Guide to the Human Genome
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Name: LOC100294403 Sequence: fasta or formatted (130aa) NCBI GI: 239751269
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.0         13           1
 C cysteine            4.6          6           1
 D aspartate           3.8          5           2
 E glutamate           2.3          3           1
 F phenylalanine       1.5          2           1
 G glycine            13.1         17           2
 H histidine           4.6          6           2
 I isoleucine          0.8          1           1
 K lysine              5.4          7           2
 L leucine            10.0         13           3
 M methionine          1.5          2           1
 N asparagine          2.3          3           1
 P proline            11.5         15           2
 Q glutamine           3.1          4           1
 R arginine            8.5         11           2
 S serine              6.9          9           1
 T threonine           5.4          7           1
 V valine              3.1          4           1
 W tryptophan          1.5          2           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
C7orf11               0.031   chromosome 7 open reading frame 11 
LOC100292259          0.027   PREDICTED: hypothetical protein 
LOC100289480          0.027   PREDICTED: hypothetical protein 
LOC100289480          0.027   PREDICTED: hypothetical protein XP_002342365 
MLL4                  0.019   myeloid/lymphoid or mixed-lineage leukemia 4 
LOC100289969          0.016   PREDICTED: hypothetical protein XP_002347692 
LOC100129098          0.016   PREDICTED: hypothetical protein 
LOC100129098          0.016   PREDICTED: hypothetical protein 
LOC100129098          0.016   PREDICTED: hypothetical protein 
DLGAP3                0.012   discs, large (Drosophila) homolog-associated protei...
ARID1A                0.012   AT rich interactive domain 1A isoform b 
FOXN1                 0.012   forkhead box N1 
PRDM15                0.012   PR domain containing 15 isoform 2 
PRDM15                0.012   PR domain containing 15 isoform 1 
LOC100291071          0.012   PREDICTED: hypothetical protein XP_002346951 
LOC100287198          0.012   PREDICTED: hypothetical protein XP_002342815 
LOC100287198          0.012   PREDICTED: hypothetical protein 
KIAA0753              0.012   hypothetical protein LOC9851 
LOC100291878          0.008   PREDICTED: similar to RIKEN cDNA C230030N03 
LOC100287514          0.008   PREDICTED: hypothetical protein XP_002343754 
LOC100130840          0.008   PREDICTED: hypothetical protein 
LOC100130840          0.008   PREDICTED: hypothetical protein 
LOC100130840          0.008   PREDICTED: hypothetical protein 
ITIH4                 0.008   inter-alpha (globulin) inhibitor H4 
LOC729991-MEF2B       0.008   myocyte enhancer factor 2B isoform b 
LOC729590             0.008   PREDICTED: hypothetical protein 
LOC100293268          0.008   PREDICTED: hypothetical protein 
LOC729590             0.008   PREDICTED: hypothetical protein 
LOC729590             0.008   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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