Guide to the Human Genome
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Name: LOC100133405 Sequence: fasta or formatted (278aa) NCBI GI: 239751469
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         19           1
 C cysteine            5.4         15           1
 D aspartate           1.4          4           1
 E glutamate           1.8          5           1
 F phenylalanine       2.2          6           1
 G glycine            10.8         30           1
 H histidine           4.7         13           1
 I isoleucine          2.2          6           1
 K lysine              3.6         10           1
 L leucine            11.9         33           2
 M methionine          2.2          6           1
 N asparagine          1.1          3           1
 P proline            13.3         37           3
 Q glutamine           5.8         16           3
 R arginine            5.4         15           2
 S serine             10.8         30           2
 T threonine           4.0         11           1
 V valine              3.2          9           1
 W tryptophan          3.6         10           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
HES3                  0.026   hairy and enhancer of split 3 
WASF1                 0.021   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.021   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.021   Wiskott-Aldrich syndrome protein family member 1 [Ho...
WASF1                 0.021   Wiskott-Aldrich syndrome protein family member 1 [Hom...
HCN4                  0.017   hyperpolarization activated cyclic nucleotide-gated p...
DIAPH1                0.017   diaphanous 1 isoform 2 
DIAPH1                0.017   diaphanous 1 isoform 1 
SPEG                  0.017   SPEG complex locus 
SMARCC1               0.015   SWI/SNF-related matrix-associated actin-dependent r...
LOC100127987          0.014   PREDICTED: hypothetical protein LOC100127987 
LOC100127987          0.014   PREDICTED: hypothetical protein LOC100127987 
LOC100127987          0.014   PREDICTED: hypothetical protein LOC100127987 
TAF4                  0.014   TBP-associated factor 4 
VPS37B                0.012   vacuolar protein sorting 37B 
MYO15A                0.012   myosin XV 
TBKBP1                0.012   TBK1 binding protein 1 
WNK2                  0.012   WNK lysine deficient protein kinase 2 
ALPK3                 0.012   alpha-kinase 3 
RGL4                  0.012   ral guanine nucleotide dissociation stimulator-like ...
LOC100292287          0.012   PREDICTED: hypothetical protein 
LOC100289576          0.012   PREDICTED: hypothetical protein 
LOC100289576          0.012   PREDICTED: hypothetical protein XP_002343622 
TET3                  0.012   tet oncogene family member 3 
BBC3                  0.012   BCL2 binding component 3 isoform 1 
FAM134B               0.012   hypothetical protein LOC54463 isoform 1 
SNAP91                0.010   synaptosomal-associated protein, 91kDa homolog 
LOC100288699          0.010   PREDICTED: hypothetical protein XP_002343846 
LOC653550             0.010   PREDICTED: similar to TP53 target 3 isoform 3 [Homo...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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