Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 239751413

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239751413 PREDICTED: hypothetical protein XP_002347827 [Homo
sapiens]
         (155 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239756910 PREDICTED: hypothetical protein [Homo sapiens]           330   4e-91
gi|239751413 PREDICTED: hypothetical protein XP_002347827 [Homo ...   330   4e-91
gi|239745923 PREDICTED: hypothetical protein XP_002343577 [Homo ...   330   4e-91
gi|4504615 insulin-like growth factor binding protein 1 precurso...    29   1.4  
gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens]    29   1.4  
gi|239753941 PREDICTED: hypothetical protein [Homo sapiens]            29   1.9  
gi|239748481 PREDICTED: hypothetical protein [Homo sapiens]            29   1.9  
gi|239742445 PREDICTED: hypothetical protein XP_002342517 [Homo ...    29   1.9  
gi|42794771 thioredoxin domain containing 5 isoform 1 precursor ...    28   2.4  
gi|253735778 Rho/Rac guanine nucleotide exchange factor 2 isofor...    28   4.1  
gi|253735775 Rho/Rac guanine nucleotide exchange factor 2 isofor...    28   4.1  
gi|15011974 Rho/Rac guanine nucleotide exchange factor 2 isoofor...    28   4.1  
gi|169184025 PREDICTED: hypothetical protein [Homo sapiens]            28   4.1  
gi|239752515 PREDICTED: similar to double homeobox, 4 [Homo sapi...    28   4.1  
gi|169179740 PREDICTED: hypothetical protein [Homo sapiens]            28   4.1  
gi|169180137 PREDICTED: hypothetical protein [Homo sapiens]            28   4.1  
gi|4758392 forkhead box D1 [Homo sapiens]                              28   4.1  
gi|239744548 PREDICTED: hypothetical protein XP_002343194 [Homo ...    27   5.4  
gi|21703710 scotin [Homo sapiens]                                      27   5.4  
gi|87116683 proline/serine-rich coiled-coil 2 [Homo sapiens]           27   5.4  
gi|134031945 SCO-spondin [Homo sapiens]                                27   5.4  
gi|164565408 common-site lymphoma/leukemia guanine nucleotide ex...    27   5.4  
gi|239757412 PREDICTED: hypothetical protein XP_002345272 [Homo ...    27   7.0  
gi|239756405 PREDICTED: hypothetical protein [Homo sapiens]            27   7.0  
gi|239751877 PREDICTED: hypothetical protein XP_002348035 [Homo ...    27   7.0  
gi|239750935 PREDICTED: hypothetical protein XP_002347608 [Homo ...    27   7.0  
gi|239745329 PREDICTED: hypothetical protein XP_002343427 [Homo ...    27   7.0  
gi|111494239 galectin 9 like [Homo sapiens]                            27   7.0  
gi|253735697 5-hydroxytryptamine (serotonin) receptor 3A isoform...    27   9.2  
gi|17196626 patatin-like phospholipase domain containing 3 [Homo...    27   9.2  

>gi|239756910 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 155

 Score =  330 bits (845), Expect = 4e-91
 Identities = 155/155 (100%), Positives = 155/155 (100%)

Query: 1   MVSLHPSCDRSPSRPHNRESGSIETCLKRGWSQQDGHKWERGRGVGPHQPLPVPEAAAWR 60
           MVSLHPSCDRSPSRPHNRESGSIETCLKRGWSQQDGHKWERGRGVGPHQPLPVPEAAAWR
Sbjct: 1   MVSLHPSCDRSPSRPHNRESGSIETCLKRGWSQQDGHKWERGRGVGPHQPLPVPEAAAWR 60

Query: 61  VLLLLLLHAGGSRWSQAPLGQALPCPAEAGWLHFPISSPMGCRGIYDAQQVALSRSFLPV 120
           VLLLLLLHAGGSRWSQAPLGQALPCPAEAGWLHFPISSPMGCRGIYDAQQVALSRSFLPV
Sbjct: 61  VLLLLLLHAGGSRWSQAPLGQALPCPAEAGWLHFPISSPMGCRGIYDAQQVALSRSFLPV 120

Query: 121 SVAQKQVKGRGRWGDVGATQSPVAVRELGTLRGAC 155
           SVAQKQVKGRGRWGDVGATQSPVAVRELGTLRGAC
Sbjct: 121 SVAQKQVKGRGRWGDVGATQSPVAVRELGTLRGAC 155


>gi|239751413 PREDICTED: hypothetical protein XP_002347827 [Homo
           sapiens]
          Length = 155

 Score =  330 bits (845), Expect = 4e-91
 Identities = 155/155 (100%), Positives = 155/155 (100%)

Query: 1   MVSLHPSCDRSPSRPHNRESGSIETCLKRGWSQQDGHKWERGRGVGPHQPLPVPEAAAWR 60
           MVSLHPSCDRSPSRPHNRESGSIETCLKRGWSQQDGHKWERGRGVGPHQPLPVPEAAAWR
Sbjct: 1   MVSLHPSCDRSPSRPHNRESGSIETCLKRGWSQQDGHKWERGRGVGPHQPLPVPEAAAWR 60

Query: 61  VLLLLLLHAGGSRWSQAPLGQALPCPAEAGWLHFPISSPMGCRGIYDAQQVALSRSFLPV 120
           VLLLLLLHAGGSRWSQAPLGQALPCPAEAGWLHFPISSPMGCRGIYDAQQVALSRSFLPV
Sbjct: 61  VLLLLLLHAGGSRWSQAPLGQALPCPAEAGWLHFPISSPMGCRGIYDAQQVALSRSFLPV 120

Query: 121 SVAQKQVKGRGRWGDVGATQSPVAVRELGTLRGAC 155
           SVAQKQVKGRGRWGDVGATQSPVAVRELGTLRGAC
Sbjct: 121 SVAQKQVKGRGRWGDVGATQSPVAVRELGTLRGAC 155


>gi|239745923 PREDICTED: hypothetical protein XP_002343577 [Homo
           sapiens]
          Length = 155

 Score =  330 bits (845), Expect = 4e-91
 Identities = 155/155 (100%), Positives = 155/155 (100%)

Query: 1   MVSLHPSCDRSPSRPHNRESGSIETCLKRGWSQQDGHKWERGRGVGPHQPLPVPEAAAWR 60
           MVSLHPSCDRSPSRPHNRESGSIETCLKRGWSQQDGHKWERGRGVGPHQPLPVPEAAAWR
Sbjct: 1   MVSLHPSCDRSPSRPHNRESGSIETCLKRGWSQQDGHKWERGRGVGPHQPLPVPEAAAWR 60

Query: 61  VLLLLLLHAGGSRWSQAPLGQALPCPAEAGWLHFPISSPMGCRGIYDAQQVALSRSFLPV 120
           VLLLLLLHAGGSRWSQAPLGQALPCPAEAGWLHFPISSPMGCRGIYDAQQVALSRSFLPV
Sbjct: 61  VLLLLLLHAGGSRWSQAPLGQALPCPAEAGWLHFPISSPMGCRGIYDAQQVALSRSFLPV 120

Query: 121 SVAQKQVKGRGRWGDVGATQSPVAVRELGTLRGAC 155
           SVAQKQVKGRGRWGDVGATQSPVAVRELGTLRGAC
Sbjct: 121 SVAQKQVKGRGRWGDVGATQSPVAVRELGTLRGAC 155


>gi|4504615 insulin-like growth factor binding protein 1 precursor
          [Homo sapiens]
          Length = 259

 Score = 29.3 bits (64), Expect = 1.4
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 9/49 (18%)

Query: 53 VPEAAAWRVLLLLLLHAG---GSRWSQAPLGQALPCPAEAGWLHFPISS 98
          VP A  W VLLLL +  G   G+ W      Q  PC AE   L  P+S+
Sbjct: 4  VPVARVWLVLLLLTVQVGVTAGAPW------QCAPCSAEKLALCPPVSA 46


>gi|71274144 AT hook, DNA binding motif, containing 1 [Homo sapiens]
          Length = 1603

 Score = 29.3 bits (64), Expect = 1.4
 Identities = 26/73 (35%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 66  LLHAGGSRWS-QAPLGQALPCPAEAGWLHFPISSPMGCRGIYDAQQVALSRSFLPVSVAQ 124
           LL   G R   Q PLG    CP  A  L   + SP G  G     + AL R+  P  + +
Sbjct: 340 LLDVPGRRLEPQQPLGH---CPL-AEPLRLDLCSPHGPPGPEGHPKYALRRTDRPKILCR 395

Query: 125 KQVKGRGRWGDVG 137
           ++  GRGR  D G
Sbjct: 396 RRKAGRGRKADAG 408


>gi|239753941 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 225

 Score = 28.9 bits (63), Expect = 1.9
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)

Query: 25  TCL--KRGWSQQDGHKWERGRGVGPHQPLPVPEAAAWRVL 62
           +CL  K GW  + G +W R  G+ P Q L + EA   R+L
Sbjct: 171 SCLLKKEGWEWK-GAEWGRSAGISPAQILKIDEARKRRLL 209


>gi|239748481 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 199

 Score = 28.9 bits (63), Expect = 1.9
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)

Query: 25  TCL--KRGWSQQDGHKWERGRGVGPHQPLPVPEAAAWRVL 62
           +CL  K GW  + G +W R  G+ P Q L + EA   R+L
Sbjct: 145 SCLLKKEGWEWK-GAEWGRSAGISPAQILKIDEARKRRLL 183


>gi|239742445 PREDICTED: hypothetical protein XP_002342517 [Homo
           sapiens]
          Length = 199

 Score = 28.9 bits (63), Expect = 1.9
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 3/40 (7%)

Query: 25  TCL--KRGWSQQDGHKWERGRGVGPHQPLPVPEAAAWRVL 62
           +CL  K GW  + G +W R  G+ P Q L + EA   R+L
Sbjct: 145 SCLLKKEGWEWK-GAEWGRSAGISPAQILKIDEARKRRLL 183


>gi|42794771 thioredoxin domain containing 5 isoform 1 precursor
          [Homo sapiens]
          Length = 432

 Score = 28.5 bits (62), Expect = 2.4
 Identities = 14/25 (56%), Positives = 15/25 (60%)

Query: 50 PLPVPEAAAWRVLLLLLLHAGGSRW 74
          PL    AA   +LLLLL H GG RW
Sbjct: 10 PLLARPAALTALLLLLLGHGGGGRW 34


>gi|253735778 Rho/Rac guanine nucleotide exchange factor 2 isoform 2
           [Homo sapiens]
          Length = 985

 Score = 27.7 bits (60), Expect = 4.1
 Identities = 15/33 (45%), Positives = 17/33 (51%)

Query: 64  LLLLHAGGSRWSQAPLGQALPCPAEAGWLHFPI 96
           LL   A  +R   A LGQ  P PAEA W   P+
Sbjct: 847 LLEREAEEARRQLAALGQTEPLPAEAPWARRPV 879


>gi|253735775 Rho/Rac guanine nucleotide exchange factor 2 isoform 1
           [Homo sapiens]
          Length = 986

 Score = 27.7 bits (60), Expect = 4.1
 Identities = 15/33 (45%), Positives = 17/33 (51%)

Query: 64  LLLLHAGGSRWSQAPLGQALPCPAEAGWLHFPI 96
           LL   A  +R   A LGQ  P PAEA W   P+
Sbjct: 848 LLEREAEEARRQLAALGQTEPLPAEAPWARRPV 880


>gi|15011974 Rho/Rac guanine nucleotide exchange factor 2 isooform 3
           [Homo sapiens]
          Length = 958

 Score = 27.7 bits (60), Expect = 4.1
 Identities = 15/33 (45%), Positives = 17/33 (51%)

Query: 64  LLLLHAGGSRWSQAPLGQALPCPAEAGWLHFPI 96
           LL   A  +R   A LGQ  P PAEA W   P+
Sbjct: 820 LLEREAEEARRQLAALGQTEPLPAEAPWARRPV 852


>gi|169184025 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 230

 Score = 27.7 bits (60), Expect = 4.1
 Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 30/106 (28%)

Query: 70  GGSRWSQAPLG--------------QALPCPAEAGWLHFPISSPMGCRGIYDAQQVALSR 115
           GG+RWS  P G              + +P P+       P++ P+ C  +      A   
Sbjct: 37  GGARWSSKPRGPGGAAAGSESQSPPRGVPRPSRR-----PLAHPLPCESV---SPCAWPA 88

Query: 116 SFLPVSVAQKQVKGR--------GRWGDVGATQSPVAVRELGTLRG 153
            F P  + Q+  KGR          +G  G   + + +R+ G  RG
Sbjct: 89  CFGPSGLPQRWPKGRLPSAEQVTNHFGGHGIDTAALEIRDKGPERG 134


>gi|239752515 PREDICTED: similar to double homeobox, 4 [Homo
           sapiens]
          Length = 479

 Score = 27.7 bits (60), Expect = 4.1
 Identities = 12/27 (44%), Positives = 14/27 (51%)

Query: 33  QQDGHKWERGRGVGPHQPLPVPEAAAW 59
           Q  G  WE   G  P + L  PEA+AW
Sbjct: 374 QLTGAAWEPQAGAAPPRQLAPPEASAW 400


>gi|169179740 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 230

 Score = 27.7 bits (60), Expect = 4.1
 Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 30/106 (28%)

Query: 70  GGSRWSQAPLG--------------QALPCPAEAGWLHFPISSPMGCRGIYDAQQVALSR 115
           GG+RWS  P G              + +P P+       P++ P+ C  +      A   
Sbjct: 37  GGARWSSKPRGPGGAAAGSESQSPPRGVPRPSRR-----PLAHPLPCESV---SPCAWPA 88

Query: 116 SFLPVSVAQKQVKGR--------GRWGDVGATQSPVAVRELGTLRG 153
            F P  + Q+  KGR          +G  G   + + +R+ G  RG
Sbjct: 89  CFGPSGLPQRWPKGRLPSAEQVTNHFGGHGIDTAALEIRDKGPERG 134


>gi|169180137 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 230

 Score = 27.7 bits (60), Expect = 4.1
 Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 30/106 (28%)

Query: 70  GGSRWSQAPLG--------------QALPCPAEAGWLHFPISSPMGCRGIYDAQQVALSR 115
           GG+RWS  P G              + +P P+       P++ P+ C  +      A   
Sbjct: 37  GGARWSSKPRGPGGAAAGSESQSPPRGVPRPSRR-----PLAHPLPCESV---SPCAWPA 88

Query: 116 SFLPVSVAQKQVKGR--------GRWGDVGATQSPVAVRELGTLRG 153
            F P  + Q+  KGR          +G  G   + + +R+ G  RG
Sbjct: 89  CFGPSGLPQRWPKGRLPSAEQVTNHFGGHGIDTAALEIRDKGPERG 134


>gi|4758392 forkhead box D1 [Homo sapiens]
          Length = 465

 Score = 27.7 bits (60), Expect = 4.1
 Identities = 30/101 (29%), Positives = 35/101 (34%), Gaps = 1/101 (0%)

Query: 2   VSLHPSCDRSPSRPHNRESGSIETCLKRGWSQQDGHKWERGRGVGPHQPLPVPEAAAWRV 61
           +SL+    + P  P N   G+  T         D   + R R     QPL  P AAA   
Sbjct: 177 LSLNDCFVKIPREPGNPGKGNYWTLDPESADMFDNGSFLRRRKRFKRQPLLPPNAAAAES 236

Query: 62  LLLLLLHAGGSRWSQAPLGQALPCPAEAGWLHFPISSPMGC 102
           LLL    A G     A      P PA     H     P GC
Sbjct: 237 LLLRGAGAAGGAGDPAAAAALFP-PAPPPPPHAYGYGPYGC 276


>gi|239744548 PREDICTED: hypothetical protein XP_002343194 [Homo
          sapiens]
          Length = 192

 Score = 27.3 bits (59), Expect = 5.4
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 3  SLHPSCDRSPSRPHNRESGSIETCLKRGWSQQDGHKWERGRGVGPHQPLPVPEAAAWRVL 62
          ++HP+ DR   R +  E   +  C+K  W        E    +G H+  P   A    VL
Sbjct: 14 AIHPTGDRR--RANTIEKLGVGCCVK--WDATGSKAQEDLGSLGLHEKTPQCAAVRLHVL 69

Query: 63 LLLLL 67
          LL+LL
Sbjct: 70 LLILL 74


>gi|21703710 scotin [Homo sapiens]
          Length = 240

 Score = 27.3 bits (59), Expect = 5.4
 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 8/60 (13%)

Query: 50  PLPVPEAAAWRVLLLLLLHAGGSRWSQAPLGQALPCPAEAGWLHFPISSPMGCRGIYDAQ 109
           P+P P      +LLLLL    G+R      G+   C A  G   FP S P  C G  D Q
Sbjct: 4   PVPAPRILLPLLLLLLLTPPPGAR------GEV--CMASRGLSLFPESCPDFCCGTCDDQ 55


>gi|87116683 proline/serine-rich coiled-coil 2 [Homo sapiens]
          Length = 1989

 Score = 27.3 bits (59), Expect = 5.4
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 6   PSCDRSPSRPH----NRESGSIETCLKRGWSQQDGHKWERGRGVG 46
           PS   S S P      R   +++    RG   + G +W RGRGVG
Sbjct: 120 PSSSLSESSPRPSFWERSHLALDRFRFRGRPYRGGSRWSRGRGVG 164


>gi|134031945 SCO-spondin [Homo sapiens]
          Length = 5147

 Score = 27.3 bits (59), Expect = 5.4
 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 17  NRESGSIETCLKRGWSQQ--DGHKWERGRGVGPHQPLPVPEAAAWRVLLLLLLHAGGSRW 74
           N  +GS+E C  R W Q   DG           H    +P +A+   LL  L  A G  W
Sbjct: 130 NASAGSLEECCARPWGQSWWDGSSQACRSCSSRH----LPGSASSPALLQPLAGAVGQLW 185

Query: 75  SQ 76
           SQ
Sbjct: 186 SQ 187


>gi|164565408 common-site lymphoma/leukemia guanine nucleotide
           exchange factor [Homo sapiens]
          Length = 1386

 Score = 27.3 bits (59), Expect = 5.4
 Identities = 25/67 (37%), Positives = 30/67 (44%), Gaps = 8/67 (11%)

Query: 32  SQQDGHKWERGRGVG--PHQPLPVPEAAAWRVLLLLLLHAGGSRWSQAPLGQALPCPAEA 89
           S+Q G    +G  V   P Q LP    +A      LL   GGSR  QAP   A P P + 
Sbjct: 906 SKQGGSPDGQGLHVSNLPKQDLPGIHVSA----ATLLPEQGGSRHVQAP--AATPLPKQE 959

Query: 90  GWLHFPI 96
           G LH  +
Sbjct: 960 GPLHLQV 966


>gi|239757412 PREDICTED: hypothetical protein XP_002345272 [Homo
          sapiens]
          Length = 564

 Score = 26.9 bits (58), Expect = 7.0
 Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 5/47 (10%)

Query: 3  SLHPSCDR----SPSRPHNRESGSIETCLKRGWS-QQDGHKWERGRG 44
          SLHP   R    S  RP  +E G   TC  R WS  +     ERG G
Sbjct: 8  SLHPGPQRPLPHSRPRPAPQEQGPASTCTGRLWSFDKRRSNGERGPG 54


>gi|239756405 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 144

 Score = 26.9 bits (58), Expect = 7.0
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 96  ISSPMGCRGIYDAQQVALSRSFLPVS--VAQKQVKGRGRWGDVGATQSPVAVRELGTLRG 153
           ++  M  R +Y A+    + SF   S  +    +K   R  D+G    P A R   T RG
Sbjct: 14  VNRTMALRQLYSAESTCSALSFSTCSWKIRMWSIKATTRSADMGEACRPAAARSGATWRG 73


>gi|239751877 PREDICTED: hypothetical protein XP_002348035 [Homo
          sapiens]
          Length = 944

 Score = 26.9 bits (58), Expect = 7.0
 Identities = 19/47 (40%), Positives = 21/47 (44%), Gaps = 5/47 (10%)

Query: 3  SLHPSCDR----SPSRPHNRESGSIETCLKRGWS-QQDGHKWERGRG 44
          SLHP   R    S  RP  +E G   TC  R WS  +     ERG G
Sbjct: 8  SLHPGPQRPLPHSRPRPAPQEQGPASTCTGRLWSFDKRRSNGERGPG 54


>gi|239750935 PREDICTED: hypothetical protein XP_002347608 [Homo
           sapiens]
          Length = 144

 Score = 26.9 bits (58), Expect = 7.0
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 96  ISSPMGCRGIYDAQQVALSRSFLPVS--VAQKQVKGRGRWGDVGATQSPVAVRELGTLRG 153
           ++  M  R +Y A+    + SF   S  +    +K   R  D+G    P A R   T RG
Sbjct: 14  VNRTMALRQLYSAESTCSALSFSTCSWKIRMWSIKATTRSADMGEACRPAAARSGATWRG 73


>gi|239745329 PREDICTED: hypothetical protein XP_002343427 [Homo
           sapiens]
          Length = 144

 Score = 26.9 bits (58), Expect = 7.0
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 96  ISSPMGCRGIYDAQQVALSRSFLPVS--VAQKQVKGRGRWGDVGATQSPVAVRELGTLRG 153
           ++  M  R +Y A+    + SF   S  +    +K   R  D+G    P A R   T RG
Sbjct: 14  VNRTMALRQLYSAESTCSALSFSTCSWKIRMWSIKATTRSADMGEACRPAAARSGATWRG 73


>gi|111494239 galectin 9 like [Homo sapiens]
          Length = 356

 Score = 26.9 bits (58), Expect = 7.0
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 3/79 (3%)

Query: 41  RGRGVGPHQPLPVPEAAAWRVLLLLLLHAGGSRWSQAPLGQALPCPAEAGWLHFPISSPM 100
           RGR   P    P   A   + ++  +  A G  +SQ P    +  P  A  + F  + P 
Sbjct: 175 RGRRQKPPSVRPANPAPITQTVIHTVQSASGQMFSQTPAIPPMMYPHPAYPMPFITTIP- 233

Query: 101 GCRGIYDAQQVALSRSFLP 119
              G+Y ++ + LS + LP
Sbjct: 234 --GGLYPSKSIILSGTVLP 250


>gi|253735697 5-hydroxytryptamine (serotonin) receptor 3A isoform a
           precursor [Homo sapiens]
          Length = 516

 Score = 26.6 bits (57), Expect = 9.2
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 4/39 (10%)

Query: 86  PAEAGWLHFPISSPMGCRGIYDAQQVALSRSFLPVSVAQ 124
           PA +  LH  ++S +GC G+Y    +AL    L +S+A+
Sbjct: 326 PAPSHLLHVSLASALGCTGVYFVVCMAL----LVISLAE 360


>gi|17196626 patatin-like phospholipase domain containing 3 [Homo
           sapiens]
          Length = 481

 Score = 26.6 bits (57), Expect = 9.2
 Identities = 25/65 (38%), Positives = 31/65 (47%), Gaps = 8/65 (12%)

Query: 60  RVLLLLLLHAGGSRWSQAPLG--QALPCPAEAGWLHFPISSPMGCRGIYDAQQVALSRSF 117
           RVL+ LL     SR SQ P+   QA PC  E  W  +   SP GC    + +  A  RS 
Sbjct: 396 RVLMCLL---PASR-SQMPVSSQQASPCTPEQDWPCWTPCSPKGCPA--ETKAEATPRSI 449

Query: 118 LPVSV 122
           L  S+
Sbjct: 450 LRSSL 454


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.135    0.452 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,297,759
Number of Sequences: 37866
Number of extensions: 382527
Number of successful extensions: 918
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 908
Number of HSP's gapped (non-prelim): 36
length of query: 155
length of database: 18,247,518
effective HSP length: 93
effective length of query: 62
effective length of database: 14,725,980
effective search space: 913010760
effective search space used: 913010760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press