Guide to the Human Genome
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Name: LOC100289372 Sequence: fasta or formatted (92aa) NCBI GI: 239742733
Description:

PREDICTED: hypothetical protein XP_002342624

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4          5           1
 C cysteine            1.1          1           1
 D aspartate           2.2          2           1
 E glutamate           7.6          7           1
 F phenylalanine       1.1          1           1
 G glycine            12.0         11           1
 H histidine           3.3          3           1
 I isoleucine          1.1          1           1
 K lysine              1.1          1           1
 L leucine            13.0         12           2
 M methionine          3.3          3           1
 N asparagine          0.0          0           0
 P proline             8.7          8           3
 Q glutamine           7.6          7           1
 R arginine           12.0         11           3
 S serine              5.4          5           1
 T threonine           5.4          5           1
 V valine              8.7          8           1
 W tryptophan          0.0          0           0
 Y tyrosine            1.1          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002342624 
LOC100290231          1.000   PREDICTED: hypothetical protein XP_002346778 
ZMIZ1                 0.025   retinoic acid induced 17 
LOC100293453          0.025   PREDICTED: hypothetical protein 
LOC100288459          0.025   PREDICTED: hypothetical protein 
LOC100288459          0.025   PREDICTED: hypothetical protein XP_002343705 
LOC100291779          0.019   PREDICTED: hypothetical protein XP_002345879 
LOC100287281          0.019   PREDICTED: hypothetical protein 
LOC100287281          0.019   PREDICTED: hypothetical protein XP_002342581 
RELL2                 0.012   RELT-like 2 
RELL2                 0.012   RELT-like 2 
PUM1                  0.012   pumilio 1 isoform 2 
PUM1                  0.012   pumilio 1 isoform 1 
LOC100294390          0.012   PREDICTED: similar to hCG2041351 
LOC100293889          0.012   PREDICTED: hypothetical protein 
LOC100288514          0.012   PREDICTED: hypothetical protein 
LOC100288514          0.012   PREDICTED: hypothetical protein XP_002343198 
BCL9L                 0.012   B-cell CLL/lymphoma 9-like 
NEK9                  0.006   NIMA-related kinase 9 
SFPQ                  0.006   splicing factor proline/glutamine rich (polypyrimidin...
LOC100130897          0.006   PREDICTED: hypothetical protein 
LOC100130897          0.006   PREDICTED: hypothetical protein 
RPGRIP1L              0.006   RPGRIP1-like isoform b 
RPGRIP1L              0.006   RPGRIP1-like isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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