Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100290350 Sequence: fasta or formatted (144aa) NCBI GI: 239750935
Description:

PREDICTED: hypothetical protein XP_002347608

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.8         17           3
 C cysteine            4.2          6           1
 D aspartate           1.4          2           1
 E glutamate           2.8          4           1
 F phenylalanine       2.8          4           1
 G glycine             6.2          9           1
 H histidine           2.1          3           1
 I isoleucine          4.9          7           1
 K lysine              5.6          8           2
 L leucine             6.2          9           2
 M methionine          6.9         10           2
 N asparagine          2.1          3           1
 P proline             2.1          3           1
 Q glutamine           2.1          3           1
 R arginine            9.7         14           2
 S serine             13.2         19           2
 T threonine           7.6         11           2
 V valine              2.8          4           1
 W tryptophan          4.2          6           1
 Y tyrosine            1.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002347608 
LOC100292325          1.000   PREDICTED: hypothetical protein 
LOC100288183          1.000   PREDICTED: hypothetical protein XP_002343427 
LOC100129010          0.526   PREDICTED: hypothetical protein 
LOC100129010          0.526   PREDICTED: hypothetical protein 
LOC100129010          0.526   PREDICTED: hypothetical protein 
LOC100291887          0.430   PREDICTED: hypothetical protein XP_002345195 
LOC100287051          0.430   PREDICTED: hypothetical protein 
LOC100287051          0.430   PREDICTED: hypothetical protein XP_002343673 
WDR86                 0.018   WD repeat domain 86 
LOC100293514          0.007   PREDICTED: hypothetical protein 
LOC100290387          0.007   PREDICTED: hypothetical protein XP_002347827 
LOC100289432          0.007   PREDICTED: hypothetical protein XP_002343577 
MSR1                  0.007   macrophage scavenger receptor 1 isoform type 3 [Homo...
XAGE1C                0.007   X antigen family, member 1C isoform 1 
XAGE1D                0.007   X antigen family, member 1D isoform 1c 
XAGE1D                0.007   X antigen family, member 1D isoform 1a 
XAGE1C                0.007   X antigen family, member 1C isoform 2 
XAGE1B                0.007   X antigen family, member 1B isoform 1 
XAGE1B                0.007   X antigen family, member 1B isoform 2 
XAGE1A                0.007   X antigen family, member 1 isoform 2 
XAGE1A                0.007   X antigen family, member 1 isoform 1 
FAM53C                0.007   hypothetical protein LOC51307 
FAM53C                0.007   hypothetical protein LOC51307 
XAGE1E                0.007   X antigen family member 1E isoform 2 
XAGE1E                0.007   X antigen family member 1E isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press