Guide to the Human Genome
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Name: LOC100291094 Sequence: fasta or formatted (147aa) NCBI GI: 239751521
Description:

PREDICTED: hypothetical protein XP_002347881

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1          6           2
 C cysteine            2.0          3           1
 D aspartate           2.0          3           1
 E glutamate          10.9         16           2
 F phenylalanine       4.8          7           1
 G glycine             6.1          9           2
 H histidine           2.7          4           2
 I isoleucine          2.0          3           1
 K lysine              7.5         11           1
 L leucine            10.2         15           1
 M methionine          3.4          5           1
 N asparagine          2.7          4           1
 P proline             9.5         14           2
 Q glutamine           4.8          7           1
 R arginine            2.7          4           1
 S serine             10.2         15           1
 T threonine           4.8          7           1
 V valine              6.1          9           1
 W tryptophan          2.7          4           1
 Y tyrosine            0.7          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347881 
LOC100294047          1.000   PREDICTED: hypothetical protein 
LOC100289436          1.000   PREDICTED: hypothetical protein XP_002344185 
CHD8                  0.018   chromodomain helicase DNA binding protein 8 
SIK1                  0.014   SNF1-like kinase 
RSBN1L                0.014   round spermatid basic protein 1-like 
C2orf71               0.011   hypothetical protein LOC388939 
CAND2                 0.011   TBP-interacting protein isoform 1 
CAND2                 0.011   TBP-interacting protein isoform 2 
TAOK2                 0.011   TAO kinase 2 isoform 2 
ATF6B                 0.011   activating transcription factor 6 beta isoform b [H...
ATF6B                 0.011   activating transcription factor 6 beta isoform a [Ho...
C16orf5               0.011   cell death inducing protein 
ADAM10                0.011   ADAM metallopeptidase domain 10 
LOC100128064          0.011   PREDICTED: hypothetical protein 
LOC100128064          0.011   PREDICTED: hypothetical protein 
PNPLA1                0.011   patatin-like phospholipase domain containing 1 isof...
PNPLA1                0.011   patatin-like phospholipase domain containing 1 isof...
PNPLA1                0.011   patatin-like phospholipase domain containing 1 isof...
LOC100128064          0.007   PREDICTED: hypothetical protein 
ZNF469                0.007   zinc finger protein 469 
ATXN2                 0.007   ataxin 2 
COQ3                  0.007   hexaprenyldihydroxybenzoate methyltransferase [Homo...
ABCC10                0.007   ATP-binding cassette, sub-family C, member 10 
VPS13B                0.007   vacuolar protein sorting 13B isoform 5 
VPS13B                0.007   vacuolar protein sorting 13B isoform 1 
LOC644844             0.007   hypothetical protein LOC644844 
VAX2                  0.007   ventral anterior homeobox 2 
KIF18B                0.007   kinesin family member 18B 
STX18                 0.007   syntaxin 18 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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