Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: ZNF780A Sequence: fasta or formatted (641aa) NCBI GI: 217035158
Description:

zinc finger protein 780A isoform b

Referenced in:

Kruppel-related Zinc Finger Proteins

Other entries for this name:
alt prot [642aa] zinc finger protein 780A isoform a
alt mRNA [641aa] zinc finger protein 780A isoform b
alt prot [158aa] zinc finger protein 780A isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             2.8         18           1
 C cysteine            5.9         38           1
 D aspartate           1.6         10           1
 E glutamate          10.0         64           2
 F phenylalanine       5.9         38           2
 G glycine             6.9         44           1
 H histidine           7.3         47           1
 I isoleucine          5.0         32           1
 K lysine             10.5         67           2
 L leucine             7.2         46           2
 M methionine          1.2          8           1
 N asparagine          4.2         27           1
 P proline             4.1         26           1
 Q glutamine           5.9         38           1
 R arginine            5.1         33           2
 S serine              6.1         39           2
 T threonine           4.5         29           2
 V valine              2.8         18           2
 W tryptophan          0.3          2           1
 Y tyrosine            2.7         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 780A isoform b 
ZNF780A               1.000   zinc finger protein 780A isoform b 
ZNF780A               0.997   zinc finger protein 780A isoform a 
ZNF780B               0.860   zinc finger protein 780B 
ZNF420                0.524   zinc finger protein 420 
ZNF546                0.523   zinc finger protein 546 
ZNF540                0.512   zinc finger protein 540 
ZNF283                0.512   zinc finger protein 283 
ZNF30                 0.508   zinc finger protein 30 isoform b 
ZNF30                 0.504   zinc finger protein 30 isoform a 
ZNF30                 0.504   zinc finger protein 30 isoform a 
ZNF184                0.489   zinc finger protein 184 
ZNF595                0.484   zinc finger protein 595 
ZNF607                0.483   zinc finger protein 607 
ZNF470                0.481   zinc finger protein 470 
ZNF569                0.473   zinc finger protein 569 
ZNF208                0.469   zinc finger protein 208 
ZNF135                0.468   zinc finger protein 135 
ZNF726                0.466   PREDICTED: zinc finger protein 726 
ZNF726                0.466   PREDICTED: zinc finger protein 726 
ZNF726                0.466   PREDICTED: zinc finger protein 726 
ZNF624                0.465   zinc finger protein 624 
ZNF571                0.465   zinc finger protein 571 
ZNF429                0.463   zinc finger protein 429 
ZNF93                 0.463   zinc finger protein 93 
ZNF665                0.463   zinc finger protein 665 
ZNF99                 0.456   zinc finger protein 99 
ZNF43                 0.455   zinc finger protein 43 
ZNF471                0.454   zinc finger protein 471 
ZNF91                 0.452   zinc finger protein 91 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press