Guide to the Human Genome
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Name: ATF6B Sequence: fasta or formatted (703aa) NCBI GI: 20631977
Description:

activating transcription factor 6 beta isoform a

Referenced in:

CREB / ATF Family

Other entries for this name:
alt prot [700aa] activating transcription factor 6 beta isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         42           2
 C cysteine            1.4         10           1
 D aspartate           4.6         32           2
 E glutamate           7.0         49           2
 F phenylalanine       2.7         19           2
 G glycine             5.3         37           2
 H histidine           1.6         11           1
 I isoleucine          3.1         22           1
 K lysine              4.0         28           3
 L leucine            11.0         77           3
 M methionine          2.1         15           2
 N asparagine          2.6         18           1
 P proline            12.1         85           3
 Q glutamine           6.3         44           2
 R arginine            6.4         45           3
 S serine             12.1         85           4
 T threonine           3.8         27           2
 V valine              6.7         47           2
 W tryptophan          0.6          4           1
 Y tyrosine            0.9          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   activating transcription factor 6 beta isoform a [Ho... 
ATF6B                 0.991   activating transcription factor 6 beta isoform b [H...
ATF6                  0.202   activating transcription factor 6 
CREB3L2               0.032   cAMP responsive element binding protein 3-like 2 [Ho...
CREB1                 0.028   cAMP responsive element binding protein 1 isoform A [...
CREB3L3               0.027   cAMP responsive element binding protein 3-like 3 [Ho...
CREB3L4               0.027   cAMP responsive element binding protein 3-like 4 [Ho...
CREB1                 0.026   cAMP responsive element binding protein 1 isoform B ...
CREB3L1               0.023   cAMP responsive element binding protein 3-like 1 [Ho...
CREM                  0.021   cAMP responsive element modulator isoform a 
CREM                  0.021   cAMP responsive element modulator isoform u 
CREM                  0.021   cAMP responsive element modulator isoform o 
CREM                  0.021   cAMP responsive element modulator isoform m 
FLJ22184              0.020   PREDICTED: hypothetical protein LOC80164 
FLJ22184              0.020   PREDICTED: hypothetical protein FLJ22184 
ATF7                  0.020   activating transcription factor 7 isoform 1 
CREB3                 0.020   cAMP responsive element binding protein 3 
ATF7                  0.019   activating transcription factor 7 isoform 2 
ATF1                  0.018   activating transcription factor 1 
CREM                  0.018   cAMP responsive element modulator isoform l 
CREM                  0.018   cAMP responsive element modulator isoform k 
CREM                  0.018   cAMP responsive element modulator isoform j 
CREM                  0.018   cAMP responsive element modulator isoform i 
CREM                  0.018   cAMP responsive element modulator isoform h 
CREM                  0.018   cAMP responsive element modulator isoform g 
CREM                  0.018   cAMP responsive element modulator isoform f 
CREM                  0.018   cAMP responsive element modulator isoform e 
CREM                  0.018   cAMP responsive element modulator isoform d 
CREM                  0.018   cAMP responsive element modulator isoform r 
CREM                  0.018   cAMP responsive element modulator isoform q 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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