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Search of human proteins with 239751624
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751624 PREDICTED: hypothetical protein XP_002347938 [Homo
sapiens]
(244 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751624 PREDICTED: hypothetical protein XP_002347938 [Homo ... 493 e-140
gi|239746135 PREDICTED: hypothetical protein XP_002344205 [Homo ... 493 e-140
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 44 2e-04
gi|239741585 PREDICTED: hypothetical protein XP_002342243 [Homo ... 42 6e-04
gi|145275213 coagulation factor XII precursor [Homo sapiens] 40 0.002
gi|239754516 PREDICTED: hypothetical protein [Homo sapiens] 40 0.002
gi|239757158 PREDICTED: hypothetical protein [Homo sapiens] 38 0.007
gi|239751647 PREDICTED: hypothetical protein XP_002347957 [Homo ... 38 0.007
gi|239746157 PREDICTED: hypothetical protein XP_002343679 [Homo ... 38 0.007
gi|119508426 alpha 3 type IX collagen [Homo sapiens] 38 0.007
gi|189491742 ataxin 7 isoform b [Homo sapiens] 38 0.009
gi|4506797 ataxin 7 isoform a [Homo sapiens] 38 0.009
gi|157277988 phosphodiesterase 4D isoform 1 [Homo sapiens] 37 0.012
gi|62000702 diacylglycerol kinase kappa [Homo sapiens] 37 0.012
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 37 0.016
gi|148229134 ring finger and KH domain containing 2 [Homo sapiens] 37 0.016
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 37 0.020
gi|239749077 PREDICTED: hypothetical protein XP_002346898 [Homo ... 37 0.020
gi|239743103 PREDICTED: hypothetical protein XP_002342755 [Homo ... 37 0.020
gi|239508758 PREDICTED: hypothetical protein [Homo sapiens] 37 0.020
gi|45238858 WD repeat domain 44 protein [Homo sapiens] 37 0.020
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 36 0.027
gi|148596988 mucoepidermoid carcinoma translocated 1 isoform 3 [... 36 0.027
gi|148596965 mucoepidermoid carcinoma translocated 1 isoform 1 [... 36 0.027
gi|239748415 PREDICTED: hypothetical protein [Homo sapiens] 36 0.027
gi|239742343 PREDICTED: hypothetical protein XP_002342497 [Homo ... 36 0.027
gi|118498339 EMI domain containing 2 [Homo sapiens] 36 0.027
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 36 0.027
gi|169167792 PREDICTED: similar to hCG1745223 [Homo sapiens] 36 0.035
gi|88987622 PREDICTED: similar to hCG1745223 [Homo sapiens] 36 0.035
>gi|239751624 PREDICTED: hypothetical protein XP_002347938 [Homo
sapiens]
Length = 244
Score = 493 bits (1269), Expect = e-140
Identities = 244/244 (100%), Positives = 244/244 (100%)
Query: 1 MNHQPARVATLYLSTVIARVPGPRRRALRTRSLSRGRPVVPSRRGEWPPRRPSEVGSHAG 60
MNHQPARVATLYLSTVIARVPGPRRRALRTRSLSRGRPVVPSRRGEWPPRRPSEVGSHAG
Sbjct: 1 MNHQPARVATLYLSTVIARVPGPRRRALRTRSLSRGRPVVPSRRGEWPPRRPSEVGSHAG 60
Query: 61 ALARRQLVHRVVAAVRVQEGHLVLVGRRAAAGLRAHPLPPQAPPLAQSSQPEVVDARGSL 120
ALARRQLVHRVVAAVRVQEGHLVLVGRRAAAGLRAHPLPPQAPPLAQSSQPEVVDARGSL
Sbjct: 61 ALARRQLVHRVVAAVRVQEGHLVLVGRRAAAGLRAHPLPPQAPPLAQSSQPEVVDARGSL 120
Query: 121 AGACAVAEQHRLVGRVAQAQLAHAHLQLAQPARPRPQPRTRAPPPGPRPTARTWGPPSPG 180
AGACAVAEQHRLVGRVAQAQLAHAHLQLAQPARPRPQPRTRAPPPGPRPTARTWGPPSPG
Sbjct: 121 AGACAVAEQHRLVGRVAQAQLAHAHLQLAQPARPRPQPRTRAPPPGPRPTARTWGPPSPG 180
Query: 181 RQLAQLHRIRGPLQECTLTLGQAGNPGVQGSRQAVQGDQRRSEAVAEKQALSTHPDGQHG 240
RQLAQLHRIRGPLQECTLTLGQAGNPGVQGSRQAVQGDQRRSEAVAEKQALSTHPDGQHG
Sbjct: 181 RQLAQLHRIRGPLQECTLTLGQAGNPGVQGSRQAVQGDQRRSEAVAEKQALSTHPDGQHG 240
Query: 241 AAEH 244
AAEH
Sbjct: 241 AAEH 244
>gi|239746135 PREDICTED: hypothetical protein XP_002344205 [Homo
sapiens]
Length = 244
Score = 493 bits (1269), Expect = e-140
Identities = 244/244 (100%), Positives = 244/244 (100%)
Query: 1 MNHQPARVATLYLSTVIARVPGPRRRALRTRSLSRGRPVVPSRRGEWPPRRPSEVGSHAG 60
MNHQPARVATLYLSTVIARVPGPRRRALRTRSLSRGRPVVPSRRGEWPPRRPSEVGSHAG
Sbjct: 1 MNHQPARVATLYLSTVIARVPGPRRRALRTRSLSRGRPVVPSRRGEWPPRRPSEVGSHAG 60
Query: 61 ALARRQLVHRVVAAVRVQEGHLVLVGRRAAAGLRAHPLPPQAPPLAQSSQPEVVDARGSL 120
ALARRQLVHRVVAAVRVQEGHLVLVGRRAAAGLRAHPLPPQAPPLAQSSQPEVVDARGSL
Sbjct: 61 ALARRQLVHRVVAAVRVQEGHLVLVGRRAAAGLRAHPLPPQAPPLAQSSQPEVVDARGSL 120
Query: 121 AGACAVAEQHRLVGRVAQAQLAHAHLQLAQPARPRPQPRTRAPPPGPRPTARTWGPPSPG 180
AGACAVAEQHRLVGRVAQAQLAHAHLQLAQPARPRPQPRTRAPPPGPRPTARTWGPPSPG
Sbjct: 121 AGACAVAEQHRLVGRVAQAQLAHAHLQLAQPARPRPQPRTRAPPPGPRPTARTWGPPSPG 180
Query: 181 RQLAQLHRIRGPLQECTLTLGQAGNPGVQGSRQAVQGDQRRSEAVAEKQALSTHPDGQHG 240
RQLAQLHRIRGPLQECTLTLGQAGNPGVQGSRQAVQGDQRRSEAVAEKQALSTHPDGQHG
Sbjct: 181 RQLAQLHRIRGPLQECTLTLGQAGNPGVQGSRQAVQGDQRRSEAVAEKQALSTHPDGQHG 240
Query: 241 AAEH 244
AAEH
Sbjct: 241 AAEH 244
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 43.5 bits (101), Expect = 2e-04
Identities = 66/241 (27%), Positives = 87/241 (36%), Gaps = 32/241 (13%)
Query: 8 VATLYLSTVIARVPGPRRRALRTRS--LSRGRPVVPSRRGEWPPRRPSEVGSHAGALAR- 64
V Y+ A G RA R + L+RGR V S PPR G +A
Sbjct: 355 VKAQYIPGAQAATRGLPGRAARRKPPPLTRGRSVEQS-----PPRERPRAAGRRGRMAEA 409
Query: 65 --RQLVHRVVAAVRVQEGHLVLVGRRAAAGLRAHPLPPQAPPLAQSSQPEVVDARGSLAG 122
R+ R A R Q L+GR +A P P P A+ +P R A
Sbjct: 410 SGRRGSPRARKASRSQS-ETSLLGRASAV-----PSGPPKYPTAEREEPRPPRPRRGPAP 463
Query: 123 ACAVAEQHRLVGRVAQAQLAHAHLQLAQPARPRPQ-PRTRAPPPGPRPTARTWGPPSPGR 181
A + + A + A R RP+ P R P PGP P+A P R
Sbjct: 464 TLAAQ-----AAGSCRRWRSTAEIDAADGRRVRPRAPAARVPGPGPSPSA-------PQR 511
Query: 182 QLAQLHRIRGPLQECTL-TLGQAGNPGVQGSRQAVQGDQRRSEAVAEKQALSTHPDGQHG 240
+L L+ G EC+ LG G G G G+ S + E A S+ G
Sbjct: 512 RL--LYGCAGSDSECSAGRLGPLGRRGPAGGVGGGYGESESSASEGESPAFSSASSDSDG 569
Query: 241 A 241
+
Sbjct: 570 S 570
>gi|239741585 PREDICTED: hypothetical protein XP_002342243 [Homo
sapiens]
Length = 439
Score = 41.6 bits (96), Expect = 6e-04
Identities = 65/232 (28%), Positives = 94/232 (40%), Gaps = 37/232 (15%)
Query: 17 IARVPGPRRRALRT----RSLSRGRPVVPSRRGEWPPRRPSEVGSHAGALARRQLVHRVV 72
+ R+PG R R +L R P+ P R G PR S + S A+ ++ +
Sbjct: 179 VFRLPGARLRLSSQLPSPTTLPRAAPLTPYRPGSPSPRGHSRLRSRPPTRAQLRVGANPL 238
Query: 73 AAV--RVQEGHLVLV---GRRAAAGLRAHP-----LPPQAP--PLAQS-SQPEVVDARGS 119
+ V R++ H V G R+ L P PP+ P P+ QS + P + AR +
Sbjct: 239 SPVPARLRGCHSVRPEGGGVRSCRTLGCCPPTSPHQPPRLPVTPVPQSVALPSLQSARPA 298
Query: 120 LAGACAVAEQHRLVGRVAQAQLAHAHLQLAQPARPRPQPRTRAPPPGPRPTARTWGPPSP 179
AGA RL + A+ L +P RP P R AP P PT R+ +P
Sbjct: 299 AAGAAP-----RLSPQAARCTA----LSTEKPDRPGPPRRPPAPTPVSAPTLRS----AP 345
Query: 180 GRQLAQLHRIRGPLQECTLTLGQAGNPGVQGSRQAVQGDQRRSEAVAEKQAL 231
HR+R L E ++G P + SR A R A ++ L
Sbjct: 346 ----LDAHRLRERLPES--SVGPRAEP-ARRSRNAAMVSPRHQPGKARREGL 390
>gi|145275213 coagulation factor XII precursor [Homo sapiens]
Length = 615
Score = 40.0 bits (92), Expect = 0.002
Identities = 28/65 (43%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
Query: 143 HAHLQLAQPARPRPQPRTRAPP----PGPRPTARTWGPPSPGRQ--LAQLHRIRGPLQEC 196
H L AQPA P+PQP TR PP PG P R PPS R L+ R+R L
Sbjct: 312 HVPLMPAQPAPPKPQPTTRTPPQSQTPGALPAKRE-QPPSLTRNGPLSCGQRLRKSLSSM 370
Query: 197 TLTLG 201
T +G
Sbjct: 371 TRVVG 375
>gi|239754516 PREDICTED: hypothetical protein [Homo sapiens]
Length = 334
Score = 40.0 bits (92), Expect = 0.002
Identities = 67/228 (29%), Positives = 87/228 (38%), Gaps = 36/228 (15%)
Query: 3 HQPARVATLYLSTVIARVPGPRRRALRTRSLSRGRPVVPSRRGEWPPRRPSEVGSHAGAL 62
H+P A L + RV R A R RG R E P R A
Sbjct: 89 HRPVPAAAAILRAAVHRVLRVLRAAAAVRDAERG------LRREGPRRH---------AP 133
Query: 63 ARRQLVHRVVAAVRVQEGHLVLVGRRAAAGLRAHPLPPQAPPLAQSSQPEVVDARGS-LA 121
R+QL R AA V GHL GR G P PP P+ ++ P +++ R
Sbjct: 134 PRKQLRGRRGAAGLVSAGHL---GREPPRG--GGPRPPALVPVPLAT-PLLLEGRSEPST 187
Query: 122 GACAVAEQHRLVGRVAQAQLAHAHLQLA--QPARPRPQPRTRAPPPGPRPTAR--TWGPP 177
ACAV+ GR QA L AH++ A + AR P+ + G R R GP
Sbjct: 188 RACAVS------GR--QAALLGAHVRPAPDRAARCAPRAKKAGANAGARGQGRGAAAGPE 239
Query: 178 SPGRQLAQLHRIRGPLQECTLTLGQAGNPGVQGSRQAVQGDQRRSEAV 225
P + RG + LG G G G +A + +R E V
Sbjct: 240 RPPHVQGRRPAPRGAVGARRALLGAVGKAG--GLTRARETRRRGEEGV 285
>gi|239757158 PREDICTED: hypothetical protein [Homo sapiens]
Length = 150
Score = 38.1 bits (87), Expect = 0.007
Identities = 21/37 (56%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
Query: 149 AQPAR---PRPQPRTRAPPPGPRPTARTWGP-PSPGR 181
A P+R PRP+P RAPPP R TAR W P P+ GR
Sbjct: 98 ALPSRLPSPRPRPSRRAPPPVSRRTARGWEPGPTLGR 134
>gi|239751647 PREDICTED: hypothetical protein XP_002347957 [Homo
sapiens]
Length = 150
Score = 38.1 bits (87), Expect = 0.007
Identities = 21/37 (56%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
Query: 149 AQPAR---PRPQPRTRAPPPGPRPTARTWGP-PSPGR 181
A P+R PRP+P RAPPP R TAR W P P+ GR
Sbjct: 98 ALPSRLPSPRPRPSRRAPPPVSRRTARGWEPGPTLGR 134
>gi|239746157 PREDICTED: hypothetical protein XP_002343679 [Homo
sapiens]
Length = 150
Score = 38.1 bits (87), Expect = 0.007
Identities = 21/37 (56%), Positives = 24/37 (64%), Gaps = 4/37 (10%)
Query: 149 AQPAR---PRPQPRTRAPPPGPRPTARTWGP-PSPGR 181
A P+R PRP+P RAPPP R TAR W P P+ GR
Sbjct: 98 ALPSRLPSPRPRPSRRAPPPVSRRTARGWEPGPTLGR 134
>gi|119508426 alpha 3 type IX collagen [Homo sapiens]
Length = 684
Score = 38.1 bits (87), Expect = 0.007
Identities = 47/167 (28%), Positives = 62/167 (37%), Gaps = 34/167 (20%)
Query: 86 GRRAAAGLRAHPLPPQAPPLAQSSQPEVVDARGSLAGACAVAEQHR---LVGRVAQAQLA 142
G +G++ P PP PL P V G A + R L G + Q+A
Sbjct: 481 GPNGTSGVQGVPGPPG--PLGLQGVPGVPGITGKPGVPGKEASEQRIRELCGGMISEQIA 538
Query: 143 HAHLQLAQPARP----RPQPRTRAPPPGP-----RPTARTWGPPSPGRQLAQLHRIRGPL 193
L +P P RP P PPGP P AR GPP RGP
Sbjct: 539 QLAAHLRKPLAPGSIGRPGPAGPPGPPGPPGSIGHPGAR--GPPG----------YRGP- 585
Query: 194 QECTLTLGQAGNPGVQGSRQAVQGDQRRSEAVAEKQALSTHPDGQHG 240
G+ G+PG +G+ Q +GD+ + A + P G G
Sbjct: 586 ------TGELGDPGPRGN-QGDRGDKGAAGAGLDGPEGDQGPQGPQG 625
>gi|189491742 ataxin 7 isoform b [Homo sapiens]
Length = 945
Score = 37.7 bits (86), Expect = 0.009
Identities = 30/100 (30%), Positives = 40/100 (40%), Gaps = 6/100 (6%)
Query: 115 DARGSLAGACAVAEQHRLVGRVAQAQLAHAHLQLAQPARPRPQPRTRAPPPGPRPTARTW 174
D RG A A A A A+ Q QP P+PQ + PPP R
Sbjct: 8 DVRGEPRRAAAAAGG----AAAAAARQQQQQQQQQQPPPPQPQRQQHPPPPPRRTRPEDG 63
Query: 175 GPPSPGRQLAQLHRI--RGPLQECTLTLGQAGNPGVQGSR 212
GP + A + + R PL + LGQ+ N V+ S+
Sbjct: 64 GPGAASTSAAAMATVGERRPLPSPEVMLGQSWNLWVEASK 103
>gi|4506797 ataxin 7 isoform a [Homo sapiens]
Length = 892
Score = 37.7 bits (86), Expect = 0.009
Identities = 30/100 (30%), Positives = 40/100 (40%), Gaps = 6/100 (6%)
Query: 115 DARGSLAGACAVAEQHRLVGRVAQAQLAHAHLQLAQPARPRPQPRTRAPPPGPRPTARTW 174
D RG A A A A A+ Q QP P+PQ + PPP R
Sbjct: 8 DVRGEPRRAAAAAGG----AAAAAARQQQQQQQQQQPPPPQPQRQQHPPPPPRRTRPEDG 63
Query: 175 GPPSPGRQLAQLHRI--RGPLQECTLTLGQAGNPGVQGSR 212
GP + A + + R PL + LGQ+ N V+ S+
Sbjct: 64 GPGAASTSAAAMATVGERRPLPSPEVMLGQSWNLWVEASK 103
>gi|157277988 phosphodiesterase 4D isoform 1 [Homo sapiens]
Length = 809
Score = 37.4 bits (85), Expect = 0.012
Identities = 19/53 (35%), Positives = 24/53 (45%)
Query: 128 EQHRLVGRVAQAQLAHAHLQLAQPARPRPQPRTRAPPPGPRPTARTWGPPSPG 180
+ H+ R Q +L H H L P P PQP+ + P P P PP PG
Sbjct: 37 QHHQYPLRQPQFRLLHPHHHLPPPPPPSPQPQPQCPLQPPPPPPLPPPPPPPG 89
>gi|62000702 diacylglycerol kinase kappa [Homo sapiens]
Length = 1271
Score = 37.4 bits (85), Expect = 0.012
Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 8/91 (8%)
Query: 97 PLPPQAPPLAQSSQPE-VVDARGSLA-GACAVAEQHRLVGRVAQAQLAHAHLQLAQPA-- 152
P PP APPL + PE + + LA G C A + A ++PA
Sbjct: 37 PAPPPAPPLLSEASPEPIPEPCPELAPGPCPEATSESATELYTEPTPEPATEPASEPAPE 96
Query: 153 ---RPRPQPRTR-APPPGPRPTARTWGPPSP 179
P P+P T AP P P P + P+P
Sbjct: 97 PATEPAPEPATEPAPEPAPEPATESAPEPTP 127
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 37.0 bits (84), Expect = 0.016
Identities = 43/179 (24%), Positives = 65/179 (36%), Gaps = 14/179 (7%)
Query: 5 PARVATLYLSTVIARVPGPRRRALRTRSLSRGRPVVPSRRGEWPPRRPSEVGSHAGALAR 64
P TL L+ + VP P + T SL+ G P+ P++ P P S G
Sbjct: 1710 PFPTQTLSLTPASSLVPTPAQ----TLSLAPGPPLGPTQTLSLAPAPPLAPASPVGPAP- 1764
Query: 65 RQLVHRVVAAVRVQEGHLVLVGRRAAAGLRAHPLPPQAPPLAQSSQPEVVDARGSLAGAC 124
H + A L+ L P+P P AQ+ + + A
Sbjct: 1765 ---AHTLTLAPASSSASLLAPASVQTLTLSPAPVPTLGPAAAQTLALAPASTQSPASQAS 1821
Query: 125 AVAEQHRLVGRVAQAQLAHAHLQLAQPARPRPQPRT-RAPPPGPRPTARTWGPPSPGRQ 182
++ +V A L + ++ P T R+ PP P TA ++G P P RQ
Sbjct: 1822 SL-----VVSASGAAPLPVTMVSRLPVSKDEPDTLTLRSGPPSPPSTATSFGGPRPRRQ 1875
>gi|148229134 ring finger and KH domain containing 2 [Homo sapiens]
Length = 659
Score = 37.0 bits (84), Expect = 0.016
Identities = 32/100 (32%), Positives = 40/100 (40%), Gaps = 4/100 (4%)
Query: 144 AHLQLAQPARPRPQPRTRAPPPGPRPTARTWGPPSPGRQLAQLHRIRGPLQECTLTLGQA 203
A L LA P PQP PPP P + GP G L R+ L + +
Sbjct: 7 AALALAAAPAPLPQPPPPPPPPPPPLPPPSGGPELEGDGLLLRERL-AALGLDDPSPAEP 65
Query: 204 GNPGVQGSRQAVQGDQRRSEAVAEKQALSTHPDGQHGAAE 243
G P ++ A QG RR+ AE P G+ GA E
Sbjct: 66 GAPALRAPAAAAQGQARRA---AELSPEERAPPGRPGAPE 102
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 36.6 bits (83), Expect = 0.020
Identities = 45/161 (27%), Positives = 56/161 (34%), Gaps = 19/161 (11%)
Query: 86 GRRAAAGLRAHP----LPPQAPPLAQSSQPEVVDARGSLAGACAVAEQHRLVGRVAQAQL 141
G R G R P + P + P +GS A GR +A L
Sbjct: 485 GERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPKGSPGEA----------GRPGEAGL 534
Query: 142 AHAHLQLAQPARPRPQPRTRAPPPGPRPTARTWGPPSP--GRQLAQLHRIRGPLQECTLT 199
A P P P +T PPGP GPP P R A + GP +
Sbjct: 535 PGAKGLTGSPGSPGPDGKTG--PPGPAGQDGRPGPPGPPGARGQAGVMGFPGP-KGAAGE 591
Query: 200 LGQAGNPGVQGSRQAVQGDQRRSEAVAEKQALSTHPDGQHG 240
G+AG GV G AV + EA A+ P G+ G
Sbjct: 592 PGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERG 632
Score = 32.7 bits (73), Expect = 0.30
Identities = 42/138 (30%), Positives = 46/138 (33%), Gaps = 21/138 (15%)
Query: 86 GRRAAAGLRAHPLPP-----QAPPLAQSS-----QPEVVDARGSLA--GACAVAEQHRLV 133
G R A G R P PP PP A +P A+G G A +
Sbjct: 794 GARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPI 853
Query: 134 GRVAQAQLAHAHLQLAQP-ARPRPQPRTRAPPPGPRPTARTWGPPSPGRQLAQLHRIRGP 192
G V A P A P R PPGP A GPP P A +GP
Sbjct: 854 GNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGP----AGKEGGKGP 909
Query: 193 LQECTLTLGQAGNPGVQG 210
E G AG PG G
Sbjct: 910 RGE----TGPAGRPGEVG 923
>gi|239749077 PREDICTED: hypothetical protein XP_002346898 [Homo
sapiens]
Length = 334
Score = 36.6 bits (83), Expect = 0.020
Identities = 65/228 (28%), Positives = 82/228 (35%), Gaps = 36/228 (15%)
Query: 3 HQPARVATLYLSTVIARVPGPRRRALRTRSLSRGRPVVPSRRGEWPPRRPSEVGSHAGAL 62
H+P A L + RV R A R RG R E P R A
Sbjct: 89 HRPVPAAAAILRAAVHRVLRVLRAAAAVRDAERG------LRREGPRRH---------AP 133
Query: 63 ARRQLVHRVVAAVRVQEGHLVLVGRRAAAGLRAHPLPPQAPPLAQSSQPEVVDARGS-LA 121
R+QL R AA V GHL GR G P PLA P +++ R
Sbjct: 134 PRKQLRGRRGAAGLVSAGHL---GREPPRGGGLRPPALVPVPLA---TPLLLEGRSEPST 187
Query: 122 GACAVAEQHRLVGRVAQAQLAHAHLQLA--QPARPRPQPRTRAPPPGPRPTAR--TWGPP 177
ACAV+ QA L AH++ A + AR P+ + G R R GP
Sbjct: 188 RACAVSG--------GQAALLGAHVRPAPDRAARCAPRAKKAGANAGARGQGRGAAAGPE 239
Query: 178 SPGRQLAQLHRIRGPLQECTLTLGQAGNPGVQGSRQAVQGDQRRSEAV 225
P + RG + LG G G G +A + +R E V
Sbjct: 240 RPPHVQGRRPAPRGAVGARRALLGAVGKAG--GLTRARETRRRGEEGV 285
>gi|239743103 PREDICTED: hypothetical protein XP_002342755 [Homo
sapiens]
Length = 329
Score = 36.6 bits (83), Expect = 0.020
Identities = 65/228 (28%), Positives = 82/228 (35%), Gaps = 36/228 (15%)
Query: 3 HQPARVATLYLSTVIARVPGPRRRALRTRSLSRGRPVVPSRRGEWPPRRPSEVGSHAGAL 62
H+P A L + RV R A R RG R E P R A
Sbjct: 84 HRPVPAAAAILRAAVHRVLRVLRAAAAVRDAERG------LRREGPRRH---------AP 128
Query: 63 ARRQLVHRVVAAVRVQEGHLVLVGRRAAAGLRAHPLPPQAPPLAQSSQPEVVDARGS-LA 121
R+QL R AA V GHL GR G P PLA P +++ R
Sbjct: 129 PRKQLRGRRGAAGLVSAGHL---GREPPRGGGLRPPALVPVPLA---TPLLLEGRSEPST 182
Query: 122 GACAVAEQHRLVGRVAQAQLAHAHLQLA--QPARPRPQPRTRAPPPGPRPTAR--TWGPP 177
ACAV+ QA L AH++ A + AR P+ + G R R GP
Sbjct: 183 RACAVSG--------GQAALLGAHVRPAPDRAARCAPRAKKAGANAGARGQGRGAAAGPE 234
Query: 178 SPGRQLAQLHRIRGPLQECTLTLGQAGNPGVQGSRQAVQGDQRRSEAV 225
P + RG + LG G G G +A + +R E V
Sbjct: 235 RPPHVQGRRPAPRGAVGARRALLGAVGKAG--GLTRARETRRRGEEGV 280
>gi|239508758 PREDICTED: hypothetical protein [Homo sapiens]
Length = 329
Score = 36.6 bits (83), Expect = 0.020
Identities = 65/228 (28%), Positives = 82/228 (35%), Gaps = 36/228 (15%)
Query: 3 HQPARVATLYLSTVIARVPGPRRRALRTRSLSRGRPVVPSRRGEWPPRRPSEVGSHAGAL 62
H+P A L + RV R A R RG R E P R A
Sbjct: 84 HRPVPAAAAILRAAVHRVLRVLRAAAAVRDAERG------LRREGPRRH---------AP 128
Query: 63 ARRQLVHRVVAAVRVQEGHLVLVGRRAAAGLRAHPLPPQAPPLAQSSQPEVVDARGS-LA 121
R+QL R AA V GHL GR G P PLA P +++ R
Sbjct: 129 PRKQLRGRRGAAGLVSAGHL---GREPPRGGGLRPPALVPVPLA---TPLLLEGRSEPST 182
Query: 122 GACAVAEQHRLVGRVAQAQLAHAHLQLA--QPARPRPQPRTRAPPPGPRPTAR--TWGPP 177
ACAV+ QA L AH++ A + AR P+ + G R R GP
Sbjct: 183 RACAVSG--------GQAALLGAHVRPAPDRAARCAPRAKKAGANAGARGQGRGAAAGPE 234
Query: 178 SPGRQLAQLHRIRGPLQECTLTLGQAGNPGVQGSRQAVQGDQRRSEAV 225
P + RG + LG G G G +A + +R E V
Sbjct: 235 RPPHVQGRRPAPRGAVGARRALLGAVGKAG--GLTRARETRRRGEEGV 280
>gi|45238858 WD repeat domain 44 protein [Homo sapiens]
Length = 913
Score = 36.6 bits (83), Expect = 0.020
Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 10/104 (9%)
Query: 150 QPARPRPQPRTRAPPPGPRPTARTWGPPSPGRQLAQLHRIRGP---------LQECTLTL 200
+P RP P T PPP P P +R PP + + ++ P + LT
Sbjct: 230 KPVPARPPPPTNFPPPRPPPPSRPAPPPRKRKSELEFETLKTPDIDVPKENITSDSLLTA 289
Query: 201 GQAGNPGVQGSRQAVQ-GDQRRSEAVAEKQALSTHPDGQHGAAE 243
A V+ S+ ++ + + Q PDGQ A E
Sbjct: 290 SMASESTVKDSQPSLDLASATSGDKIVTAQENGKAPDGQTVAGE 333
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 36.2 bits (82), Expect = 0.027
Identities = 30/93 (32%), Positives = 40/93 (43%), Gaps = 18/93 (19%)
Query: 87 RRAAAGLRAHPLPPQAPPLAQSSQPEVVDARGSLAGACAVAEQHRLVGRVAQAQLAHAHL 146
++A G R PP PP P+V A +L A A++ +VA+ + L
Sbjct: 703 QQAELGQRVGLFPPPPPP------PQVTSAIATLQQAAAMS----FCPQVARPLVGP--L 750
Query: 147 QLAQPARPRPQPRTRAPPPGPRPTARTWGPPSP 179
L P R PPPGP P A + GPP P
Sbjct: 751 ALGSPRL------VRRPPPGPAPAAASPGPPPP 777
Score = 34.7 bits (78), Expect = 0.078
Identities = 25/89 (28%), Positives = 30/89 (33%), Gaps = 1/89 (1%)
Query: 149 AQPARPRPQPRTRAPPPGPRPTARTWGPPSPGRQLAQLHRIRGPLQECTLTLGQAGNPGV 208
A P + P P APPPGP P A PP + GP G PG
Sbjct: 29 APPQQQPPPPPPPAPPPGPGP-APPQHPPRAEALPPEAADEGGPRGRLRSRDSSCGRPGT 87
Query: 209 QGSRQAVQGDQRRSEAVAEKQALSTHPDG 237
G+ +G E Q P+G
Sbjct: 88 PGAASTAKGSPNGECGRGEPQCSPAGPEG 116
Score = 28.1 bits (61), Expect = 7.3
Identities = 40/157 (25%), Positives = 55/157 (35%), Gaps = 42/157 (26%)
Query: 97 PLPPQAPPLAQSSQPEVVD---ARGSLAGACAVAEQHRLVGRVAQAQ--------LAHAH 145
P PPQ PP A++ PE D RG L + + G + A+
Sbjct: 49 PAPPQHPPRAEALPPEAADEGGPRGRLRSRDSSCGRPGTPGAASTAKGSPNGECGRGEPQ 108
Query: 146 LQLAQPARPRPQPR--------TRAPPPGPRPT----ARTWGPPSP--GRQLAQLHRIRG 191
A P P P+ P PGP P + GP G Q + + R G
Sbjct: 109 CSPAGPEGPARGPKVSFSCRGAASGPAPGPGPAEEAGSEEAGPAGEPRGSQASFMQRQFG 168
Query: 192 PLQECTLTLGQAGNPGVQ-------GSRQAVQGDQRR 221
L + PGV GS++AV+ +Q R
Sbjct: 169 ALLQ----------PGVNKFSLRMFGSQKAVEREQER 195
>gi|148596988 mucoepidermoid carcinoma translocated 1 isoform 3
[Homo sapiens]
Length = 650
Score = 36.2 bits (82), Expect = 0.027
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 99 PPQAPPLAQSSQPEVVDARGSLAGACAVAEQHRLVGRVAQAQLAHAHLQLAQPARPRPQP 158
P PL+ S++ A +L+ + + + + QL +A A +P PQP
Sbjct: 324 PAGVSPLSLSTEARRQQASPTLSPLSPITQAVAMDALSLEQQLPYAFFTQAGSQQPPPQP 383
Query: 159 RTRAPPPGPRPTARTWGPPSPGRQLAQLHRIRGPLQECTLTLGQAGNP 206
+ PPP P P ++ PP P + +L L +LT G P
Sbjct: 384 Q---PPPPPPPASQQPPPPPPPQAPVRLPPGGPLLPSASLTRGPQPPP 428
>gi|148596965 mucoepidermoid carcinoma translocated 1 isoform 1
[Homo sapiens]
Length = 634
Score = 36.2 bits (82), Expect = 0.027
Identities = 28/108 (25%), Positives = 45/108 (41%), Gaps = 3/108 (2%)
Query: 99 PPQAPPLAQSSQPEVVDARGSLAGACAVAEQHRLVGRVAQAQLAHAHLQLAQPARPRPQP 158
P PL+ S++ A +L+ + + + + QL +A A +P PQP
Sbjct: 308 PAGVSPLSLSTEARRQQASPTLSPLSPITQAVAMDALSLEQQLPYAFFTQAGSQQPPPQP 367
Query: 159 RTRAPPPGPRPTARTWGPPSPGRQLAQLHRIRGPLQECTLTLGQAGNP 206
+ PPP P P ++ PP P + +L L +LT G P
Sbjct: 368 Q---PPPPPPPASQQPPPPPPPQAPVRLPPGGPLLPSASLTRGPQPPP 412
>gi|239748415 PREDICTED: hypothetical protein [Homo sapiens]
Length = 208
Score = 36.2 bits (82), Expect = 0.027
Identities = 48/152 (31%), Positives = 58/152 (38%), Gaps = 27/152 (17%)
Query: 32 SLSRGRPVVPSRRGEWPPRRPSEVGSHAGALARRQLVHRVVAAVRVQEGHLVLVGRRAAA 91
S RG P PSR RR ++V AG L RR+L R A R E R
Sbjct: 29 SCGRG-PETPSRSQSPKLRRVAKV---AGQLRRRRLRQRDPPADREGE-------REVLR 77
Query: 92 GLRAHPLPPQAPPLAQSSQPEVVDARGSLAGACAVAEQHRLVGRVAQAQLAHAHLQLAQ- 150
G R P PPQ PP + + +G+ + R R A A QLA+
Sbjct: 78 GQRESPPPPQLPP----------ELLTNPSGSAIQSSPSRF--RRVPADNAGPRRQLAKG 125
Query: 151 -PARPRPQPRTRAPPPG--PRPTARTWGPPSP 179
P RP +P A P P P PP P
Sbjct: 126 VPLRPGAEPPAPASDPDLEPTPPGGLKSPPLP 157
>gi|239742343 PREDICTED: hypothetical protein XP_002342497 [Homo
sapiens]
Length = 208
Score = 36.2 bits (82), Expect = 0.027
Identities = 48/152 (31%), Positives = 58/152 (38%), Gaps = 27/152 (17%)
Query: 32 SLSRGRPVVPSRRGEWPPRRPSEVGSHAGALARRQLVHRVVAAVRVQEGHLVLVGRRAAA 91
S RG P PSR RR ++V AG L RR+L R A R E R
Sbjct: 29 SCGRG-PETPSRSQSPKLRRVAKV---AGQLRRRRLRQRDPPADREGE-------REVLR 77
Query: 92 GLRAHPLPPQAPPLAQSSQPEVVDARGSLAGACAVAEQHRLVGRVAQAQLAHAHLQLAQ- 150
G R P PPQ PP + + +G+ + R R A A QLA+
Sbjct: 78 GQRESPPPPQLPP----------ELLTNPSGSAIQSSPSRF--RRVPADNAGPRRQLAKG 125
Query: 151 -PARPRPQPRTRAPPPG--PRPTARTWGPPSP 179
P RP +P A P P P PP P
Sbjct: 126 VPLRPGAEPPAPASDPDLEPTPPGGLKSPPLP 157
>gi|118498339 EMI domain containing 2 [Homo sapiens]
Length = 439
Score = 36.2 bits (82), Expect = 0.027
Identities = 45/164 (27%), Positives = 63/164 (38%), Gaps = 26/164 (15%)
Query: 86 GRRAAAGLRAHPLPPQAPPLAQSSQPEVVDARGSLAGACAVAEQHRLVGRVAQAQLAHAH 145
G R G P PP P A + P +G+L ++ R+A A +
Sbjct: 239 GPRGLPGEMGRPGPPGPPGPAGNPGPSPNSPQGALYSLQPPTDKDNGDSRLASAIVDTVL 298
Query: 146 LQLAQPARPRPQPRTRAPPPGPRPTARTWGPP-SPGRQLAQLHRIRGPLQECTLTLGQAG 204
+ P P P PPGPR GPP +PG Q L RG T+G +G
Sbjct: 299 AGVPGPRGPPGPP----GPPGPRGPP---GPPGTPGSQ--GLAGERG-------TVGPSG 342
Query: 205 NPGVQGSR---------QAVQGDQRRSEAVAEKQALSTHPDGQH 239
PGV+G + VQ + + +AE+ + H G H
Sbjct: 343 EPGVKGEEGEKAATAEGEGVQQLREALKILAERVLILEHMIGIH 386
Score = 29.3 bits (64), Expect = 3.3
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 10/75 (13%)
Query: 6 ARVATLYLSTVIARVPGPRRRALRTRSLSRGRPVVPSRRGEWPPRRPSEVGSHAGALARR 65
+R+A+ + TV+A VPGPR G P P RG PP P GS A R
Sbjct: 287 SRLASAIVDTVLAGVPGPRG--------PPGPPGPPGPRG--PPGPPGTPGSQGLAGERG 336
Query: 66 QLVHRVVAAVRVQEG 80
+ V+ +EG
Sbjct: 337 TVGPSGEPGVKGEEG 351
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 36.2 bits (82), Expect = 0.027
Identities = 49/183 (26%), Positives = 63/183 (34%), Gaps = 10/183 (5%)
Query: 39 VVPSRRGEWPP---RRPSEVGSHAGALARRQLVHRVVAAVRVQEGHLVLVGRRAAAGLRA 95
V P RRG PP R P + A A A V R AAA A
Sbjct: 99 VQPPRRGATPPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATA 158
Query: 96 HPLPPQAPPLAQSSQPEVVDARGSLAGACAVAEQHRLVGRVAQAQLAHAHLQLAQPARP- 154
P P A P ++ + + A A R +A L P +P
Sbjct: 159 PPSPGPAQPGPRAQRAAPLAAPPPAPAAPPAVAPPAGPRRAPPPAVAAREPPLPPPPQPP 218
Query: 155 RPQPRTRAPPPGPRPTARTWGPPSPGRQLAQLHRIRGPLQECTLTLGQAGNPGVQGSRQA 214
P + + PPP P+P PP G A L+E LG +G G + +R
Sbjct: 219 APPQQQQPPPPQPQP------PPEGGAVRAGGAARPVSLREVVRYLGGSGGAGGRLTRGR 272
Query: 215 VQG 217
VQG
Sbjct: 273 VQG 275
>gi|169167792 PREDICTED: similar to hCG1745223 [Homo sapiens]
Length = 320
Score = 35.8 bits (81), Expect = 0.035
Identities = 42/176 (23%), Positives = 61/176 (34%), Gaps = 33/176 (18%)
Query: 18 ARVPGPRRRALRTRSLSRGRPVVPSRRGEW-----PPRRPSEVGSHAGALARRQLVHRVV 72
A++ G R L+T P P R+ W P P+ GS R++ +
Sbjct: 115 AKLKGVRMSTLQTAETKPRTPTCPRRQRRWLRTTPHPPPPTRQGS-------REMAGAFL 167
Query: 73 AAVRVQEGHLVLVGRRAAAGLRAHPLPPQAPPLAQSSQPEVVDARGSLAGACAVAEQHRL 132
A R R+ G + P P P + + +++ A L
Sbjct: 168 VAPRPPYS-------RSPGGPESAPTPASVLPELRRGKQDLLSADSGLPA---------- 210
Query: 133 VGRVAQAQLAHAHLQLAQPARPRPQP-RTRAPPPGPRPTARTWGPPSPGRQLAQLH 187
V Q ++A LQ AQP RP P +RA P + R P QL H
Sbjct: 211 ---VDQGEVAGPRLQPAQPLRPGAVPSASRARAPDTKAGTRARDPAPGASQLRAAH 263
>gi|88987622 PREDICTED: similar to hCG1745223 [Homo sapiens]
Length = 320
Score = 35.8 bits (81), Expect = 0.035
Identities = 42/176 (23%), Positives = 61/176 (34%), Gaps = 33/176 (18%)
Query: 18 ARVPGPRRRALRTRSLSRGRPVVPSRRGEW-----PPRRPSEVGSHAGALARRQLVHRVV 72
A++ G R L+T P P R+ W P P+ GS R++ +
Sbjct: 115 AKLKGVRMSTLQTAETKPRTPTCPRRQRRWLRTTPHPPPPTRQGS-------REMAGAFL 167
Query: 73 AAVRVQEGHLVLVGRRAAAGLRAHPLPPQAPPLAQSSQPEVVDARGSLAGACAVAEQHRL 132
A R R+ G + P P P + + +++ A L
Sbjct: 168 VAPRPPYS-------RSPGGPESAPTPASVLPELRRGKQDLLSADSGLPA---------- 210
Query: 133 VGRVAQAQLAHAHLQLAQPARPRPQP-RTRAPPPGPRPTARTWGPPSPGRQLAQLH 187
V Q ++A LQ AQP RP P +RA P + R P QL H
Sbjct: 211 ---VDQGEVAGPRLQPAQPLRPGAVPSASRARAPDTKAGTRARDPAPGASQLRAAH 263
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.132 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,928,817
Number of Sequences: 37866
Number of extensions: 710426
Number of successful extensions: 9178
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 590
Number of HSP's that attempted gapping in prelim test: 6950
Number of HSP's gapped (non-prelim): 2383
length of query: 244
length of database: 18,247,518
effective HSP length: 99
effective length of query: 145
effective length of database: 14,498,784
effective search space: 2102323680
effective search space used: 2102323680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.