Guide to the Human Genome
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Name: LOC100289588 Sequence: fasta or formatted (203aa) NCBI GI: 239751789
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Other entries for this name:
alt prot {186aa} PREDICTED: hypothetical protein XP_002343722
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.3         31           3
 C cysteine            2.5          5           2
 D aspartate           2.5          5           1
 E glutamate           5.9         12           2
 F phenylalanine       1.0          2           1
 G glycine            10.3         21           2
 H histidine           5.9         12           1
 I isoleucine          2.5          5           1
 K lysine              3.4          7           1
 L leucine            10.3         21           2
 M methionine          1.0          2           1
 N asparagine          1.0          2           1
 P proline             6.9         14           2
 Q glutamine           4.9         10           1
 R arginine            4.9         10           2
 S serine              5.9         12           1
 T threonine           6.4         13           1
 V valine              7.9         16           2
 W tryptophan          0.5          1           1
 Y tyrosine            1.0          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289588          0.839   PREDICTED: hypothetical protein XP_002343722 
LOC653203             0.018   PREDICTED: hypothetical protein 
LOC727962             0.016   PREDICTED: similar to collagen, type I, alpha 2 [Ho...
ARMCX2                0.013   ALEX2 protein 
ARMCX2                0.013   ALEX2 protein 
SYT1                  0.008   synaptotagmin I 
SYT1                  0.008   synaptotagmin I 
SYT1                  0.008   synaptotagmin I 
MDN1                  0.008   MDN1, midasin homolog 
SOX3                  0.008   SRY (sex determining region Y)-box 3 
GPR123                0.008   G protein-coupled receptor 123 
PCDH17                0.008   protocadherin 17 precursor 
PCDHGA9               0.008   protocadherin gamma subfamily A, 9 isoform 1 precurs...
PCDHGA9               0.008   protocadherin gamma subfamily A, 9 isoform 2 precurs...
FOXH1                 0.008   forkhead box H1 
SYNE1                 0.008   spectrin repeat containing, nuclear envelope 1 isofo...
SYNE1                 0.008   spectrin repeat containing, nuclear envelope 1 isof...
KIF3C                 0.008   kinesin family member 3C 
PCDHGA11              0.008   protocadherin gamma subfamily A, 11 isoform 2 precur...
PCDHGA11              0.008   protocadherin gamma subfamily A, 11 isoform 1 precur...
MTMR1                 0.008   myotubularin-related protein 1 
MLL2                  0.005   myeloid/lymphoid or mixed-lineage leukemia 2 
ATG9A                 0.005   APG9 autophagy 9-like 1 
ATG9A                 0.005   APG9 autophagy 9-like 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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