Guide to the Human Genome
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Name: APBB2 Sequence: fasta or formatted (736aa) NCBI GI: 50083291
Description:

amyloid beta A4 precursor protein-binding, family B, member 2

Referenced in:

Additional Brain Proteins
WW Domain

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         55           2
 C cysteine            2.2         16           1
 D aspartate           6.7         49           4
 E glutamate           6.2         46           3
 F phenylalanine       2.0         15           1
 G glycine             4.9         36           1
 H histidine           2.3         17           2
 I isoleucine          3.9         29           2
 K lysine              5.8         43           2
 L leucine             8.0         59           3
 M methionine          2.2         16           1
 N asparagine          5.8         43           2
 P proline             7.6         56           5
 Q glutamine           4.2         31           2
 R arginine            5.0         37           2
 S serine              9.4         69           3
 T threonine           6.5         48           2
 V valine              6.8         50           1
 W tryptophan          1.4         10           1
 Y tyrosine            1.5         11           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   amyloid beta A4 precursor protein-binding, family B,... 
APBB1                 0.373   amyloid beta A4 precursor protein-binding, family B,...
APBB1                 0.370   amyloid beta A4 precursor protein-binding, family B, ...
APBB3                 0.241   amyloid beta precursor protein-binding, family B, me...
APBB3                 0.237   amyloid beta precursor protein-binding, family B, me...
APBB3                 0.236   amyloid beta precursor protein-binding, family B, me...
APBB3                 0.235   amyloid beta precursor protein-binding, family B, me...
NEDD4                 0.014   neural precursor cell expressed, developmentally do...
WWP1                  0.013   WW domain containing E3 ubiquitin protein ligase 1 [...
WWP2                  0.012   WW domain containing E3 ubiquitin protein ligase 2 i...
NUMB                  0.012   numb homolog isoform 4 
NUMB                  0.012   numb homolog isoform 3 
GULP1                 0.010   GULP, engulfment adaptor PTB domain containing 1 [Hom...
MAPK8IP1              0.010   mitogen-activated protein kinase 8 interacting protei...
NEDD4                 0.010   neural precursor cell expressed, developmentally do...
GAS7                  0.010   growth arrest-specific 7 isoform d 
GAS7                  0.010   growth arrest-specific 7 isoform c 
GAS7                  0.010   growth arrest-specific 7 isoform b 
ITCH                  0.010   itchy homolog E3 ubiquitin protein ligase 
NEDD4L                0.010   neural precursor cell expressed, developmentally do...
NEDD4L                0.010   neural precursor cell expressed, developmentally dow...
NEDD4L                0.010   neural precursor cell expressed, developmentally do...
NEDD4L                0.010   neural precursor cell expressed, developmentally do...
NEDD4L                0.010   neural precursor cell expressed, developmentally do...
NEDD4L                0.010   neural precursor cell expressed, developmentally do...
NEDD4L                0.010   neural precursor cell expressed, developmentally do...
NEDD4L                0.010   neural precursor cell expressed, developmentally do...
NEDD4L                0.010   neural precursor cell expressed, developmentally do...
LOC284297             0.009   hypothetical protein LOC284297 
SMURF2                0.008   SMAD specific E3 ubiquitin protein ligase 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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