Guide to the Human Genome
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Name: ZNF780A Sequence: fasta or formatted (642aa) NCBI GI: 217035156
Description:

zinc finger protein 780A isoform a

Referenced in:

Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt prot [641aa] zinc finger protein 780A isoform b
alt prot [641aa] zinc finger protein 780A isoform b
alt prot [158aa] zinc finger protein 780A isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.0         19           1
 C cysteine            5.9         38           1
 D aspartate           1.6         10           1
 E glutamate          10.0         64           2
 F phenylalanine       5.9         38           2
 G glycine             6.9         44           1
 H histidine           7.3         47           1
 I isoleucine          5.0         32           1
 K lysine             10.4         67           2
 L leucine             7.2         46           2
 M methionine          1.2          8           1
 N asparagine          4.2         27           1
 P proline             4.0         26           1
 Q glutamine           5.9         38           1
 R arginine            5.1         33           2
 S serine              6.1         39           2
 T threonine           4.5         29           2
 V valine              2.8         18           2
 W tryptophan          0.3          2           1
 Y tyrosine            2.6         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 780A isoform a 
ZNF780A               0.996   zinc finger protein 780A isoform b 
ZNF780A               0.996   zinc finger protein 780A isoform b 
ZNF780B               0.856   zinc finger protein 780B 
ZNF420                0.523   zinc finger protein 420 
ZNF546                0.520   zinc finger protein 546 
ZNF283                0.511   zinc finger protein 283 
ZNF540                0.508   zinc finger protein 540 
ZNF30                 0.508   zinc finger protein 30 isoform a 
ZNF30                 0.508   zinc finger protein 30 isoform a 
ZNF30                 0.503   zinc finger protein 30 isoform b 
ZNF607                0.487   zinc finger protein 607 
ZNF184                0.485   zinc finger protein 184 
ZNF595                0.480   zinc finger protein 595 
ZNF470                0.477   zinc finger protein 470 
ZNF569                0.469   zinc finger protein 569 
ZNF208                0.465   zinc finger protein 208 
ZNF571                0.463   zinc finger protein 571 
ZNF135                0.463   zinc finger protein 135 
ZNF726                0.461   PREDICTED: zinc finger protein 726 
ZNF726                0.461   PREDICTED: zinc finger protein 726 
ZNF726                0.461   PREDICTED: zinc finger protein 726 
ZNF665                0.461   zinc finger protein 665 
ZNF624                0.461   zinc finger protein 624 
ZNF429                0.460   zinc finger protein 429 
ZNF93                 0.458   zinc finger protein 93 
ZNF99                 0.452   zinc finger protein 99 
ZNF43                 0.452   zinc finger protein 43 
ZNF471                0.450   zinc finger protein 471 
ZNF573                0.450   zinc finger protein 573 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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