Guide to the Human Genome
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Name: LOC100289588 Sequence: fasta or formatted (186aa) NCBI GI: 239746280
Description:

PREDICTED: hypothetical protein XP_002343722

Not currently referenced in the text

Other entries for this name:
alt prot {203aa} PREDICTED: hypothetical protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.6         29           3
 C cysteine            2.2          4           2
 D aspartate           4.3          8           1
 E glutamate           6.5         12           2
 F phenylalanine       1.1          2           1
 G glycine            12.4         23           2
 H histidine           6.5         12           1
 I isoleucine          2.7          5           1
 K lysine              2.7          5           1
 L leucine             8.6         16           2
 M methionine          1.1          2           1
 N asparagine          1.1          2           1
 P proline             4.8          9           1
 Q glutamine           4.3          8           1
 R arginine            4.8          9           2
 S serine              4.8          9           1
 T threonine           7.5         14           1
 V valine              8.1         15           2
 W tryptophan          0.0          0           0
 Y tyrosine            1.1          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002343722 
LOC100289588          0.920   PREDICTED: hypothetical protein 
LOC653203             0.020   PREDICTED: hypothetical protein 
LOC727962             0.017   PREDICTED: similar to collagen, type I, alpha 2 [Ho...
ARMCX2                0.014   ALEX2 protein 
ARMCX2                0.014   ALEX2 protein 
SYT1                  0.009   synaptotagmin I 
SYT1                  0.009   synaptotagmin I 
SYT1                  0.009   synaptotagmin I 
MDN1                  0.009   MDN1, midasin homolog 
PCDH17                0.009   protocadherin 17 precursor 
SYNE1                 0.009   spectrin repeat containing, nuclear envelope 1 isofo...
SYNE1                 0.009   spectrin repeat containing, nuclear envelope 1 isof...
KIF3C                 0.009   kinesin family member 3C 
MLL2                  0.006   myeloid/lymphoid or mixed-lineage leukemia 2 
SOX3                  0.006   SRY (sex determining region Y)-box 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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