BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239751789 PREDICTED: hypothetical protein [Homo sapiens] (203 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239751789 PREDICTED: hypothetical protein [Homo sapiens] 410 e-115 gi|239746280 PREDICTED: hypothetical protein XP_002343722 [Homo ... 348 2e-96 gi|239746652 PREDICTED: hypothetical protein [Homo sapiens] 32 0.28 gi|239757639 PREDICTED: similar to collagen, type I, alpha 2 [Ho... 31 0.83 gi|7662162 ALEX2 protein [Homo sapiens] 30 1.4 gi|29540562 ALEX2 protein [Homo sapiens] 30 1.4 gi|209447073 synaptotagmin I [Homo sapiens] 28 4.1 gi|5032139 synaptotagmin I [Homo sapiens] 28 4.1 gi|209447070 synaptotagmin I [Homo sapiens] 28 4.1 gi|24415404 MDN1, midasin homolog [Homo sapiens] 28 4.1 gi|30061556 SRY (sex determining region Y)-box 3 [Homo sapiens] 28 5.3 gi|144922665 G protein-coupled receptor 123 [Homo sapiens] 28 5.3 gi|94538350 protocadherin 17 precursor [Homo sapiens] 28 5.3 gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precurs... 28 5.3 gi|14270487 protocadherin gamma subfamily A, 9 isoform 2 precurs... 28 5.3 gi|4503657 forkhead box H1 [Homo sapiens] 28 7.0 gi|23097308 spectrin repeat containing, nuclear envelope 1 isofo... 28 7.0 gi|154277116 spectrin repeat containing, nuclear envelope 1 isof... 28 7.0 gi|41352705 kinesin family member 3C [Homo sapiens] 28 7.0 gi|14196451 protocadherin gamma subfamily A, 11 isoform 2 precur... 28 7.0 gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precur... 28 7.0 gi|28872761 myotubularin-related protein 1 [Homo sapiens] 28 7.0 gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 27 9.1 gi|116089282 APG9 autophagy 9-like 1 [Homo sapiens] 27 9.1 gi|116089287 APG9 autophagy 9-like 1 [Homo sapiens] 27 9.1 >gi|239751789 PREDICTED: hypothetical protein [Homo sapiens] Length = 203 Score = 410 bits (1054), Expect = e-115 Identities = 203/203 (100%), Positives = 203/203 (100%) Query: 1 MAVPPLSPALKRSAQNLWVSLKLFYPLCPPQAPTHRQVSAIMGAATILDRDADTLGKQEA 60 MAVPPLSPALKRSAQNLWVSLKLFYPLCPPQAPTHRQVSAIMGAATILDRDADTLGKQEA Sbjct: 1 MAVPPLSPALKRSAQNLWVSLKLFYPLCPPQAPTHRQVSAIMGAATILDRDADTLGKQEA 60 Query: 61 VVALTALKTAGGAAREAGESRTGSLAGLHGHASCLTGRRVGCQAAAQEGFVTLLRAQVVY 120 VVALTALKTAGGAAREAGESRTGSLAGLHGHASCLTGRRVGCQAAAQEGFVTLLRAQVVY Sbjct: 61 VVALTALKTAGGAAREAGESRTGSLAGLHGHASCLTGRRVGCQAAAQEGFVTLLRAQVVY 120 Query: 121 ALAEDKVVTPVAIEVPTEATEPSTEGAGDGHEEVGIAIKEKPQPLGRLQNHVSALGGHPH 180 ALAEDKVVTPVAIEVPTEATEPSTEGAGDGHEEVGIAIKEKPQPLGRLQNHVSALGGHPH Sbjct: 121 ALAEDKVVTPVAIEVPTEATEPSTEGAGDGHEEVGIAIKEKPQPLGRLQNHVSALGGHPH 180 Query: 181 AAHSHRQGHSLAVHGSHGLTCCP 203 AAHSHRQGHSLAVHGSHGLTCCP Sbjct: 181 AAHSHRQGHSLAVHGSHGLTCCP 203 >gi|239746280 PREDICTED: hypothetical protein XP_002343722 [Homo sapiens] Length = 186 Score = 348 bits (892), Expect = 2e-96 Identities = 173/175 (98%), Positives = 173/175 (98%) Query: 29 PPQAPTHRQVSAIMGAATILDRDADTLGKQEAVVALTALKTAGGAAREAGESRTGSLAGL 88 P APTHRQVSAIMGAATILDRDADTLGKQEAVVALTALKTAGGAAREAGESRTGSLAGL Sbjct: 12 PGDAPTHRQVSAIMGAATILDRDADTLGKQEAVVALTALKTAGGAAREAGESRTGSLAGL 71 Query: 89 HGHASCLTGRRVGCQAAAQEGFVTLLRAQVVYALAEDKVVTPVAIEVPTEATEPSTEGAG 148 HGHASCLTGRRVGCQAAAQEGFVTLLRAQVVYALAEDKVVTPVAIEVPTEATEPSTEGAG Sbjct: 72 HGHASCLTGRRVGCQAAAQEGFVTLLRAQVVYALAEDKVVTPVAIEVPTEATEPSTEGAG 131 Query: 149 DGHEEVGIAIKEKPQPLGRLQNHVSALGGHPHAAHSHRQGHSLAVHGSHGLTCCP 203 DGHEEVGIAIKEKPQPLGRLQNHVSALGGHPHAAHSHRQGHSLAVHGSHGLTCCP Sbjct: 132 DGHEEVGIAIKEKPQPLGRLQNHVSALGGHPHAAHSHRQGHSLAVHGSHGLTCCP 186 >gi|239746652 PREDICTED: hypothetical protein [Homo sapiens] Length = 1513 Score = 32.3 bits (72), Expect = 0.28 Identities = 37/141 (26%), Positives = 59/141 (41%), Gaps = 13/141 (9%) Query: 52 ADTLGKQEAVVALTALKTAGGAAREAGESRTGSLAGLHGHASCLTGRRVGCQAAAQEGFV 111 A + KQ+A +T A G E + HG A+ + V + AAQ G Sbjct: 1201 AQAIAKQDAAHGITNEDAAQGVTNEVAAQGVANEDAAHGVANEVAAHGVANEDAAQ-GVA 1259 Query: 112 TLLRAQ------VVYALAEDKVVTPVAIEVPTE--ATEPSTEGAGDGHEEVGIAIKEKPQ 163 + AQ V+ +A + V VA EV + A + + +G + G+A ++ Q Sbjct: 1260 NEVAAQGVANEDAVHGVANEDAVQGVANEVEVQGIAHKDAIQGIANEDAAQGVANEDAAQ 1319 Query: 164 PLGRLQNHVSALG-GHPHAAH 183 + N V+A G + AAH Sbjct: 1320 GVA---NEVAAHGVANEDAAH 1337 >gi|239757639 PREDICTED: similar to collagen, type I, alpha 2 [Homo sapiens] Length = 2378 Score = 30.8 bits (68), Expect = 0.83 Identities = 39/155 (25%), Positives = 61/155 (39%), Gaps = 19/155 (12%) Query: 52 ADTLGKQEAVVALTALKTAGGAAREAGESRTGSLAGLHGHASCLTGRRVGCQAAAQEGFV 111 A + KQ+A +T A G E + HG A+ + V + AAQ G Sbjct: 2093 AQAIAKQDAAHGITKEDAAQGVTNEVAAQGVANEDAAHGVANEVAAHGVANEDAAQ-GVA 2151 Query: 112 TLLRAQVVYALAEDKVVTPVAIEVPTE-----------ATEPSTEGAGDGHEEVGIAIKE 160 + AQ +A + V VA EV + A E + +G + G+A ++ Sbjct: 2152 NEVAAQ---GVANEDAVQGVANEVEVQGIAHKDAIQGIANEDAAQGVANEVAAHGVANED 2208 Query: 161 KPQPLGRLQNHVSALGGHPHAAHSHRQGHSLAVHG 195 Q + N V+A G A + + +AVHG Sbjct: 2209 AAQGVA---NEVAAQGVANEDA-AQGVANEVAVHG 2239 >gi|7662162 ALEX2 protein [Homo sapiens] Length = 632 Score = 30.0 bits (66), Expect = 1.4 Identities = 29/111 (26%), Positives = 42/111 (37%), Gaps = 18/111 (16%) Query: 53 DTLGKQEAVVALTALKTAGGAAREAGESRTGSLAGLHGHASCLTGRRVGCQAAAQEGFVT 112 DT+G + A ++ + GA +A E+ AG+ A + G + A G Sbjct: 91 DTVGAEAVAPAASSAEAQSGAGSQAQEADG---AGVGPKAESVVGAAMASAIAPPPGVTE 147 Query: 113 LLRAQVVYALA-------------EDKVVTPVAIEVPTEATEPS--TEGAG 148 L A A+A + P VPTEA P+ TEG G Sbjct: 148 ALGAAEAPAMAGAPKVAEAPREAETSRAAVPPGTVVPTEAAAPTEVTEGPG 198 >gi|29540562 ALEX2 protein [Homo sapiens] Length = 632 Score = 30.0 bits (66), Expect = 1.4 Identities = 29/111 (26%), Positives = 42/111 (37%), Gaps = 18/111 (16%) Query: 53 DTLGKQEAVVALTALKTAGGAAREAGESRTGSLAGLHGHASCLTGRRVGCQAAAQEGFVT 112 DT+G + A ++ + GA +A E+ AG+ A + G + A G Sbjct: 91 DTVGAEAVAPAASSAEAQSGAGSQAQEADG---AGVGPKAESVVGAAMASAIAPPPGVTE 147 Query: 113 LLRAQVVYALA-------------EDKVVTPVAIEVPTEATEPS--TEGAG 148 L A A+A + P VPTEA P+ TEG G Sbjct: 148 ALGAAEAPAMAGAPKVAEAPREAETSRAAVPPGTVVPTEAAAPTEVTEGPG 198 >gi|209447073 synaptotagmin I [Homo sapiens] Length = 422 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%) Query: 128 VTPVAIEVPTEATEPSTEGAGDGHEEVGIAIKEK 161 VT VA +P+ ATEP++ G+G E+ +KEK Sbjct: 15 VTTVATVLPSNATEPAS--PGEGKEDAFSKLKEK 46 >gi|5032139 synaptotagmin I [Homo sapiens] Length = 422 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%) Query: 128 VTPVAIEVPTEATEPSTEGAGDGHEEVGIAIKEK 161 VT VA +P+ ATEP++ G+G E+ +KEK Sbjct: 15 VTTVATVLPSNATEPAS--PGEGKEDAFSKLKEK 46 >gi|209447070 synaptotagmin I [Homo sapiens] Length = 422 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%) Query: 128 VTPVAIEVPTEATEPSTEGAGDGHEEVGIAIKEK 161 VT VA +P+ ATEP++ G+G E+ +KEK Sbjct: 15 VTTVATVLPSNATEPAS--PGEGKEDAFSKLKEK 46 >gi|24415404 MDN1, midasin homolog [Homo sapiens] Length = 5596 Score = 28.5 bits (62), Expect = 4.1 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 7/50 (14%) Query: 124 EDKVVTPVAIEVPTEATEPSTEGAG-------DGHEEVGIAIKEKPQPLG 166 ++KV P A+++P + S + G +G EE + IKEKP+ G Sbjct: 4870 QEKVPEPEALDLPDDLNLDSEDKNGGEDTDNEEGEEENPLEIKEKPEEAG 4919 >gi|30061556 SRY (sex determining region Y)-box 3 [Homo sapiens] Length = 446 Score = 28.1 bits (61), Expect = 5.3 Identities = 46/201 (22%), Positives = 71/201 (35%), Gaps = 44/201 (21%) Query: 1 MAVPPLSPALKRSAQNLWVSLKLFYPLCPPQAPTHRQVSAIMGAATILDRDADTLGKQEA 60 M+ PP PAL + L+ + P+ PP A ++ V+A AA+ Sbjct: 287 MSSPPPPPALPPMHRYDMAGLQ-YSPMMPPGAQSYMNVAAAAAAAS-------------- 331 Query: 61 VVALTALKTAGGAAREAGESRTGSLAGLHGHASCLTGRRVGCQAAAQEGFVTLLRAQVVY 120 GG A A T + A +G AA G + Sbjct: 332 --------GYGGMAPSA----TAAAAAAYGQQPATAAAAAAAAAAMSLG--------PMG 371 Query: 121 ALAEDKVVTPVAIEVPTEATEPSTEGAGDGHEEVGIAIKEKPQPLGRLQNHVSAL-GGHP 179 ++ + + +P P A+ GD + + + + P G + S L GG Sbjct: 372 SVVKSEPSSPP----PAIASHSQRACLGDLRDMISMYLP----PGGDAADAASPLPGGRL 423 Query: 180 HAAHSHRQGHSLAVHGSHGLT 200 H H H QG AV+G+ LT Sbjct: 424 HGVHQHYQGAGTAVNGTVPLT 444 >gi|144922665 G protein-coupled receptor 123 [Homo sapiens] Length = 560 Score = 28.1 bits (61), Expect = 5.3 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 14/82 (17%) Query: 15 QNLWVSLKLFYPLCPPQAPTHRQVSAIMGAATILDRDADTLGKQEAVVALTALKTAGGAA 74 +++W + ++ CPP+ H LD + LG+ A + L G A Sbjct: 311 EDVW---QCWWACCPPRKDAH----------PALDANGAALGRA-ACLHSPGLGQPRGFA 356 Query: 75 REAGESRTGSLAGLHGHASCLT 96 G + +L GHASCL+ Sbjct: 357 HPPGPCKMTNLQAAQGHASCLS 378 >gi|94538350 protocadherin 17 precursor [Homo sapiens] Length = 1159 Score = 28.1 bits (61), Expect = 5.3 Identities = 21/74 (28%), Positives = 35/74 (47%), Gaps = 9/74 (12%) Query: 96 TGRRVGCQAAAQEGFVTLLRAQVVYALAEDKVVTPVAIEVPTEATEP---------STEG 146 TG++ C + T+L A V L + ++P+ EVP+ ++ P ST+G Sbjct: 993 TGKKTFCTFGKDKREHTILIANVKPYLKAKRALSPLLQEVPSASSSPTKACIEPCTSTKG 1052 Query: 147 AGDGHEEVGIAIKE 160 + DG E A+ E Sbjct: 1053 SLDGCEAKPGALAE 1066 >gi|11128043 protocadherin gamma subfamily A, 9 isoform 1 precursor [Homo sapiens] Length = 932 Score = 28.1 bits (61), Expect = 5.3 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 3/52 (5%) Query: 13 SAQNLWVSLKLFYPLCPPQAPTHRQVSAIMGAATILDRDADTLGKQEAVVAL 64 S QN W+S +LF P + A +LDRDA KQ VVA+ Sbjct: 598 SGQNAWLSYRLFKASEPGLFSVGLHTGEVRTARALLDRDA---LKQSLVVAV 646 >gi|14270487 protocadherin gamma subfamily A, 9 isoform 2 precursor [Homo sapiens] Length = 828 Score = 28.1 bits (61), Expect = 5.3 Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 3/52 (5%) Query: 13 SAQNLWVSLKLFYPLCPPQAPTHRQVSAIMGAATILDRDADTLGKQEAVVAL 64 S QN W+S +LF P + A +LDRDA KQ VVA+ Sbjct: 598 SGQNAWLSYRLFKASEPGLFSVGLHTGEVRTARALLDRDA---LKQSLVVAV 646 >gi|4503657 forkhead box H1 [Homo sapiens] Length = 365 Score = 27.7 bits (60), Expect = 7.0 Identities = 28/89 (31%), Positives = 34/89 (38%), Gaps = 16/89 (17%) Query: 2 AVPPLSPALKRSAQNLWVSLKLFYPLCPPQAPTHRQVSAIMGAATILDRDADTLGKQEAV 61 AVP +P L S + LW PLCP PT + + G A TL + Sbjct: 203 AVP--TPPLPSSERPLW-------PLCPLPGPTRVEGETVQGGAI----GPSTLSPEPRA 249 Query: 62 VALTALKTAGGAAREAGESRTGSLAGLHG 90 L L+ G A G S G A L G Sbjct: 250 WPLHLLQ---GTAVPGGRSSGGHRASLWG 275 >gi|23097308 spectrin repeat containing, nuclear envelope 1 isoform 2 [Homo sapiens] Length = 8749 Score = 27.7 bits (60), Expect = 7.0 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 4/89 (4%) Query: 55 LGKQEAVVALTALKTAGGAAREAGESRTGSLAG--LHGHASCLTGRRVGCQAAAQEGFVT 112 +G +E + T G +AR + G L HA CL G +G + Q+ Sbjct: 1508 VGLEEEAQSFAQFVTTGESARIKAKLTQIRRYGEELREHAQCLEGTILGHLSQQQKFEEN 1567 Query: 113 LLRAQVVYALAEDKVVTPVAIEVPTEATE 141 L + Q + EDK+ P I++ + ATE Sbjct: 1568 LRKIQQSVSEFEDKLAVP--IKICSSATE 1594 >gi|154277116 spectrin repeat containing, nuclear envelope 1 isoform 1 [Homo sapiens] Length = 8797 Score = 27.7 bits (60), Expect = 7.0 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 4/89 (4%) Query: 55 LGKQEAVVALTALKTAGGAAREAGESRTGSLAG--LHGHASCLTGRRVGCQAAAQEGFVT 112 +G +E + T G +AR + G L HA CL G +G + Q+ Sbjct: 1501 VGLEEEAQSFAQFVTTGESARIKAKLTQIRRYGEELREHAQCLEGTILGHLSQQQKFEEN 1560 Query: 113 LLRAQVVYALAEDKVVTPVAIEVPTEATE 141 L + Q + EDK+ P I++ + ATE Sbjct: 1561 LRKIQQSVSEFEDKLAVP--IKICSSATE 1587 >gi|41352705 kinesin family member 3C [Homo sapiens] Length = 793 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/51 (33%), Positives = 24/51 (47%) Query: 139 ATEPSTEGAGDGHEEVGIAIKEKPQPLGRLQNHVSALGGHPHAAHSHRQGH 189 A PS+ G G G G A E+P+ ++ +SALG A +R H Sbjct: 264 AATPSSGGGGGGGGSGGGAGGERPKEASKINLSLSALGNVIAALAGNRSTH 314 >gi|14196451 protocadherin gamma subfamily A, 11 isoform 2 precursor [Homo sapiens] Length = 837 Score = 27.7 bits (60), Expect = 7.0 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 3/54 (5%) Query: 11 KRSAQNLWVSLKLFYPLCPPQAPTHRQVSAIMGAATILDRDADTLGKQEAVVAL 64 K S QN W+S +L P + A +LDRDA KQ VVA+ Sbjct: 597 KDSGQNAWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDA---LKQSLVVAV 647 >gi|11128039 protocadherin gamma subfamily A, 11 isoform 1 precursor [Homo sapiens] Length = 935 Score = 27.7 bits (60), Expect = 7.0 Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 3/54 (5%) Query: 11 KRSAQNLWVSLKLFYPLCPPQAPTHRQVSAIMGAATILDRDADTLGKQEAVVAL 64 K S QN W+S +L P + A +LDRDA KQ VVA+ Sbjct: 597 KDSGQNAWLSYRLLKASEPGLFAVGEHTGEVRTARALLDRDA---LKQSLVVAV 647 >gi|28872761 myotubularin-related protein 1 [Homo sapiens] Length = 665 Score = 27.7 bits (60), Expect = 7.0 Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 1/76 (1%) Query: 6 LSPALKRSAQNLWVSLKLFY-PLCPPQAPTHRQVSAIMGAATILDRDADTLGKQEAVVAL 64 L P S LWV+ + + P PQ P H+ + ++ L + + L ++ A A+ Sbjct: 585 LYPVASLSHLELWVNYYVRWNPRMRPQMPIHQNLKELLAVRAELQKRVEGLQREVATRAV 644 Query: 65 TALKTAGGAAREAGES 80 ++ G + + S Sbjct: 645 SSSSERGSSPSHSATS 660 >gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo sapiens] Length = 5537 Score = 27.3 bits (59), Expect = 9.1 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%) Query: 136 PTEATEPSTEGAGDG--HEEVGIAIKEKPQPLGRL 168 P+ T P+TEG GDG + + + EK + LG+L Sbjct: 1981 PSTPTTPTTEGEGDGLSYNQRSLQRWEKDEELGQL 2015 >gi|116089282 APG9 autophagy 9-like 1 [Homo sapiens] Length = 839 Score = 27.3 bits (59), Expect = 9.1 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%) Query: 4 PPLSPALKRSAQNLWVS--LKLFYPLCPPQAPTHRQVSAIMGA 44 PPL L+ S V+ L+ F PL P QAPT R S + G+ Sbjct: 633 PPLPRDLQGSRHRAEVASALRSFSPLQPGQAPTGRAHSTMTGS 675 >gi|116089287 APG9 autophagy 9-like 1 [Homo sapiens] Length = 839 Score = 27.3 bits (59), Expect = 9.1 Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%) Query: 4 PPLSPALKRSAQNLWVS--LKLFYPLCPPQAPTHRQVSAIMGA 44 PPL L+ S V+ L+ F PL P QAPT R S + G+ Sbjct: 633 PPLPRDLQGSRHRAEVASALRSFSPLQPGQAPTGRAHSTMTGS 675 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.316 0.131 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,316,258 Number of Sequences: 37866 Number of extensions: 356183 Number of successful extensions: 1177 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 21 Number of HSP's that attempted gapping in prelim test: 1167 Number of HSP's gapped (non-prelim): 30 length of query: 203 length of database: 18,247,518 effective HSP length: 97 effective length of query: 106 effective length of database: 14,574,516 effective search space: 1544898696 effective search space used: 1544898696 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.