Search of human proteins with 239751314

Search of human proteins with 239751314

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239751314 PREDICTED: hypothetical protein XP_002347802 [Homo
sapiens]
         (179 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239751314 PREDICTED: hypothetical protein XP_002347802 [Homo ...   390   e-109
gi|239745813 PREDICTED: hypothetical protein XP_002343595 [Homo ...   291   3e-79
gi|239756790 PREDICTED: similar to hCG1991532 [Homo sapiens]          286   7e-78
gi|226693407 TBC1 domain family, member 3H [Homo sapiens]             154   4e-38
gi|14149985 TBC1 domain family, member 3F [Homo sapiens]              154   4e-38
gi|183583565 TBC1 domain family, member 3 [Homo sapiens]              154   4e-38
gi|183583567 TBC1 domain family, member 3E [Homo sapiens]             154   4e-38
gi|149999613 TBC1 domain family, member 3B [Homo sapiens]             154   4e-38
gi|183583563 TBC1 domain family, member 3D [Homo sapiens]             154   4e-38
gi|90577185 TBC1 domain family member 3C [Homo sapiens]               154   4e-38
gi|157502205 TBC1 domain family, member 3G [Homo sapiens]             154   4e-38
gi|239756926 PREDICTED: similar to TBC1 domain family, member 3 ...   149   1e-36
gi|109638751 ubiquitin specific protease 6 [Homo sapiens]             149   2e-36
gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Ho...    39   0.002
gi|239753000 PREDICTED: hypothetical protein [Homo sapiens]            37   0.009
gi|134031945 SCO-spondin [Homo sapiens]                                34   0.059
gi|41281612 zinc finger protein 828 [Homo sapiens]                     34   0.077
gi|241982802 HMG box domain containing 3 [Homo sapiens]                33   0.13 
gi|89040432 PREDICTED: hypothetical protein [Homo sapiens]             33   0.13 
gi|118918421 ets variant gene 4 (E1A enhancer binding protein, E...    32   0.22 
gi|24307883 ets variant gene 4 (E1A enhancer binding protein, E1...    32   0.22 
gi|169210192 PREDICTED: hypothetical protein [Homo sapiens]            32   0.22 
gi|113425957 PREDICTED: hypothetical protein [Homo sapiens]            32   0.22 
gi|30039694 zinc finger protein 598 [Homo sapiens]                     32   0.22 
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ...    32   0.29 
gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]            32   0.29 
gi|209180481 Cas-Br-M (murine) ecotropic retroviral transforming...    32   0.29 
gi|149944590 SRR1 domain containing [Homo sapiens]                     32   0.29 
gi|188497689 chromatin licensing and DNA replication factor 1 [H...    32   0.38 
gi|91208420 bassoon protein [Homo sapiens]                             32   0.38 

>gi|239751314 PREDICTED: hypothetical protein XP_002347802 [Homo
           sapiens]
          Length = 179

 Score =  390 bits (1001), Expect = e-109
 Identities = 179/179 (100%), Positives = 179/179 (100%)

Query: 1   MARTAFKVQRSKSTCAQWGLGSSGVRPRLAQGQLPHTVPMFLCSSPEEAKPKQGSSAPRP 60
           MARTAFKVQRSKSTCAQWGLGSSGVRPRLAQGQLPHTVPMFLCSSPEEAKPKQGSSAPRP
Sbjct: 1   MARTAFKVQRSKSTCAQWGLGSSGVRPRLAQGQLPHTVPMFLCSSPEEAKPKQGSSAPRP 60

Query: 61  ELASPCGRKTLCKGSRQAPPGPQAHFQQCIWSASPPWVPLPFTPCPVLVGLSQGVPRLAP 120
           ELASPCGRKTLCKGSRQAPPGPQAHFQQCIWSASPPWVPLPFTPCPVLVGLSQGVPRLAP
Sbjct: 61  ELASPCGRKTLCKGSRQAPPGPQAHFQQCIWSASPPWVPLPFTPCPVLVGLSQGVPRLAP 120

Query: 121 AQGGPRVSWRYLQWNSLPQLPMDSDVVSPWFPHYDFEQGCWARVPSKCVLDSPGTMGQT 179
           AQGGPRVSWRYLQWNSLPQLPMDSDVVSPWFPHYDFEQGCWARVPSKCVLDSPGTMGQT
Sbjct: 121 AQGGPRVSWRYLQWNSLPQLPMDSDVVSPWFPHYDFEQGCWARVPSKCVLDSPGTMGQT 179


>gi|239745813 PREDICTED: hypothetical protein XP_002343595 [Homo
           sapiens]
          Length = 279

 Score =  291 bits (744), Expect = 3e-79
 Identities = 130/131 (99%), Positives = 131/131 (100%)

Query: 49  AKPKQGSSAPRPELASPCGRKTLCKGSRQAPPGPQAHFQQCIWSASPPWVPLPFTPCPVL 108
           +KPKQGSSAPRPELASPCGRKTLCKGSRQAPPGPQAHFQQCIWSASPPWVPLPFTPCPVL
Sbjct: 149 SKPKQGSSAPRPELASPCGRKTLCKGSRQAPPGPQAHFQQCIWSASPPWVPLPFTPCPVL 208

Query: 109 VGLSQGVPRLAPAQGGPRVSWRYLQWNSLPQLPMDSDVVSPWFPHYDFEQGCWARVPSKC 168
           VGLSQGVPRLAPAQGGPRVSWRYLQWNSLPQLPMDSDVVSPWFPHYDFEQGCWARVPSKC
Sbjct: 209 VGLSQGVPRLAPAQGGPRVSWRYLQWNSLPQLPMDSDVVSPWFPHYDFEQGCWARVPSKC 268

Query: 169 VLDSPGTMGQT 179
           VLDSPGTMGQT
Sbjct: 269 VLDSPGTMGQT 279


>gi|239756790 PREDICTED: similar to hCG1991532 [Homo sapiens]
          Length = 167

 Score =  286 bits (732), Expect = 7e-78
 Identities = 129/131 (98%), Positives = 130/131 (99%)

Query: 49  AKPKQGSSAPRPELASPCGRKTLCKGSRQAPPGPQAHFQQCIWSASPPWVPLPFTPCPVL 108
           +KPKQGSSAPRPELASPCGRKTLCKGSRQAPPGPQAHFQQ IWSASPPWVPLPFTPCPVL
Sbjct: 37  SKPKQGSSAPRPELASPCGRKTLCKGSRQAPPGPQAHFQQRIWSASPPWVPLPFTPCPVL 96

Query: 109 VGLSQGVPRLAPAQGGPRVSWRYLQWNSLPQLPMDSDVVSPWFPHYDFEQGCWARVPSKC 168
           VGLSQGVPRLAPAQGGPRVSWRYLQWNSLPQLPMDSDVVSPWFPHYDFEQGCWARVPSKC
Sbjct: 97  VGLSQGVPRLAPAQGGPRVSWRYLQWNSLPQLPMDSDVVSPWFPHYDFEQGCWARVPSKC 156

Query: 169 VLDSPGTMGQT 179
           VLDSPGTMGQT
Sbjct: 157 VLDSPGTMGQT 167


>gi|226693407 TBC1 domain family, member 3H [Homo sapiens]
          Length = 549

 Score =  154 bits (389), Expect = 4e-38
 Identities = 93/190 (48%), Positives = 108/190 (56%), Gaps = 27/190 (14%)

Query: 1   MARTAFKVQRSKST----CAQWGLGSSGVRPRLAQGQLPHTVPMFLCSS----------- 45
           + R AFKVQ+ + T    C  W    +      A+ +   TV   L +S           
Sbjct: 300 ITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDE--DTVLKHLRASMKKLTRKQGDL 357

Query: 46  PEEAKPKQGSSAPRPELASPCGRKTLCKGSRQAPPGPQAHFQQCIWSASPPWVPLPFTPC 105
           P  AKP+QGSSA RP  AS  G KTLCKG RQAPPGP A F + IWSASPP  P   TPC
Sbjct: 358 PPPAKPEQGSSASRPVPASR-GGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPC 416

Query: 106 P--------VLVGLSQGVPRLAPAQGGPRVSWRYLQWNSLPQLPMDSDVVSPWFPHYDFE 157
           P          VG +QGVP  A AQGGP+ SWR+LQWNS+P+LP D DV  PWF HYDF 
Sbjct: 417 PGGAVREDTYPVG-TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFR 475

Query: 158 QGCWARVPSK 167
           Q CW R  S+
Sbjct: 476 QSCWVRAISQ 485


>gi|14149985 TBC1 domain family, member 3F [Homo sapiens]
          Length = 549

 Score =  154 bits (389), Expect = 4e-38
 Identities = 93/190 (48%), Positives = 108/190 (56%), Gaps = 27/190 (14%)

Query: 1   MARTAFKVQRSKST----CAQWGLGSSGVRPRLAQGQLPHTVPMFLCSS----------- 45
           + R AFKVQ+ + T    C  W    +      A+ +   TV   L +S           
Sbjct: 300 ITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDE--DTVLKHLRASMKKLTRKKGDL 357

Query: 46  PEEAKPKQGSSAPRPELASPCGRKTLCKGSRQAPPGPQAHFQQCIWSASPPWVPLPFTPC 105
           P  AKP+QGSSA RP  AS  G KTLCKG RQAPPGP A F + IWSASPP  P   TPC
Sbjct: 358 PPPAKPEQGSSASRPVPASR-GGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPC 416

Query: 106 P--------VLVGLSQGVPRLAPAQGGPRVSWRYLQWNSLPQLPMDSDVVSPWFPHYDFE 157
           P          VG +QGVP  A AQGGP+ SWR+LQWNS+P+LP D DV  PWF HYDF 
Sbjct: 417 PGGAVREDTYPVG-TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFR 475

Query: 158 QGCWARVPSK 167
           Q CW R  S+
Sbjct: 476 QSCWVRAISQ 485


>gi|183583565 TBC1 domain family, member 3 [Homo sapiens]
          Length = 549

 Score =  154 bits (389), Expect = 4e-38
 Identities = 93/190 (48%), Positives = 108/190 (56%), Gaps = 27/190 (14%)

Query: 1   MARTAFKVQRSKST----CAQWGLGSSGVRPRLAQGQLPHTVPMFLCSS----------- 45
           + R AFKVQ+ + T    C  W    +      A+ +   TV   L +S           
Sbjct: 300 ITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDE--DTVLKHLRASMKKLTRKKGDL 357

Query: 46  PEEAKPKQGSSAPRPELASPCGRKTLCKGSRQAPPGPQAHFQQCIWSASPPWVPLPFTPC 105
           P  AKP+QGSSA RP  AS  G KTLCKG RQAPPGP A F + IWSASPP  P   TPC
Sbjct: 358 PPPAKPEQGSSASRPVPASR-GGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPC 416

Query: 106 P--------VLVGLSQGVPRLAPAQGGPRVSWRYLQWNSLPQLPMDSDVVSPWFPHYDFE 157
           P          VG +QGVP  A AQGGP+ SWR+LQWNS+P+LP D DV  PWF HYDF 
Sbjct: 417 PGGAVREDTYPVG-TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFR 475

Query: 158 QGCWARVPSK 167
           Q CW R  S+
Sbjct: 476 QSCWVRAISQ 485


>gi|183583567 TBC1 domain family, member 3E [Homo sapiens]
          Length = 549

 Score =  154 bits (389), Expect = 4e-38
 Identities = 93/190 (48%), Positives = 108/190 (56%), Gaps = 27/190 (14%)

Query: 1   MARTAFKVQRSKST----CAQWGLGSSGVRPRLAQGQLPHTVPMFLCSS----------- 45
           + R AFKVQ+ + T    C  W    +      A+ +   TV   L +S           
Sbjct: 300 ITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDE--DTVLKHLRASMKKLTRKKGDL 357

Query: 46  PEEAKPKQGSSAPRPELASPCGRKTLCKGSRQAPPGPQAHFQQCIWSASPPWVPLPFTPC 105
           P  AKP+QGSSA RP  AS  G KTLCKG RQAPPGP A F + IWSASPP  P   TPC
Sbjct: 358 PPPAKPEQGSSASRPVPASR-GGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPC 416

Query: 106 P--------VLVGLSQGVPRLAPAQGGPRVSWRYLQWNSLPQLPMDSDVVSPWFPHYDFE 157
           P          VG +QGVP  A AQGGP+ SWR+LQWNS+P+LP D DV  PWF HYDF 
Sbjct: 417 PGGAVREDTYPVG-TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFR 475

Query: 158 QGCWARVPSK 167
           Q CW R  S+
Sbjct: 476 QSCWVRAISQ 485


>gi|149999613 TBC1 domain family, member 3B [Homo sapiens]
          Length = 549

 Score =  154 bits (389), Expect = 4e-38
 Identities = 93/190 (48%), Positives = 108/190 (56%), Gaps = 27/190 (14%)

Query: 1   MARTAFKVQRSKST----CAQWGLGSSGVRPRLAQGQLPHTVPMFLCSS----------- 45
           + R AFKVQ+ + T    C  W    +      A+ +   TV   L +S           
Sbjct: 300 ITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDE--DTVLKHLRASMKKLTRKQGDL 357

Query: 46  PEEAKPKQGSSAPRPELASPCGRKTLCKGSRQAPPGPQAHFQQCIWSASPPWVPLPFTPC 105
           P  AKP+QGSSA RP  AS  G KTLCKG RQAPPGP A F + IWSASPP  P   TPC
Sbjct: 358 PPPAKPEQGSSASRPVPASR-GGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPC 416

Query: 106 P--------VLVGLSQGVPRLAPAQGGPRVSWRYLQWNSLPQLPMDSDVVSPWFPHYDFE 157
           P          VG +QGVP  A AQGGP+ SWR+LQWNS+P+LP D DV  PWF HYDF 
Sbjct: 417 PGGAVREDTYPVG-TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFR 475

Query: 158 QGCWARVPSK 167
           Q CW R  S+
Sbjct: 476 QSCWVRAISQ 485


>gi|183583563 TBC1 domain family, member 3D [Homo sapiens]
          Length = 549

 Score =  154 bits (389), Expect = 4e-38
 Identities = 93/190 (48%), Positives = 108/190 (56%), Gaps = 27/190 (14%)

Query: 1   MARTAFKVQRSKST----CAQWGLGSSGVRPRLAQGQLPHTVPMFLCSS----------- 45
           + R AFKVQ+ + T    C  W    +      A+ +   TV   L +S           
Sbjct: 300 ITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDE--DTVLKHLRASMKKLTRKQGDL 357

Query: 46  PEEAKPKQGSSAPRPELASPCGRKTLCKGSRQAPPGPQAHFQQCIWSASPPWVPLPFTPC 105
           P  AKP+QGSSA RP  AS  G KTLCKG RQAPPGP A F + IWSASPP  P   TPC
Sbjct: 358 PPPAKPEQGSSASRPVPASR-GGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPC 416

Query: 106 P--------VLVGLSQGVPRLAPAQGGPRVSWRYLQWNSLPQLPMDSDVVSPWFPHYDFE 157
           P          VG +QGVP  A AQGGP+ SWR+LQWNS+P+LP D DV  PWF HYDF 
Sbjct: 417 PGGAVREDTYPVG-TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFR 475

Query: 158 QGCWARVPSK 167
           Q CW R  S+
Sbjct: 476 QSCWVRAISQ 485


>gi|90577185 TBC1 domain family member 3C [Homo sapiens]
          Length = 549

 Score =  154 bits (389), Expect = 4e-38
 Identities = 93/190 (48%), Positives = 108/190 (56%), Gaps = 27/190 (14%)

Query: 1   MARTAFKVQRSKST----CAQWGLGSSGVRPRLAQGQLPHTVPMFLCSS----------- 45
           + R AFKVQ+ + T    C  W    +      A+ +   TV   L +S           
Sbjct: 300 ITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDE--DTVLKHLRASMKKLTRKQGDL 357

Query: 46  PEEAKPKQGSSAPRPELASPCGRKTLCKGSRQAPPGPQAHFQQCIWSASPPWVPLPFTPC 105
           P  AKP+QGSSA RP  AS  G KTLCKG RQAPPGP A F + IWSASPP  P   TPC
Sbjct: 358 PPPAKPEQGSSASRPVPASR-GGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPC 416

Query: 106 P--------VLVGLSQGVPRLAPAQGGPRVSWRYLQWNSLPQLPMDSDVVSPWFPHYDFE 157
           P          VG +QGVP  A AQGGP+ SWR+LQWNS+P+LP D DV  PWF HYDF 
Sbjct: 417 PGGAVREDTYPVG-TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFR 475

Query: 158 QGCWARVPSK 167
           Q CW R  S+
Sbjct: 476 QSCWVRAISQ 485


>gi|157502205 TBC1 domain family, member 3G [Homo sapiens]
          Length = 549

 Score =  154 bits (389), Expect = 4e-38
 Identities = 93/190 (48%), Positives = 108/190 (56%), Gaps = 27/190 (14%)

Query: 1   MARTAFKVQRSKST----CAQWGLGSSGVRPRLAQGQLPHTVPMFLCSS----------- 45
           + R AFKVQ+ + T    C  W    +      A+ +   TV   L +S           
Sbjct: 300 ITRIAFKVQQKRLTKTSRCGPWARFCNRFVDTWARDE--DTVLKHLRASMKKLTRKQGDL 357

Query: 46  PEEAKPKQGSSAPRPELASPCGRKTLCKGSRQAPPGPQAHFQQCIWSASPPWVPLPFTPC 105
           P  AKP+QGSSA RP  AS  G KTLCKG RQAPPGP A F + IWSASPP  P   TPC
Sbjct: 358 PPPAKPEQGSSASRPVPASR-GGKTLCKGDRQAPPGPPARFPRPIWSASPPRAPRSSTPC 416

Query: 106 P--------VLVGLSQGVPRLAPAQGGPRVSWRYLQWNSLPQLPMDSDVVSPWFPHYDFE 157
           P          VG +QGVP  A AQGGP+ SWR+LQWNS+P+LP D DV  PWF HYDF 
Sbjct: 417 PGGAVREDTYPVG-TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVEGPWFRHYDFR 475

Query: 158 QGCWARVPSK 167
           Q CW R  S+
Sbjct: 476 QSCWVRAISQ 485


>gi|239756926 PREDICTED: similar to TBC1 domain family, member 3
           [Homo sapiens]
          Length = 424

 Score =  149 bits (377), Expect = 1e-36
 Identities = 82/141 (58%), Positives = 89/141 (63%), Gaps = 12/141 (8%)

Query: 46  PEEAKPKQGSSAPRPELASPCGRKTLCKGSRQAPPGPQAHFQQCIWSASPPWVPLPFTPC 105
           P  AKP+QGSSA RP  AS  G KTLCKG RQAPPGP A F   IWSASPP  P   TPC
Sbjct: 233 PPPAKPEQGSSASRPVPASR-GGKTLCKGDRQAPPGPPARFPWPIWSASPPRAPRSSTPC 291

Query: 106 P--------VLVGLSQGVPRLAPAQGGPRVSWRYLQWNSLPQLPMDSDVVSPWFPHYDFE 157
           P          VG +QGVP  A AQGGP+ SWR+LQWNS+P+LP D DV  PWF  YDF 
Sbjct: 292 PGGAVREDTYPVG-TQGVPSPALAQGGPQGSWRFLQWNSMPRLPTDLDVGDPWFRRYDFR 350

Query: 158 QGCWARVPSKCVLDSPGTMGQ 178
           Q CW R  S+   D P T  Q
Sbjct: 351 QSCWVRAISQ--EDQPATCWQ 369


>gi|109638751 ubiquitin specific protease 6 [Homo sapiens]
          Length = 1406

 Score =  149 bits (375), Expect = 2e-36
 Identities = 77/130 (59%), Positives = 87/130 (66%), Gaps = 10/130 (7%)

Query: 46  PEEAKPKQGSSAPRPELASPCGRKTLCKGSRQAPPGPQAHFQQCIWSASPPWVPLPFTPC 105
           P  AK +QGS APRP  AS  G KTLCKG RQAPPGP A FQ+ I SASPPW     TPC
Sbjct: 357 PPPAKREQGSLAPRPVPASR-GGKTLCKGYRQAPPGPPAQFQRPICSASPPWASRFSTPC 415

Query: 106 P--------VLVGLSQGVPRLAPAQGGPRVSWRYLQWNSLPQLPMDSDVVSPWFPHYDFE 157
           P          VG +QGVP LA AQGGP+ SWR+L+W S+P+LP D D+  PWFPHYDFE
Sbjct: 416 PGGAVREDTYPVG-TQGVPSLALAQGGPQGSWRFLEWKSMPRLPTDLDIGGPWFPHYDFE 474

Query: 158 QGCWARVPSK 167
             CW R  S+
Sbjct: 475 WSCWVRAISQ 484


>gi|23592228 extraembryonic, spermatogenesis, homeobox 1-like [Homo
           sapiens]
          Length = 406

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 32/96 (33%), Positives = 41/96 (42%), Gaps = 13/96 (13%)

Query: 33  QLPHTVPMFLCSSPEEAKPKQGSSAPRPELASPCGRKTLCKGSRQA--PPGPQAHFQQCI 90
           QLP   P  L   P   +P      PRP +A       +  GSR A  PPGP+       
Sbjct: 240 QLPR--PPVLPVPPMPPRPPMVPMPPRPPIAPMPPMAPVPPGSRMAPVPPGPR------- 290

Query: 91  WSASPPWVPL-PFTPCPVLVGLSQGVPRLAPAQGGP 125
            +  PPW P+ P  P P +  +  G P +AP   GP
Sbjct: 291 MAPVPPWPPMAPVPPWPPMAPVPTG-PPMAPVPPGP 325


>gi|239753000 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 171

 Score = 37.0 bits (84), Expect = 0.009
 Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 18/105 (17%)

Query: 21  GSSGVRPRLAQ-GQLPHTVPMFLCSSPEEAKPKQGSSAPRPELASPCGRKTLCKGSRQAP 79
           G S  RPR A+ G+ PH +    CS     +P  GS           G  TLC  + Q+ 
Sbjct: 8   GRSPPRPRRARPGRRPHLLRPRTCSRHIHPRPPSGS-----------GPTTLCSSTSQSR 56

Query: 80  PGPQAHFQQCIWSASPPWVPLPFTPCPVLVGLS----QGVPRLAP 120
           P  +A   +C++ + P   P    P P  +  S    + +PRL P
Sbjct: 57  PAAKASSWRCLYLSKPS--PATHYPAPDSLPSSALRRRRLPRLGP 99


>gi|134031945 SCO-spondin [Homo sapiens]
          Length = 5147

 Score = 34.3 bits (77), Expect = 0.059
 Identities = 33/110 (30%), Positives = 41/110 (37%), Gaps = 33/110 (30%)

Query: 22   SSGVRPRLAQGQLPHTVPMFLCSSPEEAKPKQGSSAPRPELAS-PCGRKTLCKGSRQAPP 80
            S  + P LA  Q  H     LC  P   +P  G+    P L + P  ++ LC       P
Sbjct: 4563 SPTLAPLLASEQHRHR----LCLDPATGRPWTGA----PHLCTAPLSQQRLC-------P 4607

Query: 81   GPQAHFQQCIWSASPPWVPLPFTPCPVLVGLSQGVPRLAPAQGGPRVSWR 130
             P A    C WS   PW     +PC V            P  GG R+ WR
Sbjct: 4608 DPGACPDSCQWSLWGPW-----SPCQV------------PCSGGFRLRWR 4640


>gi|41281612 zinc finger protein 828 [Homo sapiens]
          Length = 812

 Score = 33.9 bits (76), Expect = 0.077
 Identities = 42/161 (26%), Positives = 50/161 (31%), Gaps = 28/161 (17%)

Query: 25  VRPRLAQGQLPHTVPMFLCSSPEEAKPKQGSSAPRPELA--------SPCGRKTLCKGSR 76
           V P   +  L +  P      PE   P   SS   P LA        SP       K +R
Sbjct: 213 VSPESVKATLSNPKPQKQSHFPETLGPPSASSPESPVLAASPEPWGPSPAASPESRKSAR 272

Query: 77  QAPPGPQAHFQQCIWSASP-PWVPLP-FTPCPVLVGLSQGVPRLAPAQGGPRVSWRYLQW 134
              P P+        S SP PW P P  +P P      +  P ++P    P        W
Sbjct: 273 TTSPEPRKPSP----SESPEPWKPFPAVSPEP-----RRPAPAVSPGSWKPGPPGSPRPW 323

Query: 135 NSLPQL---------PMDSDVVSPWFPHYDFEQGCWARVPS 166
            S P           P  S    PW P      G W   PS
Sbjct: 324 KSNPSASSGPWKPAKPAPSVSPGPWKPIPSVSPGPWKPTPS 364



 Score = 27.7 bits (60), Expect = 5.5
 Identities = 32/112 (28%), Positives = 44/112 (39%), Gaps = 29/112 (25%)

Query: 45  SPEEAKPKQGSSAPRPELASPCGRKTLCKGSRQAP-PGPQAHFQQCIWSASPPWVPLPFT 103
           SPE +KP   SS P P  + P     +C+  + AP P P+            P  P P +
Sbjct: 173 SPEPSKPASVSS-PEPPKSVP-----VCESQKLAPVPSPE------------PQKPAPVS 214

Query: 104 PCPVLVGLSQGVPRLA---PAQGGPRVSWRYLQWNSLPQLPMDSDVVSPWFP 152
           P  V   LS   P+     P   GP  +       S P+ P+ +    PW P
Sbjct: 215 PESVKATLSNPKPQKQSHFPETLGPPSA-------SSPESPVLAASPEPWGP 259


>gi|241982802 HMG box domain containing 3 [Homo sapiens]
          Length = 1292

 Score = 33.1 bits (74), Expect = 0.13
 Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 3/99 (3%)

Query: 23  SGVRPRLAQGQLPHTVPMFLCSSPEEAKPKQGSSAPRPELASPCGRKTLCKGSRQAPPGP 82
           SGV+P +  G   +  P     +P E      +S+P P    P G   L  GSR      
Sbjct: 446 SGVQPEVTLGTTDNDSPGADVPTPSEGT---STSSPLPAPKKPTGVDLLTPGSRAPELKG 502

Query: 83  QAHFQQCIWSASPPWVPLPFTPCPVLVGLSQGVPRLAPA 121
           +A  +  + +A+ P   +   P  V  G S G+PR   A
Sbjct: 503 RARGKPSLLAAARPMRAILPAPVNVGRGSSMGLPRARQA 541


>gi|89040432 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 212

 Score = 33.1 bits (74), Expect = 0.13
 Identities = 33/128 (25%), Positives = 44/128 (34%), Gaps = 20/128 (15%)

Query: 19  GLGSSGVRPRLAQGQL-----------PHTVPMFLCSSPEEA--KPKQGSSAPRPELASP 65
           G G +G R R   G             P  +P   C S  E   +P+ G +  RP  ASP
Sbjct: 67  GRGGAGSRSRYCHGDGKLAAAAAGTVGPRWLPAGQCLSEAERPRRPEPGGARSRPVAASP 126

Query: 66  CGRKTLCKGSRQAPPGPQAHFQQCIWSASPPWVPLPFT-------PCPVLVGLSQGVPRL 118
                       +P  P +     + S  P   P P +       P P  + L+ G    
Sbjct: 127 AASSRARSRPESSPGAPGSSVPALLPSLPPLAAPRPLSARPRLRPPQPQPLALTVGNGPR 186

Query: 119 APAQGGPR 126
           AP  GG R
Sbjct: 187 APPAGGSR 194


>gi|118918421 ets variant gene 4 (E1A enhancer binding protein,
           E1AF) [Homo sapiens]
          Length = 484

 Score = 32.3 bits (72), Expect = 0.22
 Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 26/112 (23%)

Query: 29  LAQGQLPHTVPMFLCSSPEE--------AKPKQGSSAPRPELASPCGRKTLCKGSRQAPP 80
           LA+ Q+P +   F+     E         + K+   +PR + A  C RK         PP
Sbjct: 65  LAEAQVPDSDEQFVPDFHSENLAFHSPTTRIKKEPQSPRTDPALSCSRK---------PP 115

Query: 81  GPQAHFQQCIWSAS--PPWVPLPFTPCPVLVGLSQGVPRLAPAQGGPRVSWR 130
            P  H +QC++S++  PP      +P P  +G S       P Q  PR   R
Sbjct: 116 LPYHHGEQCLYSSAYDPPRQIAIKSPAPGALGQS-------PLQPFPRAEQR 160


>gi|24307883 ets variant gene 4 (E1A enhancer binding protein, E1AF)
           [Homo sapiens]
          Length = 484

 Score = 32.3 bits (72), Expect = 0.22
 Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 26/112 (23%)

Query: 29  LAQGQLPHTVPMFLCSSPEE--------AKPKQGSSAPRPELASPCGRKTLCKGSRQAPP 80
           LA+ Q+P +   F+     E         + K+   +PR + A  C RK         PP
Sbjct: 65  LAEAQVPDSDEQFVPDFHSENLAFHSPTTRIKKEPQSPRTDPALSCSRK---------PP 115

Query: 81  GPQAHFQQCIWSAS--PPWVPLPFTPCPVLVGLSQGVPRLAPAQGGPRVSWR 130
            P  H +QC++S++  PP      +P P  +G S       P Q  PR   R
Sbjct: 116 LPYHHGEQCLYSSAYDPPRQIAIKSPAPGALGQS-------PLQPFPRAEQR 160


>gi|169210192 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 194

 Score = 32.3 bits (72), Expect = 0.22
 Identities = 31/106 (29%), Positives = 40/106 (37%), Gaps = 13/106 (12%)

Query: 39  PMFLCSSPEEAKPKQGSSAPRPELASPCGRKTLC---KGSRQAPPGPQAHFQQCIWSASP 95
           P+   + P    P  G+    P LA PC   TLC    G R+A  GP+          + 
Sbjct: 80  PLSAPADPNTHPPAPGTQPALPPLARPCRVSTLCGSRLGRRRAGEGPRP-------GRAL 132

Query: 96  PWVPLP--FTPCPVLVGLSQGVPRLAPAQGGPR-VSWRYLQWNSLP 138
           P++ LP    P P L       PR        R VS   L W+  P
Sbjct: 133 PFLSLPCQAVPAPTLTPTPPDPPRAGRKCNERRAVSLVLLGWSQGP 178


>gi|113425957 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 194

 Score = 32.3 bits (72), Expect = 0.22
 Identities = 31/106 (29%), Positives = 40/106 (37%), Gaps = 13/106 (12%)

Query: 39  PMFLCSSPEEAKPKQGSSAPRPELASPCGRKTLC---KGSRQAPPGPQAHFQQCIWSASP 95
           P+   + P    P  G+    P LA PC   TLC    G R+A  GP+          + 
Sbjct: 80  PLSAPADPNTHPPAPGTQPALPPLARPCRVSTLCGSRLGRRRAGEGPRP-------GRAL 132

Query: 96  PWVPLP--FTPCPVLVGLSQGVPRLAPAQGGPR-VSWRYLQWNSLP 138
           P++ LP    P P L       PR        R VS   L W+  P
Sbjct: 133 PFLSLPCQAVPAPTLTPTPPDPPRAGRKCNERRAVSLVLLGWSQGP 178


>gi|30039694 zinc finger protein 598 [Homo sapiens]
          Length = 904

 Score = 32.3 bits (72), Expect = 0.22
 Identities = 30/98 (30%), Positives = 37/98 (37%), Gaps = 17/98 (17%)

Query: 34  LPHTVPMFLCSSPEEAKPKQGSSAPRPELASPCG--RKTLCKGSRQAPP--------GPQ 83
           LP  +  F C +P+E  P  G   P P +  P G     L KG+   PP         P 
Sbjct: 653 LPRPLGSFPCPTPQEDFPALGGPCP-PRMPPPPGFSAVVLLKGTPPPPPPGLVPPISKPP 711

Query: 84  AHFQQCIWSASPPWVPLPFTPCPVLVGLSQGVPRLAPA 121
             F   + S  P  VP P T        +   PRL PA
Sbjct: 712 PGFSGLLPSPHPACVPSPATT------TTTKAPRLLPA 743


>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
           subunit [Homo sapiens]
          Length = 551

 Score = 32.0 bits (71), Expect = 0.29
 Identities = 33/107 (30%), Positives = 35/107 (32%), Gaps = 13/107 (12%)

Query: 21  GSSGVRPRLAQGQLPHTVPMFLCSSPEEAKPKQGSSAPRPELASPCGRKTLCKGSRQAPP 80
           G  G  P    GQ P   P+     P    P        P LA P  R     G R  PP
Sbjct: 222 GPGGPPPPFPAGQTPPRPPLGPPGPPGPPGPPPPGQVLPPPLAGPPNR-----GDRPPPP 276

Query: 81  --GPQAHFQQCIWSASPPWVPLPFTPCPVLVGLSQGVPRLAPAQGGP 125
              P   F Q      PP  PLP  P P + G         P QG P
Sbjct: 277 VLFPGQPFGQ------PPLGPLPPGPPPPVPGYGPPPGPPPPQQGPP 317


>gi|239753839 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 257

 Score = 32.0 bits (71), Expect = 0.29
 Identities = 26/76 (34%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 56  SAPRPELASPCGRKTLCKGSRQ-APPG----PQAHFQQCIWSASP-PWVPLPFTPCPVLV 109
           S P   L  PCG  +L  GSR    PG    P++      W+A P P  P P  P    V
Sbjct: 148 SVPARRLPPPCGGTSLGAGSRALRRPGSAALPRSPSSSRRWAAMPGPGAPRPGAPGTWPV 207

Query: 110 GLSQGVPRLAPAQGGP 125
           G +   P  A A   P
Sbjct: 208 GFAVAAPPAAAASVAP 223


>gi|209180481 Cas-Br-M (murine) ecotropic retroviral transforming
           sequence-like 1 [Homo sapiens]
          Length = 491

 Score = 32.0 bits (71), Expect = 0.29
 Identities = 37/124 (29%), Positives = 47/124 (37%), Gaps = 25/124 (20%)

Query: 44  SSPEEAKPKQGSSAPRPELASPCGRKTLCKGSRQAPPGPQAH-FQQCIWSASPP----WV 98
           S P    P Q   AP P    P         S   P  PQA      ++S +PP      
Sbjct: 329 SHPHHIMPPQQHYAPPPPPPPPI--------SHPMPHPPQAAGTPHLVYSQAPPPPMTSA 380

Query: 99  PLPFTPCPVLVGLSQGVPRL--------APAQGGPRVSW---RYLQWNSLPQLPMDSDVV 147
           P P TP P  + ++Q  P +         P  GGP V+     +   NSLPQ   D   +
Sbjct: 381 PPPITPPPGHI-IAQMPPYMNHPPPGPPPPQHGGPPVTAPPPHHYNPNSLPQFTEDQGTL 439

Query: 148 SPWF 151
           SP F
Sbjct: 440 SPPF 443


>gi|149944590 SRR1 domain containing [Homo sapiens]
          Length = 339

 Score = 32.0 bits (71), Expect = 0.29
 Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 3/44 (6%)

Query: 47 EEAKPKQGSSA---PRPELASPCGRKTLCKGSRQAPPGPQAHFQ 87
          + A P++  SA   PR   A+P GR+   +G   AP GP+A F+
Sbjct: 13 QAAAPRKRRSAARRPRRREAAPRGREAAPRGREAAPRGPEAEFE 56


>gi|188497689 chromatin licensing and DNA replication factor 1 [Homo
           sapiens]
          Length = 546

 Score = 31.6 bits (70), Expect = 0.38
 Identities = 46/165 (27%), Positives = 61/165 (36%), Gaps = 17/165 (10%)

Query: 27  PRLAQGQLPHTVPMFLCSSP--EEAKPKQGSSAPRPELASPCGRKTLCK-GSRQAPPGPQ 83
           PR    ++P   P  L   P  E+    Q   A    L SP   K L +   R A P   
Sbjct: 333 PRFNVDEVPDIEPAALPQPPATEKLTTAQEVLARARNLISPRMEKALSQLALRSAAPSSP 392

Query: 84  AHFQQCIWSASPPWVPLPFTPCPVLVGLSQGV----------PRLAPAQGGPRVSWRYLQ 133
              +  +  A+PP  P   +P   L G+SQ +           +LA     P    R  +
Sbjct: 393 GSPRPAL-PATPPATPPAASPS-ALKGVSQDLLERIRAKEAQKQLAQMTRCPEQEQRLQR 450

Query: 134 WNSLPQLP--MDSDVVSPWFPHYDFEQGCWARVPSKCVLDSPGTM 176
              LP+L   + S  VS   P    E  C   V S C + SPG M
Sbjct: 451 LERLPELARVLRSVFVSERKPALSMEVACARMVGSCCTIMSPGEM 495


>gi|91208420 bassoon protein [Homo sapiens]
          Length = 3926

 Score = 31.6 bits (70), Expect = 0.38
 Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 6/102 (5%)

Query: 21  GSSGVRPRLAQGQLPHTVPMFLCSSPEEAKPKQGSSAPRPELASPCGRKTLCKGSRQAPP 80
           G+S ++ +  QG    + P+     P +A P    ++P P  ASP  +        + P 
Sbjct: 549 GTSPLKQKGPQGLGQPSGPL-----PAKASPLSTKASPLPSKASPQAKPLRASEPSKTPS 603

Query: 81  GPQAHFQQCIWSASP-PWVPLPFTPCPVLVGLSQGVPRLAPA 121
             Q    +    A P P  P   TP P    +  GV R  PA
Sbjct: 604 SVQEKKTRVPTKAEPMPKPPPETTPTPATPKVKSGVRRAEPA 645


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.134    0.464 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,904,288
Number of Sequences: 37866
Number of extensions: 632282
Number of successful extensions: 2161
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 145
Number of HSP's that attempted gapping in prelim test: 2060
Number of HSP's gapped (non-prelim): 231
length of query: 179
length of database: 18,247,518
effective HSP length: 96
effective length of query: 83
effective length of database: 14,612,382
effective search space: 1212827706
effective search space used: 1212827706
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.