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Search of human proteins with 118403326
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|118403326 transmembrane protein 134 isoform b [Homo sapiens]
(180 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|118403326 transmembrane protein 134 isoform b [Homo sapiens] 367 e-102
gi|13376701 transmembrane protein 134 isoform a [Homo sapiens] 357 2e-99
gi|118403324 transmembrane protein 134 isoform c [Homo sapiens] 333 4e-92
gi|58331120 hypothetical protein LOC29058 isoform 1 [Homo sapiens] 37 0.009
gi|58331124 hypothetical protein LOC29058 isoform 2 [Homo sapiens] 37 0.009
gi|58331122 hypothetical protein LOC29058 isoform 2 [Homo sapiens] 37 0.009
gi|42476068 hypothetical protein LOC29058 isoform 2 [Homo sapiens] 37 0.009
gi|13129000 meteorin, glial cell differentiation regulator [Homo... 32 0.38
gi|239745297 PREDICTED: similar to hCG2004312 [Homo sapiens] 31 0.50
gi|239745266 PREDICTED: similar to cis-Golgi matrix protein GM13... 31 0.50
gi|42716289 erythrocyte membrane protein band 4.1 (elliptocytosi... 30 1.1
gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens] 29 2.5
gi|166197712 LSM14 homolog A isoform a [Homo sapiens] 28 3.3
gi|166197710 LSM14 homolog A isoform b [Homo sapiens] 28 3.3
gi|5174633 receptor for egg jelly-like protein precursor [Homo s... 28 3.3
gi|11321642 bromodomain containing protein 1 [Homo sapiens] 28 3.3
gi|134288865 solute carrier family 4, sodium bicarbonate cotrans... 28 5.6
gi|94721342 zinc finger and BTB domain containing 8A [Homo sapiens] 28 5.6
gi|55769585 HEF-like protein [Homo sapiens] 28 5.6
gi|30795117 F-box only protein, helicase, 18 isoform 1 [Homo sap... 28 5.6
gi|30795119 F-box only protein, helicase, 18 isoform 2 [Homo sap... 28 5.6
gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens] 28 5.6
gi|239755873 PREDICTED: hypothetical protein [Homo sapiens] 27 7.3
gi|239750345 PREDICTED: hypothetical protein XP_002347375 [Homo ... 27 7.3
gi|239744649 PREDICTED: hypothetical protein XP_002343213 [Homo ... 27 7.3
gi|149274653 patched domain containing 2 [Homo sapiens] 27 7.3
gi|239755851 PREDICTED: hypothetical protein [Homo sapiens] 27 9.5
gi|239750367 PREDICTED: hypothetical protein XP_002347407 [Homo ... 27 9.5
gi|239744671 PREDICTED: hypothetical protein XP_002343233 [Homo ... 27 9.5
gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens] 27 9.5
>gi|118403326 transmembrane protein 134 isoform b [Homo sapiens]
Length = 180
Score = 367 bits (943), Expect = e-102
Identities = 180/180 (100%), Positives = 180/180 (100%)
Query: 1 MSAARPQFSIDDAFELSLEDGGPGPESSGVARFGPLHFERRARFEVADEDKQSRLRYQNL 60
MSAARPQFSIDDAFELSLEDGGPGPESSGVARFGPLHFERRARFEVADEDKQSRLRYQNL
Sbjct: 1 MSAARPQFSIDDAFELSLEDGGPGPESSGVARFGPLHFERRARFEVADEDKQSRLRYQNL 60
Query: 61 ENDEDGAQASPEPDGGVGTRDSSRTSIRSSQWSFSTISSSTQRSYNTCCSWTQHPLIQKN 120
ENDEDGAQASPEPDGGVGTRDSSRTSIRSSQWSFSTISSSTQRSYNTCCSWTQHPLIQKN
Sbjct: 61 ENDEDGAQASPEPDGGVGTRDSSRTSIRSSQWSFSTISSSTQRSYNTCCSWTQHPLIQKN 120
Query: 121 RRVVLASFLLLLLGLGVSSAIFFVPGFLLLVPGVYHVIFIYCAVKGHRGFQFFYLPYFEK 180
RRVVLASFLLLLLGLGVSSAIFFVPGFLLLVPGVYHVIFIYCAVKGHRGFQFFYLPYFEK
Sbjct: 121 RRVVLASFLLLLLGLGVSSAIFFVPGFLLLVPGVYHVIFIYCAVKGHRGFQFFYLPYFEK 180
>gi|13376701 transmembrane protein 134 isoform a [Homo sapiens]
Length = 195
Score = 357 bits (917), Expect = 2e-99
Identities = 180/195 (92%), Positives = 180/195 (92%), Gaps = 15/195 (7%)
Query: 1 MSAARPQFSIDDAFELSLEDGGPGPESSGVARFGPLHFERRARFEVADEDKQSRLRYQNL 60
MSAARPQFSIDDAFELSLEDGGPGPESSGVARFGPLHFERRARFEVADEDKQSRLRYQNL
Sbjct: 1 MSAARPQFSIDDAFELSLEDGGPGPESSGVARFGPLHFERRARFEVADEDKQSRLRYQNL 60
Query: 61 ENDEDGAQASPEPDGGVGTRDSSRTSIRSSQWSFSTISSSTQRSYNTCCSWTQHPLIQKN 120
ENDEDGAQASPEPDGGVGTRDSSRTSIRSSQWSFSTISSSTQRSYNTCCSWTQHPLIQKN
Sbjct: 61 ENDEDGAQASPEPDGGVGTRDSSRTSIRSSQWSFSTISSSTQRSYNTCCSWTQHPLIQKN 120
Query: 121 RRVVLASFLLLLLGL---------------GVSSAIFFVPGFLLLVPGVYHVIFIYCAVK 165
RRVVLASFLLLLLGL GVSSAIFFVPGFLLLVPGVYHVIFIYCAVK
Sbjct: 121 RRVVLASFLLLLLGLVLILVGVGLEATPSPGVSSAIFFVPGFLLLVPGVYHVIFIYCAVK 180
Query: 166 GHRGFQFFYLPYFEK 180
GHRGFQFFYLPYFEK
Sbjct: 181 GHRGFQFFYLPYFEK 195
>gi|118403324 transmembrane protein 134 isoform c [Homo sapiens]
Length = 186
Score = 333 bits (855), Expect = 4e-92
Identities = 171/195 (87%), Positives = 171/195 (87%), Gaps = 24/195 (12%)
Query: 1 MSAARPQFSIDDAFELSLEDGGPGPESSGVARFGPLHFERRARFEVADEDKQSRLRYQNL 60
MSAARPQFSIDDAFELSLEDGGPGPESSGVARFGPLHFERRARFEVADEDKQSRLRYQNL
Sbjct: 1 MSAARPQFSIDDAFELSLEDGGPGPESSGVARFGPLHFERRARFEVADEDKQSRLRYQNL 60
Query: 61 ENDEDGAQASPEPDGGVGTRDSSRTSIRSSQWSFSTISSSTQRSYNTCCSWTQHPLIQKN 120
ENDEDGAQASPEPDGGVGT SSQWSFSTISSSTQRSYNTCCSWTQHPLIQKN
Sbjct: 61 ENDEDGAQASPEPDGGVGT---------SSQWSFSTISSSTQRSYNTCCSWTQHPLIQKN 111
Query: 121 RRVVLASFLLLLLGL---------------GVSSAIFFVPGFLLLVPGVYHVIFIYCAVK 165
RRVVLASFLLLLLGL GVSSAIFFVPGFLLLVPGVYHVIFIYCAVK
Sbjct: 112 RRVVLASFLLLLLGLVLILVGVGLEATPSPGVSSAIFFVPGFLLLVPGVYHVIFIYCAVK 171
Query: 166 GHRGFQFFYLPYFEK 180
GHRGFQFFYLPYFEK
Sbjct: 172 GHRGFQFFYLPYFEK 186
>gi|58331120 hypothetical protein LOC29058 isoform 1 [Homo sapiens]
Length = 183
Score = 37.0 bits (84), Expect = 0.009
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 15/116 (12%)
Query: 79 TRDSSRTSIRSSQWSFSTISSSTQRSYNTCCSWTQHPLIQKNRRVVLASFL--------- 129
+R + T I SS+ +S +SS+ + T + K + FL
Sbjct: 67 SRTNLATGIPSSKVKYSRLSSTDDGYIDLQFKKTPPKIPYKAIALATVLFLIGAFLIIIG 126
Query: 130 -LLLLGL----GVSSAI-FFVPGFLLLVPGVYHVIFIYCAVKGHRGFQFFYLPYFE 179
LLL G G A+ + G L+ +PG YH+ Y A KG+RG+ + +P F+
Sbjct: 127 SLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDFD 182
>gi|58331124 hypothetical protein LOC29058 isoform 2 [Homo sapiens]
Length = 120
Score = 37.0 bits (84), Expect = 0.009
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 15/116 (12%)
Query: 79 TRDSSRTSIRSSQWSFSTISSSTQRSYNTCCSWTQHPLIQKNRRVVLASFL--------- 129
+R + T I SS+ +S +SS+ + T + K + FL
Sbjct: 4 SRTNLATGIPSSKVKYSRLSSTDDGYIDLQFKKTPPKIPYKAIALATVLFLIGAFLIIIG 63
Query: 130 -LLLLGL----GVSSAI-FFVPGFLLLVPGVYHVIFIYCAVKGHRGFQFFYLPYFE 179
LLL G G A+ + G L+ +PG YH+ Y A KG+RG+ + +P F+
Sbjct: 64 SLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDFD 119
>gi|58331122 hypothetical protein LOC29058 isoform 2 [Homo sapiens]
Length = 120
Score = 37.0 bits (84), Expect = 0.009
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 15/116 (12%)
Query: 79 TRDSSRTSIRSSQWSFSTISSSTQRSYNTCCSWTQHPLIQKNRRVVLASFL--------- 129
+R + T I SS+ +S +SS+ + T + K + FL
Sbjct: 4 SRTNLATGIPSSKVKYSRLSSTDDGYIDLQFKKTPPKIPYKAIALATVLFLIGAFLIIIG 63
Query: 130 -LLLLGL----GVSSAI-FFVPGFLLLVPGVYHVIFIYCAVKGHRGFQFFYLPYFE 179
LLL G G A+ + G L+ +PG YH+ Y A KG+RG+ + +P F+
Sbjct: 64 SLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDFD 119
>gi|42476068 hypothetical protein LOC29058 isoform 2 [Homo sapiens]
Length = 120
Score = 37.0 bits (84), Expect = 0.009
Identities = 32/116 (27%), Positives = 51/116 (43%), Gaps = 15/116 (12%)
Query: 79 TRDSSRTSIRSSQWSFSTISSSTQRSYNTCCSWTQHPLIQKNRRVVLASFL--------- 129
+R + T I SS+ +S +SS+ + T + K + FL
Sbjct: 4 SRTNLATGIPSSKVKYSRLSSTDDGYIDLQFKKTPPKIPYKAIALATVLFLIGAFLIIIG 63
Query: 130 -LLLLGL----GVSSAI-FFVPGFLLLVPGVYHVIFIYCAVKGHRGFQFFYLPYFE 179
LLL G G A+ + G L+ +PG YH+ Y A KG+RG+ + +P F+
Sbjct: 64 SLLLSGYISKGGADRAVPVLIIGILVFLPGFYHLRIAYYASKGYRGYSYDDIPDFD 119
>gi|13129000 meteorin, glial cell differentiation regulator [Homo
sapiens]
Length = 293
Score = 31.6 bits (70), Expect = 0.38
Identities = 27/74 (36%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 13 AFELSLEDGGPGPESSGVARFGPLHFERRARFEVA--DEDKQSRLRYQNLENDEDGAQAS 70
A EL L +G PGP R+GP ERRA F A +D R+ E EDG
Sbjct: 102 ALELLLAEG-PGPAGGRCVRWGPR--ERRALFLQATPHQDISRRVAAFRFELREDGRPEL 158
Query: 71 PEPDGGVGTRDSSR 84
P G+G + R
Sbjct: 159 PPQAHGLGVDGACR 172
>gi|239745297 PREDICTED: similar to hCG2004312 [Homo sapiens]
Length = 131
Score = 31.2 bits (69), Expect = 0.50
Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 19 EDGGPGPESSGVARFGPLHFERRARFEVADEDKQSRLRYQNLENDEDG-AQASPEPDGGV 77
E P PES G + FG H + E E +R + Q G QA P P G
Sbjct: 48 EVAAPAPESGGESVFGETHRALQGAMEKLQESTSARGQCQRRSTGRGGHRQAGPGPGGDE 107
Query: 78 G 78
G
Sbjct: 108 G 108
>gi|239745266 PREDICTED: similar to cis-Golgi matrix protein GM130
[Homo sapiens]
Length = 131
Score = 31.2 bits (69), Expect = 0.50
Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 19 EDGGPGPESSGVARFGPLHFERRARFEVADEDKQSRLRYQNLENDEDG-AQASPEPDGGV 77
E P PES G + FG H + E E +R + Q G QA P P G
Sbjct: 48 EVAAPAPESGGESVFGETHRALQGAMEKLQESTSARGQCQRRSTGRGGHRQAGPGPGGDE 107
Query: 78 G 78
G
Sbjct: 108 G 108
>gi|42716289 erythrocyte membrane protein band 4.1 (elliptocytosis
1, RH-linked) isoform 1 [Homo sapiens]
Length = 775
Score = 30.0 bits (66), Expect = 1.1
Identities = 24/107 (22%), Positives = 43/107 (40%), Gaps = 4/107 (3%)
Query: 2 SAARPQFSIDDAFELSLEDGGPGPESSGVARFGPLH----FERRARFEVADEDKQSRLRY 57
++ R S+D A + D P P S+ G + + A+ V + ++ ++
Sbjct: 500 ASKRASRSLDGAAAVDSADRSPRPTSAPAITQGQVAEGGVLDASAKKTVVPKAQKETVKA 559
Query: 58 QNLENDEDGAQASPEPDGGVGTRDSSRTSIRSSQWSFSTISSSTQRS 104
+ + DE QA PEP D S+ I+ S S + + S
Sbjct: 560 EVKKEDEPPEQAEPEPTEAWKDLDKSQEEIKKHHASISELKKNFMES 606
>gi|169658367 BAH domain and coiled-coil containing 1 [Homo sapiens]
Length = 2608
Score = 28.9 bits (63), Expect = 2.5
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 61 ENDEDGAQASPEPDGGVGTRDSSRTSIRSSQWSFSTISSSTQRSYNTCCS 110
+ DEDG P GV +R +R S+ SS ST SSS S ++ CS
Sbjct: 2294 DEDEDG----PGLAAGVPSRFLARLSVSSSSSGSSTSSSSGSVSTSSLCS 2339
>gi|166197712 LSM14 homolog A isoform a [Homo sapiens]
Length = 463
Score = 28.5 bits (62), Expect = 3.3
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 29 GVARFGPLHFERRARFEVADED-----------KQSRLRYQNLENDEDGAQASPEPDGGV 77
G+ R GP+ FE+ FE A+ + +L+ LE E + D GV
Sbjct: 283 GIRRDGPMKFEKDFDFESANAQFNKEEIDREFHNKLKLKEDKLEKQEKPVNGEDKGDSGV 342
Query: 78 GTRDS 82
T++S
Sbjct: 343 DTQNS 347
>gi|166197710 LSM14 homolog A isoform b [Homo sapiens]
Length = 463
Score = 28.5 bits (62), Expect = 3.3
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 11/65 (16%)
Query: 29 GVARFGPLHFERRARFEVADED-----------KQSRLRYQNLENDEDGAQASPEPDGGV 77
G+ R GP+ FE+ FE A+ + +L+ LE E + D GV
Sbjct: 283 GIRRDGPMKFEKDFDFESANAQFNKEEIDREFHNKLKLKEDKLEKQEKPVNGEDKGDSGV 342
Query: 78 GTRDS 82
T++S
Sbjct: 343 DTQNS 347
>gi|5174633 receptor for egg jelly-like protein precursor [Homo
sapiens]
Length = 2253
Score = 28.5 bits (62), Expect = 3.3
Identities = 14/46 (30%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 91 QWSFSTISSSTQRSYNTCCSWTQHPLIQKNR---RVVLASFLLLLL 133
+W++S + STQ ++ C S Q+ NR + L+SF+L+++
Sbjct: 2115 EWNYSNLIHSTQTVFSYCVSAFQNTEFSNNRILGVLFLSSFMLVMI 2160
>gi|11321642 bromodomain containing protein 1 [Homo sapiens]
Length = 1058
Score = 28.5 bits (62), Expect = 3.3
Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Query: 45 EVADEDKQSRLRYQNLENDEDGAQASPEPDGGVGTRDSSRTSIRSSQWSFSTISSSTQRS 104
EV +E RL L N GA++ EP GG+G + + R S S+ S S
Sbjct: 809 EVEEESPGKRLD-AGLTNGFGGARSEQEPGGGLGRKATPRRRCASESSISSSNSPLCDSS 867
Query: 105 YN 106
+N
Sbjct: 868 FN 869
>gi|134288865 solute carrier family 4, sodium bicarbonate
cotransporter, member 7 [Homo sapiens]
Length = 1214
Score = 27.7 bits (60), Expect = 5.6
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 117 IQKNRRVVLASFLLLLLGLGVSSAIFFVPGFLLLVPGVYHVIFIYCAVKGHRGFQFF 173
I++ R L F+L+ L + ++S + F+P +P +Y V F+Y V +G Q F
Sbjct: 1005 IREQRVTGLMIFILMGLSVFMTSVLKFIP-----MPVLYGV-FLYMGVSSLKGIQLF 1055
>gi|94721342 zinc finger and BTB domain containing 8A [Homo sapiens]
Length = 441
Score = 27.7 bits (60), Expect = 5.6
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 6/86 (6%)
Query: 41 RARFEVADEDKQSRLRYQNLENDEDGAQASPEPDGGVGTRDSSRTSIRSSQWSFSTISSS 100
++ ++++++K + + + +G + S GG SS S S + IS
Sbjct: 119 KSSLDISEKEKDRYFSLSDKDANSNGVERSSFYSGGWQEGSSSPRSHLSPEQGTGIISGK 178
Query: 101 TQRSYNTCCSWTQHPLIQKNRRVVLA 126
+ YN HP QKN + LA
Sbjct: 179 SWNKYN------YHPASQKNTQQPLA 198
>gi|55769585 HEF-like protein [Homo sapiens]
Length = 786
Score = 27.7 bits (60), Expect = 5.6
Identities = 17/35 (48%), Positives = 20/35 (57%)
Query: 70 SPEPDGGVGTRDSSRTSIRSSQWSFSTISSSTQRS 104
SPEPD G+ SR SI SS + ST SS+ S
Sbjct: 392 SPEPDRLSGSSSDSRASIVSSCSTTSTDDSSSSSS 426
>gi|30795117 F-box only protein, helicase, 18 isoform 1 [Homo
sapiens]
Length = 1094
Score = 27.7 bits (60), Expect = 5.6
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 9/52 (17%)
Query: 29 GVARFGPLHF-------ERRARFEVADEDKQSRLRYQNLENDEDGAQASPEP 73
GV++ P H R AR E ED SRL ++ E D+D P+P
Sbjct: 193 GVSKKAPRHHLSVPCTRPREARQEA--EDSTSRLSAESGETDQDAGDVGPDP 242
>gi|30795119 F-box only protein, helicase, 18 isoform 2 [Homo
sapiens]
Length = 1043
Score = 27.7 bits (60), Expect = 5.6
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 9/52 (17%)
Query: 29 GVARFGPLHF-------ERRARFEVADEDKQSRLRYQNLENDEDGAQASPEP 73
GV++ P H R AR E ED SRL ++ E D+D P+P
Sbjct: 142 GVSKKAPRHHLSVPCTRPREARQEA--EDSTSRLSAESGETDQDAGDVGPDP 191
>gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens]
Length = 360
Score = 27.7 bits (60), Expect = 5.6
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 66 GAQASPEPDGGVGTRDSSRTSIRSSQWSFSTISSSTQRSYNTCCS 110
GA+ASP P ++ +R RSS S S+ SSS+ S ++ S
Sbjct: 174 GAEASPSPCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSS 218
>gi|239755873 PREDICTED: hypothetical protein [Homo sapiens]
Length = 577
Score = 27.3 bits (59), Expect = 7.3
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 70 SPEPDGGVGTRDSSRTSIRSSQWSFSTISSSTQRSYNT-----CCSWTQHPL 116
SP P G R S+ TS+ S + T SSST ++++ C HPL
Sbjct: 126 SPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPL 177
>gi|239750345 PREDICTED: hypothetical protein XP_002347375 [Homo
sapiens]
Length = 233
Score = 27.3 bits (59), Expect = 7.3
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 70 SPEPDGGVGTRDSSRTSIRSSQWSFSTISSSTQRSYNT-----CCSWTQHPL 116
SP P G R S+ TS+ S + T SSST ++++ C HPL
Sbjct: 126 SPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPL 177
>gi|239744649 PREDICTED: hypothetical protein XP_002343213 [Homo
sapiens]
Length = 232
Score = 27.3 bits (59), Expect = 7.3
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 70 SPEPDGGVGTRDSSRTSIRSSQWSFSTISSSTQRSYNT-----CCSWTQHPL 116
SP P G R S+ TS+ S + T SSST ++++ C HPL
Sbjct: 125 SPCPTRSSGVRSSTSTSLSSRVRAVKTKSSSTHSTWSSNHYPGGCRLRAHPL 176
>gi|149274653 patched domain containing 2 [Homo sapiens]
Length = 1392
Score = 27.3 bits (59), Expect = 7.3
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 99 SSTQRSYNTCCSWTQHPLIQKNRRVVLASFLLLLLGLGVSSAIFFVPGFLLLVPGVYHVI 158
S +R + TC W Q + + L +L LL + V++ F LLL+P + ++
Sbjct: 1158 SVLRRGFQTCEHWKQIFMEIVGVQSALCGLVLSLL-ICVAAVAVFTTHILLLLPVLLSIL 1216
Query: 159 FIYCAV 164
I C V
Sbjct: 1217 GIVCLV 1222
>gi|239755851 PREDICTED: hypothetical protein [Homo sapiens]
Length = 121
Score = 26.9 bits (58), Expect = 9.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 58 QNLENDEDGAQASPEPDGGVGTRDSSRTSIRSSQW 92
++L E+GA + E +GG R+S + R +W
Sbjct: 68 RSLREQEEGAGRTREEEGGTSGRESRKKMGRGREW 102
>gi|239750367 PREDICTED: hypothetical protein XP_002347407 [Homo
sapiens]
Length = 121
Score = 26.9 bits (58), Expect = 9.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 58 QNLENDEDGAQASPEPDGGVGTRDSSRTSIRSSQW 92
++L E+GA + E +GG R+S + R +W
Sbjct: 68 RSLREQEEGAGRTREEEGGTSGRESRKKMGRGREW 102
>gi|239744671 PREDICTED: hypothetical protein XP_002343233 [Homo
sapiens]
Length = 121
Score = 26.9 bits (58), Expect = 9.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 58 QNLENDEDGAQASPEPDGGVGTRDSSRTSIRSSQW 92
++L E+GA + E +GG R+S + R +W
Sbjct: 68 RSLREQEEGAGRTREEEGGTSGRESRKKMGRGREW 102
>gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]
Length = 352
Score = 26.9 bits (58), Expect = 9.5
Identities = 31/120 (25%), Positives = 45/120 (37%), Gaps = 12/120 (10%)
Query: 2 SAARPQFSIDDAFELSLEDGGPGPESSGVARFGPLHF--ERRARFEVADEDKQSRLRYQN 59
+A RP+ S L GG G AR H +R+R + S R +
Sbjct: 92 AAPRPEAS-SPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKK 150
Query: 60 LEND---------EDGAQASPEPDGGVGTRDSSRTSIRSSQWSFSTISSSTQRSYNTCCS 110
D G +AS P ++ +R RSS S S+ SSS+ S ++ S
Sbjct: 151 SRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSS 210
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.138 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,419,477
Number of Sequences: 37866
Number of extensions: 311794
Number of successful extensions: 1148
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1125
Number of HSP's gapped (non-prelim): 36
length of query: 180
length of database: 18,247,518
effective HSP length: 96
effective length of query: 84
effective length of database: 14,612,382
effective search space: 1227440088
effective search space used: 1227440088
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.