPRHHGNCRQPA-PTAGKRGPEPRYSLGLRAAQGESLRPPAPASLHVGGPK-PAAKSA 117
P GP+ G P GK+ P P + + ++ P P + VGG P+A
Sbjct: 232 PMGPKGGGAASSVGGPNGGKQHPPPTTPISVSSSGASGAPPTKPPTTPVGGGNLPSAPPP 291
Query: 118 KSFPR---RLRDRKCLGPGGGRTRVAASALSLGSVPLPAFLPRPSPWQLGRRERGLRAEW 174
+FP L L P +AS LG+ PLP L PSP +G+ GL
Sbjct: 292 ANFPHVTPNLPPPPALRP---LNNASASPPGLGAQPLPGHL--PSPHAMGQGMGGL---- 342
Query: 175 VGEPPGSIRQPT 186
PPG + PT
Sbjct: 343 ---PPGPEKGPT 351
>gi|239757467 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 41.6 bits (96), Expect = 4e-04
Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 14/121 (11%)
Query: 44 SGDGEEQLHATWDLALPRGPRHHGNCRQPAPTAGKRGPEPRYSLG-LRAAQGESLRPPAP 102
+G G E L W G +P P A R P R + +R+ +G + PAP
Sbjct: 38 AGRGLEALGRDW----------RGTVAEPRPEAQGRVPSFRSNARRVRSVRGGGVTAPAP 87
Query: 103 ASLHVGGPKP---AAKSAKSFPRRLRDRKCLGPGGGRTRVAASALSLGSVPLPAFLPRPS 159
VG +P AA++A + PR LR R R A ++ + P P+ P PS
Sbjct: 88 PDAEVGSGRPAGLAARAAAAAPRSLRKPSPSPSPSLRRRRARNSPGIRPSPSPSPSPSPS 147
Query: 160 P 160
P
Sbjct: 148 P 148
>gi|239751993 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 41.6 bits (96), Expect = 4e-04
Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 14/121 (11%)
Query: 44 SGDGEEQLHATWDLALPRGPRHHGNCRQPAPTAGKRGPEPRYSLG-LRAAQGESLRPPAP 102
+G G E L W G +P P A R P R + +R+ +G + PAP
Sbjct: 38 AGRGLEALGRDW----------RGTVAEPRPEAQGRVPSFRSNARRVRSVRGGGVTAPAP 87
Query: 103 ASLHVGGPKP---AAKSAKSFPRRLRDRKCLGPGGGRTRVAASALSLGSVPLPAFLPRPS 159
VG +P AA++A + PR LR R R A ++ + P P+ P PS
Sbjct: 88 PDAEVGSGRPAGLAARAAAAAPRSLRKPSPSPSPSLRRRRARNSPGIRPSPSPSPSPSPS 147
Query: 160 P 160
P
Sbjct: 148 P 148
>gi|239746476 PREDICTED: hypothetical protein [Homo sapiens]
Length = 278
Score = 41.6 bits (96), Expect = 4e-04
Identities = 36/121 (29%), Positives = 51/121 (42%), Gaps = 14/121 (11%)
Query: 44 SGDGEEQLHATWDLALPRGPRHHGNCRQPAPTAGKRGPEPRYSLG-LRAAQGESLRPPAP 102
+G G E L W G +P P A R P R + +R+ +G + PAP
Sbjct: 38 AGRGLEALGRDW----------RGTVAEPRPEAQGRVPSFRSNARRVRSVRGGGVTAPAP 87
Query: 103 ASLHVGGPKP---AAKSAKSFPRRLRDRKCLGPGGGRTRVAASALSLGSVPLPAFLPRPS 159
VG +P AA++A + PR LR R R A ++ + P P+ P PS
Sbjct: 88 PDAEVGSGRPAGLAARAAAAAPRSLRKPSPSPSPSLRRRRARNSPGIRPSPSPSPSPSPS 147
Query: 160 P 160
P
Sbjct: 148 P 148
>gi|239746530 PREDICTED: hypothetical protein XP_002343754 [Homo
sapiens]
Length = 536
Score = 37.7 bits (86), Expect = 0.006
Identities = 40/121 (33%), Positives = 46/121 (38%), Gaps = 12/121 (9%)
Query: 63 PRHHGNCRQPAPTAGKRGPEPRYSLGLRAAQGESLRPPAPASLHVGGPKPAAKSAKSFPR 122
PRH P A RG P L RP P G P+P+ + PR
Sbjct: 129 PRHR-------PRALGRGRRPLRGRVLLRQLDPFTRPRFPLQFFQGCPQPSRCLGRLEPR 181
Query: 123 RLRDRKCLGPGGGRT---RVAASALSLGSVPLPAFLPRPSPWQLGRRERGLRAEWVGEPP 179
R R L PGG R +V A PLPA P LG RG RA+ G+P
Sbjct: 182 RWRGHG-LQPGGARAPGLQVPAPPGPASPAPLPARQPHKGVRPLGCC-RGGRAQAAGQPR 239
Query: 180 G 180
G
Sbjct: 240 G 240
>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 426
Score = 37.4 bits (85), Expect = 0.008
Identities = 39/139 (28%), Positives = 51/139 (36%), Gaps = 19/139 (13%)
Query: 59 LPRGPRHHGNCRQPAPTAGKRGPEPRYSLGLRAAQGESLRPPAPASLHVGGPKPAAKSAK 118
+ RG R + R PAP + P+P +G PA S P P + +
Sbjct: 1 MERGQRFTPHPRTPAPGCPEVAPQP---------EGTDAPGPAVCSPTARAPPPILPAPQ 51
Query: 119 SFPRRLRDRKCLGPGGGRTRVAASALS------LGSVPLPAFLPRPSPWQLGRRERGLRA 172
P R R+ + G T V A+ L+ LG VPL P P R RG
Sbjct: 52 RPPTRAREWEGAAWAAGATGVGAALLALPGSRRLGRVPLTFREASPGPAPGAPRARGS-- 109
Query: 173 EWVGEPPGSIRQPTRSDEG 191
G PG R+ S G
Sbjct: 110 --CGREPGPRRRRAPSSAG 126
Score = 28.5 bits (62), Expect = 3.9
Identities = 35/110 (31%), Positives = 41/110 (37%), Gaps = 19/110 (17%)
Query: 60 PRGPRHHGNCRQPAPTAGKRGPEPRYSLGLRAAQGESLRPPAPASLHVGGPKPAAKSAKS 119
P PR H CR+ +R P P+ L+ G S PP A+ G P S
Sbjct: 161 PSLPRRH--CRRHCRCHCRRRPLPKPP-PLQPRLG-SASPPRLAAPLAGSRAP---SLSP 213
Query: 120 FPRRLRDRKCLGPGGGRTRVAASALSLGSVPLPAFLPRPSPWQLGRRERG 169
FPRR R R P G +PLP L R RR RG
Sbjct: 214 FPRRCRRRAERSPAG------------HGLPLPRSLSRGGEVVGARRRRG 251
>gi|239750958 PREDICTED: hypothetical protein XP_002347630 [Homo
sapiens]
Length = 229
Score = 36.6 bits (83), Expect = 0.014
Identities = 43/135 (31%), Positives = 55/135 (40%), Gaps = 20/135 (14%)
Query: 60 PRGPRHHGNCRQPAPTAGKRGPEPRYSLGL-RAAQGE----SLRPPAPASL--HVGGPKP 112
PRGP G R +AG +G + R L L R QG + PP+P S G P+P
Sbjct: 6 PRGPHQGGTPRPLPASAGAQGSQARSGLRLCRTTQGRPAGGASPPPSPRSRPEGPGPPRP 65
Query: 113 AAKSAKSFPRRLRDRKCLGPGGGRTRVAASALSLGSVPLPAFLPRPSPWQLGRRERGLRA 172
A SA+ P+ L GP R+R A P A R ++GR RG
Sbjct: 66 ATPSARR-PQGLSAGVSAGP-AQRSRPLQLAGPRDRAPARALHART---RMGRAARG--- 117
Query: 173 EWVGEPPGSIRQPTR 187
PP R P +
Sbjct: 118 -----PPAPSRGPLK 127
>gi|239745364 PREDICTED: hypothetical protein XP_002343480 [Homo
sapiens]
Length = 229
Score = 36.6 bits (83), Expect = 0.014
Identities = 43/135 (31%), Positives = 55/135 (40%), Gaps = 20/135 (14%)
Query: 60 PRGPRHHGNCRQPAPTAGKRGPEPRYSLGL-RAAQGE----SLRPPAPASL--HVGGPKP 112
PRGP G R +AG +G + R L L R QG + PP+P S G P+P
Sbjct: 6 PRGPHQGGTPRPLPASAGAQGSQARSGLRLCRTTQGRPAGGASPPPSPRSRPEGPGPPRP 65
Query: 113 AAKSAKSFPRRLRDRKCLGPGGGRTRVAASALSLGSVPLPAFLPRPSPWQLGRRERGLRA 172
A SA+ P+ L GP R+R A P A R ++GR RG
Sbjct: 66 ATPSARR-PQGLSAGVSAGP-AQRSRPLQLAGPRDRAPARALHART---RMGRAARG--- 117
Query: 173 EWVGEPPGSIRQPTR 187
PP R P +
Sbjct: 118 -----PPAPSRGPLK 127
>gi|239747614 PREDICTED: similar to Putative uncharacterized protein
FLJ44672 [Homo sapiens]
Length = 259
Score = 36.2 bits (82), Expect = 0.019
Identities = 39/120 (32%), Positives = 47/120 (39%), Gaps = 25/120 (20%)
Query: 55 WDLALPRGPRHHGNCRQP----APTAGKRGPE---PRYSLGLRAAQGESLRPPAPASL-- 105
W L P G R G+ R A +AG PE R SLGL AA P L
Sbjct: 100 WHLQAPNGLRSVGSSRPSLGLLAASAGPNRPEVGLSRPSLGLPAASAGPSHPQIGLELGL 159
Query: 106 ---HVGGPKP-AAKSAKSFPRRLRDRKCLGPGGGRTRVAASALSLGSVPLPAFLPRPSPW 161
VG P P + SA S PG RV+ S S +P+ +F +PS W
Sbjct: 160 EEQQVGLPGPNSVLSAAS------------PGAKLPRVSLSRPSSSCLPVASFXAQPSSW 207
>gi|239744552 PREDICTED: hypothetical protein [Homo sapiens]
Length = 221
Score = 35.0 bits (79), Expect = 0.041
Identities = 45/183 (24%), Positives = 69/183 (37%), Gaps = 32/183 (17%)
Query: 22 MAHTASLPVEADHFYFAALGQESGDGEEQLH--ATWDLALPRGPRHHGNCRQPAPTA--- 76
M+ + P + +G + G G E++ A LA +G R G R A A
Sbjct: 1 MSTLSGRPFSSSSLSRETIGVQPGWGGEEVQGLARAGLATGKGQRPPGPGRVRAAQARAR 60
Query: 77 ---GKRGPEPRYSLGLRAAQGESLRPPAPASLHVGGPKPAAKSAKSFPRRLRDRKCLGPG 133
G R + G RAA+G + P P+S G +PA + S R L
Sbjct: 61 RGGGARERPAEGARGPRAARGGARAAPMPSSAPRGPTEPALRRPSSAERPL--------- 111
Query: 134 GGRTRVAASALSLGSVPLPAFLPRPSPWQLGRRERGLRAEWVGEPPGSIRQPTRSDEGAP 193
+ +S+ S+G P P S +E G+P G +P R ++ P
Sbjct: 112 ---AQAPSSSASVGRAPGAMASPSRS------------SEATGKPRGRDGRPRREEDDVP 156
Query: 194 LKE 196
+E
Sbjct: 157 PEE 159
>gi|23510413 sorting nexin 26 [Homo sapiens]
Length = 1126
Score = 35.0 bits (79), Expect = 0.041
Identities = 37/123 (30%), Positives = 42/123 (34%), Gaps = 26/123 (21%)
Query: 83 PRYSLGLRAAQGESLRPPAPASLHVG------GPKPAAKSAKSFPRRLRDRKCLGPGGGR 136
P LG A Q + RP P L+V GP PA+ S+ S P R R GP R
Sbjct: 985 PPDHLGYSAPQHPARRPTPPEPLYVNLALGPRGPSPASSSSSSPPAHPRSRSDPGPPVPR 1044
Query: 137 ----------TRVAASALSLGSVPLPAFLPRPSPWQLGR----------RERGLRAEWVG 176
R P P L R +P GR R G R E G
Sbjct: 1045 LPQKQRAPWGPRTPHRVPGPWGPPEPLLLYRAAPPAYGRGGELHRGSLYRNGGQRGEGAG 1104
Query: 177 EPP 179
PP
Sbjct: 1105 PPP 1107
>gi|169169912 PREDICTED: hypothetical protein [Homo sapiens]
Length = 184
Score = 34.7 bits (78), Expect = 0.054
Identities = 45/135 (33%), Positives = 50/135 (37%), Gaps = 16/135 (11%)
Query: 26 ASLPVEADHFYFAALGQESGDGEEQLHATWDLALPRGPRHHGNCRQPAPTAGKRGPEPRY 85
AS P A AA GQ G+ L ALP R G+ Q P RG R
Sbjct: 12 ASFPPSAP----AAPGQRGRGGDISLTHRTVGALPSVARSWGDL-QWGPCGAARGGTGRV 66
Query: 86 SLGLRAAQ---------GESLRPPAPASLHVGGPKPAAKSAKSFPRRLRDRKCLGPGGGR 136
RA G + R P + HVGGP P A A F R L + GP
Sbjct: 67 PAPPRACVCAGSWQGHLGRAARVPCASHTHVGGPGPQAGPACGF-RALGSAQSPGPATAA 125
Query: 137 TRVAAS-ALSLGSVP 150
S ALS G VP
Sbjct: 126 GAPGFSRALSPGPVP 140
>gi|53832011 calcium channel, voltage-dependent, T type, alpha 1H
subunit isoform b [Homo sapiens]
Length = 2347
Score = 34.7 bits (78), Expect = 0.054
Identities = 33/127 (25%), Positives = 45/127 (35%), Gaps = 27/127 (21%)
Query: 66 HGNCRQPAPTAGK--------RGPEPRYSLGLRAAQGESLRPPAPASLHVGGPKPAAKSA 117
HG+ R+P P G P S G ES+ A H+ GP+ A+ A
Sbjct: 533 HGSPRRPGPEPGACDTRLVRAGAPPSPPSPGRGPPDAESVHSIYHADCHIEGPQERARVA 592
Query: 118 KSFPRRLRDRKCLGPGGGRTRVAAS---ALSLGSVPLPAFLPRPSPWQLGRRERGLRAEW 174
+ AAS A LG++ P LP G G + +W
Sbjct: 593 HA----------------AATAAASLRLATGLGTMNYPTILPSGVGSGKGSTSPGPKGKW 636
Query: 175 VGEPPGS 181
G PPG+
Sbjct: 637 AGGPPGT 643
>gi|53832009 calcium channel, voltage-dependent, T type, alpha 1H
subunit isoform a [Homo sapiens]
Length = 2353
Score = 34.7 bits (78), Expect = 0.054
Identities = 33/127 (25%), Positives = 45/127 (35%), Gaps = 27/127 (21%)
Query: 66 HGNCRQPAPTAGK--------RGPEPRYSLGLRAAQGESLRPPAPASLHVGGPKPAAKSA 117
HG+ R+P P G P S G ES+ A H+ GP+ A+ A
Sbjct: 533 HGSPRRPGPEPGACDTRLVRAGAPPSPPSPGRGPPDAESVHSIYHADCHIEGPQERARVA 592
Query: 118 KSFPRRLRDRKCLGPGGGRTRVAAS---ALSLGSVPLPAFLPRPSPWQLGRRERGLRAEW 174
+ AAS A LG++ P LP G G + +W
Sbjct: 593 HA----------------AATAAASLRLATGLGTMNYPTILPSGVGSGKGSTSPGPKGKW 636
Query: 175 VGEPPGS 181
G PPG+
Sbjct: 637 AGGPPGT 643
>gi|239757749 PREDICTED: hypothetical protein [Homo sapiens]
Length = 264
Score = 34.3 bits (77), Expect = 0.070
Identities = 41/124 (33%), Positives = 48/124 (38%), Gaps = 25/124 (20%)
Query: 61 RGPRHHGNCRQPAPTAGKRGPEPRYSLGLRAA-QGESLRPPAPASLHVGGPKPAAKSAKS 119
R P C + AG RG E + G R A Q + P PA+ P P
Sbjct: 42 RPPLQRARCYR---AAGGRGRETGNAQGPRLALQARAAAPAFPAASRRSVPAP------- 91
Query: 120 FPRRLRDRKCLGPGGGRTRVAASALSLGSVPLPAFLPRPSPWQLGRRER----GLRAEWV 175
R R+ L PG VAA A+S G PL L +P P GLRA W
Sbjct: 92 -----RGRRLLLPGA----VAACAVSDGQ-PLSPPLRQPRPAARAPEGALASCGLRAGWA 141
Query: 176 GEPP 179
G PP
Sbjct: 142 GWPP 145
>gi|239752259 PREDICTED: similar to hCG1981372 [Homo sapiens]
Length = 317
Score = 34.3 bits (77), Expect = 0.070
Identities = 41/124 (33%), Positives = 48/124 (38%), Gaps = 25/124 (20%)
Query: 61 RGPRHHGNCRQPAPTAGKRGPEPRYSLGLRAA-QGESLRPPAPASLHVGGPKPAAKSAKS 119
R P C + AG RG E + G R A Q + P PA+ P P
Sbjct: 36 RPPLQRARCYR---AAGGRGRETGNAQGPRLALQARAAAPAFPAASRRSVPAP------- 85
Query: 120 FPRRLRDRKCLGPGGGRTRVAASALSLGSVPLPAFLPRPSPWQLGRRER----GLRAEWV 175
R R+ L PG VAA A+S G PL L +P P GLRA W
Sbjct: 86 -----RGRRLLLPGA----VAACAVSDGQ-PLSPPLRQPRPAARAPEGALASCGLRAGWA 135
Query: 176 GEPP 179
G PP
Sbjct: 136 GWPP 139
>gi|239749005 PREDICTED: hypothetical protein [Homo sapiens]
Length = 178
Score = 34.3 bits (77), Expect = 0.070
Identities = 41/123 (33%), Positives = 46/123 (37%), Gaps = 12/123 (9%)
Query: 38 AALGQESGDGEEQLHATWDLALPRGPRHHGNCRQPAPTAGKRGPEPRYSLGLRAAQ---- 93
AA GQ G+ L ALP R G+ Q P RG R RA
Sbjct: 14 AAPGQRGRGGDISLTHRTVGALPSVARSWGDL-QWGPCGAARGGTGRVPAPPRACVCAGS 72
Query: 94 -----GESLRPPAPASLHVGGPKPAAKSAKSFPRRLRDRKCLGPGGGRTRVAAS-ALSLG 147
G + R P + HVGGP P A A F R L + GP S ALS G
Sbjct: 73 WQGHLGRAARVPCASHTHVGGPGPQAGPACGF-RALGSAQSPGPATAAGAPGFSRALSPG 131
Query: 148 SVP 150
VP
Sbjct: 132 PVP 134
>gi|239746772 PREDICTED: similar to hCG1981372 [Homo sapiens]
Length = 317
Score = 34.3 bits (77), Expect = 0.070
Identities = 41/124 (33%), Positives = 48/124 (38%), Gaps = 25/124 (20%)
Query: 61 RGPRHHGNCRQPAPTAGKRGPEPRYSLGLRAA-QGESLRPPAPASLHVGGPKPAAKSAKS 119
R P C + AG RG E + G R A Q + P PA+ P P
Sbjct: 36 RPPLQRARCYR---AAGGRGRETGNAQGPRLALQARAAAPAFPAASRRSVPAP------- 85
Query: 120 FPRRLRDRKCLGPGGGRTRVAASALSLGSVPLPAFLPRPSPWQLGRRER----GLRAEWV 175
R R+ L PG VAA A+S G PL L +P P GLRA W
Sbjct: 86 -----RGRRLLLPGA----VAACAVSDGQ-PLSPPLRQPRPAARAPEGALASCGLRAGWA 135
Query: 176 GEPP 179
G PP
Sbjct: 136 GWPP 139
>gi|239746769 PREDICTED: similar to Serine/threonine-protein kinase
PRKX (Protein kinase PKX1) [Homo sapiens]
Length = 330
Score = 34.3 bits (77), Expect = 0.070
Identities = 41/124 (33%), Positives = 48/124 (38%), Gaps = 25/124 (20%)
Query: 61 RGPRHHGNCRQPAPTAGKRGPEPRYSLGLRAA-QGESLRPPAPASLHVGGPKPAAKSAKS 119
R P C + AG RG E + G R A Q + P PA+ P P
Sbjct: 49 RPPLQRARCYR---AAGGRGRETGNAQGPRLALQARAAAPAFPAASRRSVPAP------- 98
Query: 120 FPRRLRDRKCLGPGGGRTRVAASALSLGSVPLPAFLPRPSPWQLGRRER----GLRAEWV 175
R R+ L PG VAA A+S G PL L +P P GLRA W
Sbjct: 99 -----RGRRLLLPGA----VAACAVSDGQ-PLSPPLRQPRPAARAPEGALASCGLRAGWA 148
Query: 176 GEPP 179
G PP
Sbjct: 149 GWPP 152
>gi|239743025 PREDICTED: hypothetical protein [Homo sapiens]
Length = 178
Score = 34.3 bits (77), Expect = 0.070
Identities = 41/123 (33%), Positives = 46/123 (37%), Gaps = 12/123 (9%)
Query: 38 AALGQESGDGEEQLHATWDLALPRGPRHHGNCRQPAPTAGKRGPEPRYSLGLRAAQ---- 93
AA GQ G+ L ALP R G+ Q P RG R RA
Sbjct: 14 AAPGQRGRGGDISLTHRTVGALPSVARSWGDL-QWGPCGAARGGTGRVPAPPRACVCAGS 72
Query: 94 -----GESLRPPAPASLHVGGPKPAAKSAKSFPRRLRDRKCLGPGGGRTRVAAS-ALSLG 147
G + R P + HVGGP P A A F R L + GP S ALS G
Sbjct: 73 WQGHLGRAARVPCASHTHVGGPGPQAGPACGF-RALGSAQSPGPATAAGAPGFSRALSPG 131
Query: 148 SVP 150
VP
Sbjct: 132 PVP 134
>gi|239754149 PREDICTED: hypothetical protein XP_002345897 [Homo
sapiens]
Length = 274
Score = 33.9 bits (76), Expect = 0.092
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 139 VAASALSLGSVPLPAFLPRPSPWQLGRRERGLRAEWVGEPPGSIRQPTRSDEGAPLK 195
V AS + LG P P+ LP+ P G R++ +R +W E S R S G K
Sbjct: 36 VTASQVELGLRPGPSDLPKTEPGLRGGRKKSVRQQWWAESAASRRTLEGSAGGGEAK 92
>gi|169163728 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 33.9 bits (76), Expect = 0.092
Identities = 29/83 (34%), Positives = 37/83 (44%), Gaps = 12/83 (14%)
Query: 47 GEEQLHATWDLALPRGPRHHGNCRQPAPTAGKRGPEPRYS----LGLRAAQGESLRPPAP 102
G + TW L + RGPR PAP R PR + + RAA+G P P
Sbjct: 41 GRARRRGTW-LRVLRGPR----APSPAPALPARARPPRENRKRAVPARAARGP---PKRP 92
Query: 103 ASLHVGGPKPAAKSAKSFPRRLR 125
A GG + A+ +S PRR R
Sbjct: 93 AGGQTGGVEAASGEERSQPRRPR 115
>gi|239748685 PREDICTED: hypothetical protein XP_002346753 [Homo
sapiens]
Length = 274
Score = 33.9 bits (76), Expect = 0.092
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 139 VAASALSLGSVPLPAFLPRPSPWQLGRRERGLRAEWVGEPPGSIRQPTRSDEGAPLK 195
V AS + LG P P+ LP+ P G R++ +R +W E S R S G K
Sbjct: 36 VTASQVELGLRPGPSDLPKTEPGLRGGRKKSVRQQWWAESAASRRTLEGSAGGGEAK 92
>gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 33.9 bits (76), Expect = 0.092
Identities = 29/83 (34%), Positives = 37/83 (44%), Gaps = 12/83 (14%)
Query: 47 GEEQLHATWDLALPRGPRHHGNCRQPAPTAGKRGPEPRYS----LGLRAAQGESLRPPAP 102
G + TW L + RGPR PAP R PR + + RAA+G P P
Sbjct: 41 GRARRRGTW-LRVLRGPR----APSPAPALPARARPPRENRKRAVPARAARGP---PKRP 92
Query: 103 ASLHVGGPKPAAKSAKSFPRRLR 125
A GG + A+ +S PRR R
Sbjct: 93 AGGQTGGVEAASGEERSQPRRPR 115
>gi|239742708 PREDICTED: hypothetical protein XP_002342610 [Homo
sapiens]
Length = 274
Score = 33.9 bits (76), Expect = 0.092
Identities = 20/57 (35%), Positives = 27/57 (47%)
Query: 139 VAASALSLGSVPLPAFLPRPSPWQLGRRERGLRAEWVGEPPGSIRQPTRSDEGAPLK 195
V AS + LG P P+ LP+ P G R++ +R +W E S R S G K
Sbjct: 36 VTASQVELGLRPGPSDLPKTEPGLRGGRKKSVRQQWWAESAASRRTLEGSAGGGEAK 92
>gi|169163019 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 33.9 bits (76), Expect = 0.092
Identities = 29/83 (34%), Positives = 37/83 (44%), Gaps = 12/83 (14%)
Query: 47 GEEQLHATWDLALPRGPRHHGNCRQPAPTAGKRGPEPRYS----LGLRAAQGESLRPPAP 102
G + TW L + RGPR PAP R PR + + RAA+G P P
Sbjct: 41 GRARRRGTW-LRVLRGPR----APSPAPALPARARPPRENRKRAVPARAARGP---PKRP 92
Query: 103 ASLHVGGPKPAAKSAKSFPRRLR 125
A GG + A+ +S PRR R
Sbjct: 93 AGGQTGGVEAASGEERSQPRRPR 115
>gi|169214887 PREDICTED: similar to hCG2017976 [Homo sapiens]
Length = 271
Score = 33.5 bits (75), Expect = 0.12
Identities = 38/118 (32%), Positives = 46/118 (38%), Gaps = 14/118 (11%)
Query: 59 LPRGPRHHG--NCRQPAPTAGKRGPEPRYSLGLRAAQGESLRPPAPASLHVGGPKPAAKS 116
LP G G +CR P G RGP P + + E+ R P L G P+P A S
Sbjct: 85 LPAGTPRPGAASCRPFCPR-GSRGPMPYPAARFARGEAEARRRILPPVLPAGKPRPGAVS 143
Query: 117 AKSF-PRRLRDRKCLGPGGGR-TRVAASALSLGSVPLPAFLPR----PSPWQLGRRER 168
+ F PR R GP R R A L F PR P+P+ R R
Sbjct: 144 CRPFYPRGSR-----GPAPYRAARFARGEAEARRRILWPFYPRESRGPAPYPAARFTR 196
Score = 29.3 bits (64), Expect = 2.3
Identities = 32/109 (29%), Positives = 44/109 (40%), Gaps = 21/109 (19%)
Query: 78 KRGPEPRYSLGLRAAQGESLRPPAPASLHVGGPKPAAKSAKSF-PRRLRD-------RKC 129
K G + Y +G ++ + L P PA G P+P A S + F PR R R
Sbjct: 62 KVGADIGYLIGPCSSAADILPPILPA----GTPRPGAASCRPFCPRGSRGPMPYPAARFA 117
Query: 130 LGPGGGRTRVAASALSL-----GSVPLPAFLPR----PSPWQLGRRERG 169
G R R+ L G+V F PR P+P++ R RG
Sbjct: 118 RGEAEARRRILPPVLPAGKPRPGAVSCRPFYPRGSRGPAPYRAARFARG 166
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.135 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,697,086
Number of Sequences: 37866
Number of extensions: 683292
Number of successful extensions: 2886
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 276
Number of HSP's that attempted gapping in prelim test: 2714
Number of HSP's gapped (non-prelim): 455
length of query: 197
length of database: 18,247,518
effective HSP length: 97
effective length of query: 100
effective length of database: 14,574,516
effective search space: 1457451600
effective search space used: 1457451600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.