Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239751148
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751148 PREDICTED: hypothetical protein XP_002347729 [Homo
sapiens]
(72 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751148 PREDICTED: hypothetical protein XP_002347729 [Homo ... 152 4e-38
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 43 5e-05
gi|166235140 seizure related 6 homolog (mouse)-like 2 isoform 4 ... 40 3e-04
gi|166235136 seizure related 6 homolog (mouse)-like 2 isoform 2 ... 40 4e-04
gi|110832843 TBP-associated factor 4 [Homo sapiens] 39 7e-04
gi|41152235 ubiquitin specific protease 51 [Homo sapiens] 39 9e-04
gi|15029506 homeobox D8 [Homo sapiens] 37 0.003
gi|145386517 phostensin [Homo sapiens] 37 0.003
gi|199559805 phostensin [Homo sapiens] 37 0.003
gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens] 37 0.003
gi|25777598 diacylglycerol kinase, delta 130kDa isoform 2 [Homo ... 37 0.003
gi|82546824 forkhead box K1 [Homo sapiens] 37 0.003
gi|119395760 diaphanous 1 isoform 2 [Homo sapiens] 37 0.004
gi|119395758 diaphanous 1 isoform 1 [Homo sapiens] 37 0.004
gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens] 37 0.004
gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens] 37 0.004
gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens] 37 0.004
gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens] 37 0.004
gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3 ... 37 0.004
gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2 ... 37 0.004
gi|40789229 splicing factor, arginine/serine-rich 15 isoform 1 [... 37 0.004
gi|55956904 mitogen-activated protein kinase kinase kinase 4 iso... 37 0.004
gi|55956902 mitogen-activated protein kinase kinase kinase 4 iso... 37 0.004
gi|39812378 RAN binding protein 9 [Homo sapiens] 36 0.006
gi|169163027 PREDICTED: similar to Putative acrosin-like proteas... 36 0.006
gi|115430252 serine threonine kinase 39 (STE20/SPS1 homolog, yea... 36 0.007
gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo sap... 36 0.007
gi|154813204 inhibin beta B subunit preproprotein [Homo sapiens] 36 0.007
gi|153792074 proline rich 12 [Homo sapiens] 36 0.007
gi|4507691 transformation/transcription domain-associated protei... 35 0.010
>gi|239751148 PREDICTED: hypothetical protein XP_002347729 [Homo
sapiens]
Length = 72
Score = 152 bits (385), Expect = 4e-38
Identities = 72/72 (100%), Positives = 72/72 (100%)
Query: 1 MRFPEAVVVTTPPAATAAAPPPAPASPPPPPAPLSWGTLRRLRGTMVGIFIAPEGTRPAL 60
MRFPEAVVVTTPPAATAAAPPPAPASPPPPPAPLSWGTLRRLRGTMVGIFIAPEGTRPAL
Sbjct: 1 MRFPEAVVVTTPPAATAAAPPPAPASPPPPPAPLSWGTLRRLRGTMVGIFIAPEGTRPAL 60
Query: 61 APVWMASCLRRL 72
APVWMASCLRRL
Sbjct: 61 APVWMASCLRRL 72
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 43.1 bits (100), Expect = 5e-05
Identities = 23/48 (47%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 12 PPAATAAAPPPAPASPPPPPAPLSWGTLRRLRGTMVGIFIAPEGTRPA 59
P AA AAAPPP PA PPPPPAP++ R AP PA
Sbjct: 119 PAAAAAAAPPPTPA-PPPPPAPVAAAAPARAPRAAAAAATAPPSPGPA 165
Score = 32.7 bits (73), Expect = 0.063
Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 7/37 (18%)
Query: 4 PEAVVVTTPPAATAAAPPPAPAS-------PPPPPAP 33
P A PPA APPPA A+ PP PPAP
Sbjct: 184 PAAPPAVAPPAGPRRAPPPAVAAREPPLPPPPQPPAP 220
Score = 32.0 bits (71), Expect = 0.11
Identities = 15/23 (65%), Positives = 16/23 (69%), Gaps = 3/23 (13%)
Query: 14 AATAAAPPPAPASPP---PPPAP 33
AA AAPPPAPA+PP PP P
Sbjct: 174 AAPLAAPPPAPAAPPAVAPPAGP 196
Score = 28.5 bits (62), Expect = 1.2
Identities = 21/75 (28%), Positives = 25/75 (33%), Gaps = 17/75 (22%)
Query: 4 PEAVVVTTPPAATAAAPPPAPA----------------SPPPPPAPLSWGTLRRLRGTMV 47
P A PP A PPPAP + PP P P G + +
Sbjct: 119 PAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPPSPGPAQPGPRAQRAAPLA 178
Query: 48 GIFIAPEGTRPALAP 62
AP PA+AP
Sbjct: 179 APPPAP-AAPPAVAP 192
Score = 27.3 bits (59), Expect = 2.6
Identities = 13/31 (41%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 4 PEAVVVTTPPAATAAAPPPAPA-SPPPPPAP 33
P AV PP PP P PPPP P
Sbjct: 201 PPAVAAREPPLPPPPQPPAPPQQQQPPPPQP 231
Score = 26.9 bits (58), Expect = 3.4
Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 12 PPAATAAAPPPAPAS-PPPPPAP 33
PP A AP A A+ PPP PAP
Sbjct: 111 PPRAPRGAPAAAAAAAPPPTPAP 133
Score = 26.6 bits (57), Expect = 4.5
Identities = 12/27 (44%), Positives = 12/27 (44%)
Query: 4 PEAVVVTTPPAATAAAPPPAPASPPPP 30
P A P A A APP P PPP
Sbjct: 176 PLAAPPPAPAAPPAVAPPAGPRRAPPP 202
>gi|166235140 seizure related 6 homolog (mouse)-like 2 isoform 4
[Homo sapiens]
Length = 809
Score = 40.4 bits (93), Expect = 3e-04
Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 4 PEAVVVTTPPAATAAAPPPAPASPPPPPAPLSWGTLRRLRGTMVGIFIAPEGTRPALAPV 63
P A + TPP T A PPP+PASP PP P T I T +P
Sbjct: 117 PTAPELLTPPPGTTAPPPPSPASPGPPLGPEGGE-----EETTTTIITTTTVTTTVTSPA 171
Query: 64 WMASC 68
++ SC
Sbjct: 172 YLLSC 176
>gi|166235136 seizure related 6 homolog (mouse)-like 2 isoform 2
[Homo sapiens]
Length = 910
Score = 40.0 bits (92), Expect = 4e-04
Identities = 17/30 (56%), Positives = 19/30 (63%)
Query: 4 PEAVVVTTPPAATAAAPPPAPASPPPPPAP 33
P A + TPP T A PPP+PASP PP P
Sbjct: 117 PTAPELLTPPPGTTAPPPPSPASPGPPLGP 146
Score = 27.3 bits (59), Expect = 2.6
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 4 PEAVVVTTPPAATAAAPPPAPASPPPPPAPLSWG 37
P V P A PPP + PPPP+P S G
Sbjct: 109 PNGVRGAGPTAPELLTPPPGTTA-PPPPSPASPG 141
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 39.3 bits (90), Expect = 7e-04
Identities = 27/59 (45%), Positives = 29/59 (49%), Gaps = 8/59 (13%)
Query: 4 PEAVVVTTPPAATAAAPPPAPASPPPPPAPLSWGTLRRLRGTMVGIFIAPEGTRPALAP 62
P A +PPAA A A PA A PPPPPAP TL R G G P PA+ P
Sbjct: 249 PPAPAAPSPPAAPAPA-APAAAPPPPPPAP---ATLARPPGHPAG----PPTAAPAVPP 299
Score = 28.5 bits (62), Expect = 1.2
Identities = 12/20 (60%), Positives = 12/20 (60%)
Query: 14 AATAAAPPPAPASPPPPPAP 33
AA AA P PAPA P P P
Sbjct: 144 AAVAAGPEPAPAGPAKPAGP 163
Score = 27.7 bits (60), Expect = 2.0
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 4 PEAVVVTTPPAATAAAPPPAPASPPPPPA 32
P + PP A P APA PPP A
Sbjct: 275 PAPATLARPPGHPAGPPTAAPAVPPPAAA 303
Score = 27.3 bits (59), Expect = 2.6
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 6/31 (19%)
Query: 8 VVTTPPAATAAAPPPAP------ASPPPPPA 32
VV+ PA A A P AP A+P PPPA
Sbjct: 62 VVSGSPAGAAGAGPAAPAEGAPGAAPEPPPA 92
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/50 (32%), Positives = 20/50 (40%), Gaps = 3/50 (6%)
Query: 17 AAAPPPAPASPPPPPAPLSWGTLRRLRGTMVGIFIAPEGTRPALAPVWMA 66
AA PPPAP +P P + + L T G R L P +A
Sbjct: 387 AAVPPPAPGTPTGLPKGAAGAVTQSLSRTPTA---TTSGIRATLTPTVLA 433
>gi|41152235 ubiquitin specific protease 51 [Homo sapiens]
Length = 711
Score = 38.9 bits (89), Expect = 9e-04
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 9 VTTPPAATAAAPPPAPASPPPPPAPLSW-GTLRRLR 43
++ PP A PPP P PPP P P +W G+ RR R
Sbjct: 120 LSAPPPPPARPPPPPPPPPPPAPRPRAWRGSRRRSR 155
Score = 33.5 bits (75), Expect = 0.037
Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 7/56 (12%)
Query: 13 PAATAAAPPPAPASPPPPPAPLSWGTLRRLRGTMVGIFIAPEGTRPALAPVWMASC 68
P +A PPPA PPPPP P R RG+ +RP P SC
Sbjct: 118 PGLSAPPPPPARPPPPPPPPPPPAPRPRAWRGSR-------RRSRPGSRPQTRRSC 166
>gi|15029506 homeobox D8 [Homo sapiens]
Length = 290
Score = 37.4 bits (85), Expect = 0.003
Identities = 15/23 (65%), Positives = 16/23 (69%)
Query: 11 TPPAATAAAPPPAPASPPPPPAP 33
+P AA AAPPP P PPPPP P
Sbjct: 100 SPAAAYQAAPPPPPHPPPPPPPP 122
>gi|145386517 phostensin [Homo sapiens]
Length = 613
Score = 37.4 bits (85), Expect = 0.003
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 5 EAVVVTTPPAATAAAPPPAPASPPPPPAPL 34
EAV + PP A + PPPAP +P PP PL
Sbjct: 419 EAVELQPPPPAPLSPPPPAPTAPQPPGDPL 448
>gi|199559805 phostensin [Homo sapiens]
Length = 613
Score = 37.4 bits (85), Expect = 0.003
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 5 EAVVVTTPPAATAAAPPPAPASPPPPPAPL 34
EAV + PP A + PPPAP +P PP PL
Sbjct: 419 EAVELQPPPPAPLSPPPPAPTAPQPPGDPL 448
>gi|122937251 lysine (K)-specific demethylase 6B [Homo sapiens]
Length = 1682
Score = 37.0 bits (84), Expect = 0.003
Identities = 18/50 (36%), Positives = 23/50 (46%)
Query: 12 PPAATAAAPPPAPASPPPPPAPLSWGTLRRLRGTMVGIFIAPEGTRPALA 61
PP A PPP+ PPPPP P L+ L + G GT A++
Sbjct: 777 PPPPLAKFPPPSQPQPPPPPPPSPASLLKSLASVLEGQKYCYRGTGAAVS 826
Score = 33.5 bits (75), Expect = 0.037
Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 6/61 (9%)
Query: 9 VTTPPAATAAAPPPAP--ASPPPPPAPLSWGTLRRLR---GTMVGIFIAPEG-TRPALAP 62
++ PP ++ PPP P PPPPPA L R R + +F EG RPA P
Sbjct: 459 LSLPPGPSSPPPPPCPRLLRPPPPPAWLKGPACRAAREDGEILEELFFGTEGPPRPAPPP 518
Query: 63 V 63
+
Sbjct: 519 L 519
Score = 32.3 bits (72), Expect = 0.082
Identities = 14/22 (63%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Query: 13 PAATA-AAPPPAPASPPPPPAP 33
PAAT + PP P+SPPPPP P
Sbjct: 453 PAATPHLSLPPGPSSPPPPPCP 474
Score = 30.8 bits (68), Expect = 0.24
Identities = 11/21 (52%), Positives = 11/21 (52%)
Query: 13 PAATAAAPPPAPASPPPPPAP 33
P PPP P PPPPP P
Sbjct: 241 PPGLPLPPPPLPPPPPPPPPP 261
Score = 30.4 bits (67), Expect = 0.31
Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 4/30 (13%)
Query: 4 PEAVVVTTPPAATAAAPPPAPASPPPPPAP 33
P + + PP PPP P PPPPP P
Sbjct: 241 PPGLPLPPPPLP----PPPPPPPPPPPPLP 266
Score = 30.0 bits (66), Expect = 0.41
Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 12 PPAATAAAPP--PAPASPPPPPAPL 34
PP PP P P PPPPP PL
Sbjct: 241 PPGLPLPPPPLPPPPPPPPPPPPPL 265
Score = 26.6 bits (57), Expect = 4.5
Identities = 14/31 (45%), Positives = 14/31 (45%), Gaps = 5/31 (16%)
Query: 6 AVVVTTPPAATAAAPP-----PAPASPPPPP 31
AV TT T A P PA PPPPP
Sbjct: 750 AVTTTTTTTTTTTATQEEEKKPPPALPPPPP 780
Score = 26.6 bits (57), Expect = 4.5
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 12 PPAATAAAPPPAPASPPPPPA 32
PP A A PAP++ P PP+
Sbjct: 1046 PPTAPAPPSAPAPSAQPTPPS 1066
>gi|25777598 diacylglycerol kinase, delta 130kDa isoform 2 [Homo
sapiens]
Length = 1214
Score = 37.0 bits (84), Expect = 0.003
Identities = 14/20 (70%), Positives = 14/20 (70%)
Query: 14 AATAAAPPPAPASPPPPPAP 33
AA A APPP P PPPPP P
Sbjct: 2 AAAAGAPPPGPPQPPPPPPP 21
>gi|82546824 forkhead box K1 [Homo sapiens]
Length = 733
Score = 37.0 bits (84), Expect = 0.003
Identities = 16/30 (53%), Positives = 16/30 (53%)
Query: 4 PEAVVVTTPPAATAAAPPPAPASPPPPPAP 33
P A AAAPPPAPA P PPP P
Sbjct: 23 PVLCAAAAAAAFPAAAPPPAPAQPQPPPGP 52
Score = 36.2 bits (82), Expect = 0.006
Identities = 16/31 (51%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 3 FPEAVVVTTPPAATAAAPPPAPASPPPPPAP 33
FP A PPA PPP P PPPPP P
Sbjct: 34 FPAAA---PPPAPAQPQPPPGPPPPPPPPLP 61
>gi|119395760 diaphanous 1 isoform 2 [Homo sapiens]
Length = 1263
Score = 36.6 bits (83), Expect = 0.004
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 8 VVTTPPAATAAAPPPAPASPPPPPAPLSWG 37
++ PPA + PP P PPPPP PL G
Sbjct: 586 IIPPPPAPGDSTTPPPPPPPPPPPPPLPGG 615
Score = 33.5 bits (75), Expect = 0.037
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 8/36 (22%)
Query: 6 AVVVTTPPAATAAAP-PPAPASP-------PPPPAP 33
A +T PP+ + AP PPAP P PPPPAP
Sbjct: 558 AAAITVPPSVPSRAPVPPAPPLPGDSGTIIPPPPAP 593
Score = 32.3 bits (72), Expect = 0.082
Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Query: 4 PEAVVVTTP---PAATAAAPPP-----APASPPPPPAPLSWG 37
PE V + +P P TA PPP A PPPPP P S G
Sbjct: 649 PEGVGIPSPSSLPGGTAIPPPPPLPGSARIPPPPPPLPGSAG 690
Score = 30.4 bits (67), Expect = 0.31
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 9/38 (23%)
Query: 4 PEAVVVTTPPA---ATAAAPPPAPAS-----PPPPPAP 33
P V +++PP+ TA +PPP P S PPPPP P
Sbjct: 613 PGGVCISSPPSLPGGTAISPPP-PLSGDATIPPPPPLP 649
Score = 29.6 bits (65), Expect = 0.53
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 7/35 (20%)
Query: 6 AVVVTTPP----AATAAAPPPAPA---SPPPPPAP 33
A V PP + T PPPAP +PPPPP P
Sbjct: 571 APVPPAPPLPGDSGTIIPPPPAPGDSTTPPPPPPP 605
Score = 28.9 bits (63), Expect = 0.91
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 9/39 (23%)
Query: 4 PEAVVVTTPPAATAAA-----PPPAPAS----PPPPPAP 33
P + PP +A PPP P S PPPPP P
Sbjct: 661 PGGTAIPPPPPLPGSARIPPPPPPLPGSAGIPPPPPPLP 699
Score = 28.9 bits (63), Expect = 0.91
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Query: 12 PPAATAAAPPPAPASP-----PPPPAPLSWG 37
P +A PPP P P PPPP PL G
Sbjct: 684 PLPGSAGIPPPPPPLPGEAGMPPPPPPLPGG 714
Score = 26.2 bits (56), Expect = 5.9
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 20 PPPAPASPPPPPAPLSWG 37
PPP P PPP P +G
Sbjct: 730 PPPPPGMGMPPPPPFGFG 747
>gi|119395758 diaphanous 1 isoform 1 [Homo sapiens]
Length = 1272
Score = 36.6 bits (83), Expect = 0.004
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 8 VVTTPPAATAAAPPPAPASPPPPPAPLSWG 37
++ PPA + PP P PPPPP PL G
Sbjct: 595 IIPPPPAPGDSTTPPPPPPPPPPPPPLPGG 624
Score = 33.5 bits (75), Expect = 0.037
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 8/36 (22%)
Query: 6 AVVVTTPPAATAAAP-PPAPASP-------PPPPAP 33
A +T PP+ + AP PPAP P PPPPAP
Sbjct: 567 AAAITVPPSVPSRAPVPPAPPLPGDSGTIIPPPPAP 602
Score = 32.3 bits (72), Expect = 0.082
Identities = 19/42 (45%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Query: 4 PEAVVVTTP---PAATAAAPPP-----APASPPPPPAPLSWG 37
PE V + +P P TA PPP A PPPPP P S G
Sbjct: 658 PEGVGIPSPSSLPGGTAIPPPPPLPGSARIPPPPPPLPGSAG 699
Score = 30.4 bits (67), Expect = 0.31
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 9/38 (23%)
Query: 4 PEAVVVTTPPA---ATAAAPPPAPAS-----PPPPPAP 33
P V +++PP+ TA +PPP P S PPPPP P
Sbjct: 622 PGGVCISSPPSLPGGTAISPPP-PLSGDATIPPPPPLP 658
Score = 29.6 bits (65), Expect = 0.53
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 7/35 (20%)
Query: 6 AVVVTTPP----AATAAAPPPAPA---SPPPPPAP 33
A V PP + T PPPAP +PPPPP P
Sbjct: 580 APVPPAPPLPGDSGTIIPPPPAPGDSTTPPPPPPP 614
Score = 28.9 bits (63), Expect = 0.91
Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 9/39 (23%)
Query: 4 PEAVVVTTPPAATAAA-----PPPAPAS----PPPPPAP 33
P + PP +A PPP P S PPPPP P
Sbjct: 670 PGGTAIPPPPPLPGSARIPPPPPPLPGSAGIPPPPPPLP 708
Score = 28.9 bits (63), Expect = 0.91
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Query: 12 PPAATAAAPPPAPASP-----PPPPAPLSWG 37
P +A PPP P P PPPP PL G
Sbjct: 693 PLPGSAGIPPPPPPLPGEAGMPPPPPPLPGG 723
Score = 26.2 bits (56), Expect = 5.9
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 20 PPPAPASPPPPPAPLSWG 37
PPP P PPP P +G
Sbjct: 739 PPPPPGMGMPPPPPFGFG 756
>gi|149158696 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 36.6 bits (83), Expect = 0.004
Identities = 14/19 (73%), Positives = 14/19 (73%)
Query: 15 ATAAAPPPAPASPPPPPAP 33
AT APPP P PPPPPAP
Sbjct: 646 ATQTAPPPPPPPPPPPPAP 664
Score = 30.4 bits (67), Expect = 0.31
Identities = 13/24 (54%), Positives = 13/24 (54%)
Query: 10 TTPPAATAAAPPPAPASPPPPPAP 33
TT A TA P PA PPP P P
Sbjct: 571 TTNTATTAGPAPGGPAQPPPTPQP 594
Score = 26.9 bits (58), Expect = 3.4
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 3 FPEAVVVTTPPAATAAAPPPAPA--SPPPPPAP 33
F +A PP PPPAP + PPP +P
Sbjct: 643 FLQATQTAPPPPPPPPPPPPAPEQQTMPPPGSP 675
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 7 VVVTTPPAATAAAPPPAPASPPPPPAP 33
V T PPP P + PPP P
Sbjct: 375 VGTTVTMTGNGTRPPPTPNAEAPPPGP 401
Score = 25.8 bits (55), Expect = 7.7
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 10 TTPPAATAAAPPPAPASPPPPPAP----LSWGTLRRLRGTMVGIFIAPEGTRPALAP 62
T ++ APPP PA PP P +S ++ + M+ + I GT+P P
Sbjct: 412 TNVESSAEGAPPPGPAPPPATSHPRVIRISHQSVEPV--VMMHMNIQDSGTQPGGVP 466
>gi|18375632 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 36.6 bits (83), Expect = 0.004
Identities = 14/19 (73%), Positives = 14/19 (73%)
Query: 15 ATAAAPPPAPASPPPPPAP 33
AT APPP P PPPPPAP
Sbjct: 646 ATQTAPPPPPPPPPPPPAP 664
Score = 30.4 bits (67), Expect = 0.31
Identities = 13/24 (54%), Positives = 13/24 (54%)
Query: 10 TTPPAATAAAPPPAPASPPPPPAP 33
TT A TA P PA PPP P P
Sbjct: 571 TTNTATTAGPAPGGPAQPPPTPQP 594
Score = 26.9 bits (58), Expect = 3.4
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 3 FPEAVVVTTPPAATAAAPPPAPA--SPPPPPAP 33
F +A PP PPPAP + PPP +P
Sbjct: 643 FLQATQTAPPPPPPPPPPPPAPEQQTMPPPGSP 675
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 7 VVVTTPPAATAAAPPPAPASPPPPPAP 33
V T PPP P + PPP P
Sbjct: 375 VGTTVTMTGNGTRPPPTPNAEAPPPGP 401
Score = 25.8 bits (55), Expect = 7.7
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 10 TTPPAATAAAPPPAPASPPPPPAP----LSWGTLRRLRGTMVGIFIAPEGTRPALAP 62
T ++ APPP PA PP P +S ++ + M+ + I GT+P P
Sbjct: 412 TNVESSAEGAPPPGPAPPPATSHPRVIRISHQSVEPV--VMMHMNIQDSGTQPGGVP 466
>gi|18375630 HLA-B associated transcript-3 isoform b [Homo sapiens]
Length = 1126
Score = 36.6 bits (83), Expect = 0.004
Identities = 14/19 (73%), Positives = 14/19 (73%)
Query: 15 ATAAAPPPAPASPPPPPAP 33
AT APPP P PPPPPAP
Sbjct: 646 ATQTAPPPPPPPPPPPPAP 664
Score = 30.4 bits (67), Expect = 0.31
Identities = 13/24 (54%), Positives = 13/24 (54%)
Query: 10 TTPPAATAAAPPPAPASPPPPPAP 33
TT A TA P PA PPP P P
Sbjct: 571 TTNTATTAGPAPGGPAQPPPTPQP 594
Score = 26.9 bits (58), Expect = 3.4
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 3 FPEAVVVTTPPAATAAAPPPAPA--SPPPPPAP 33
F +A PP PPPAP + PPP +P
Sbjct: 643 FLQATQTAPPPPPPPPPPPPAPEQQTMPPPGSP 675
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 7 VVVTTPPAATAAAPPPAPASPPPPPAP 33
V T PPP P + PPP P
Sbjct: 375 VGTTVTMTGNGTRPPPTPNAEAPPPGP 401
Score = 25.8 bits (55), Expect = 7.7
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 10 TTPPAATAAAPPPAPASPPPPPAP----LSWGTLRRLRGTMVGIFIAPEGTRPALAP 62
T ++ APPP PA PP P +S ++ + M+ + I GT+P P
Sbjct: 412 TNVESSAEGAPPPGPAPPPATSHPRVIRISHQSVEPV--VMMHMNIQDSGTQPGGVP 466
>gi|149158692 HLA-B associated transcript-3 isoform a [Homo sapiens]
Length = 1132
Score = 36.6 bits (83), Expect = 0.004
Identities = 14/19 (73%), Positives = 14/19 (73%)
Query: 15 ATAAAPPPAPASPPPPPAP 33
AT APPP P PPPPPAP
Sbjct: 652 ATQTAPPPPPPPPPPPPAP 670
Score = 30.4 bits (67), Expect = 0.31
Identities = 13/24 (54%), Positives = 13/24 (54%)
Query: 10 TTPPAATAAAPPPAPASPPPPPAP 33
TT A TA P PA PPP P P
Sbjct: 577 TTNTATTAGPAPGGPAQPPPTPQP 600
Score = 26.9 bits (58), Expect = 3.4
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 2/33 (6%)
Query: 3 FPEAVVVTTPPAATAAAPPPAPA--SPPPPPAP 33
F +A PP PPPAP + PPP +P
Sbjct: 649 FLQATQTAPPPPPPPPPPPPAPEQQTMPPPGSP 681
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/27 (37%), Positives = 11/27 (40%)
Query: 7 VVVTTPPAATAAAPPPAPASPPPPPAP 33
V T PPP P + PPP P
Sbjct: 381 VGTTVTMTGNGTRPPPTPNAEAPPPGP 407
Score = 25.8 bits (55), Expect = 7.7
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 10 TTPPAATAAAPPPAPASPPPPPAP----LSWGTLRRLRGTMVGIFIAPEGTRPALAP 62
T ++ APPP PA PP P +S ++ + M+ + I GT+P P
Sbjct: 418 TNVESSAEGAPPPGPAPPPATSHPRVIRISHQSVEPV--VMMHMNIQDSGTQPGGVP 472
>gi|224451135 splicing factor, arginine/serine-rich 15 isoform 3
[Homo sapiens]
Length = 1125
Score = 36.6 bits (83), Expect = 0.004
Identities = 17/33 (51%), Positives = 18/33 (54%)
Query: 4 PEAVVVTTPPAATAAAPPPAPASPPPPPAPLSW 36
P A V P A AA PA ASPPPP AP +
Sbjct: 290 PAAAVPPAPTATVPAAAAPAAASPPPPQAPFGF 322
Score = 29.6 bits (65), Expect = 0.53
Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 4 PEAVVVTTPPAATA--AAPPPA--PASPPPPPAP 33
P V PPA T PPP P PPPPP P
Sbjct: 689 PPVVGALQPPAFTPPLGIPPPGFGPGVPPPPPPP 722
Score = 27.7 bits (60), Expect = 2.0
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 17 AAAPPPAPASPPPPPA--PLS-WGTLRRLRGTMVGIFIAPE----GTRPALAPV 63
+A PP AP + P PP P+S GT G ++G+ AP G RP L P+
Sbjct: 785 SAVPPAAPTNLPTPPVTQPVSLLGTQGVAPGPVIGL-QAPSTGLLGARPGLIPL 837
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 11 TPPAATAAAPPPAPASPPPPPAPLS 35
T P + P P P P P PAP++
Sbjct: 652 TEPVSPIPKPLPVPVPPIPVPAPIT 676
>gi|224451133 splicing factor, arginine/serine-rich 15 isoform 2
[Homo sapiens]
Length = 1132
Score = 36.6 bits (83), Expect = 0.004
Identities = 17/33 (51%), Positives = 18/33 (54%)
Query: 4 PEAVVVTTPPAATAAAPPPAPASPPPPPAPLSW 36
P A V P A AA PA ASPPPP AP +
Sbjct: 275 PAAAVPPAPTATVPAAAAPAAASPPPPQAPFGF 307
Score = 29.6 bits (65), Expect = 0.53
Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 4 PEAVVVTTPPAATA--AAPPPA--PASPPPPPAP 33
P V PPA T PPP P PPPPP P
Sbjct: 674 PPVVGALQPPAFTPPLGIPPPGFGPGVPPPPPPP 707
Score = 27.7 bits (60), Expect = 2.0
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 17 AAAPPPAPASPPPPPA--PLS-WGTLRRLRGTMVGIFIAPE----GTRPALAPV 63
+A PP AP + P PP P+S GT G ++G+ AP G RP L P+
Sbjct: 792 SAVPPAAPTNLPTPPVTQPVSLLGTQGVAPGPVIGL-QAPSTGLLGARPGLIPL 844
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 11 TPPAATAAAPPPAPASPPPPPAPLS 35
T P + P P P P P PAP++
Sbjct: 637 TEPVSPIPKPLPVPVPPIPVPAPIT 661
>gi|40789229 splicing factor, arginine/serine-rich 15 isoform 1
[Homo sapiens]
Length = 1147
Score = 36.6 bits (83), Expect = 0.004
Identities = 17/33 (51%), Positives = 18/33 (54%)
Query: 4 PEAVVVTTPPAATAAAPPPAPASPPPPPAPLSW 36
P A V P A AA PA ASPPPP AP +
Sbjct: 290 PAAAVPPAPTATVPAAAAPAAASPPPPQAPFGF 322
Score = 29.6 bits (65), Expect = 0.53
Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 4 PEAVVVTTPPAATA--AAPPPA--PASPPPPPAP 33
P V PPA T PPP P PPPPP P
Sbjct: 689 PPVVGALQPPAFTPPLGIPPPGFGPGVPPPPPPP 722
Score = 27.7 bits (60), Expect = 2.0
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 8/54 (14%)
Query: 17 AAAPPPAPASPPPPPA--PLS-WGTLRRLRGTMVGIFIAPE----GTRPALAPV 63
+A PP AP + P PP P+S GT G ++G+ AP G RP L P+
Sbjct: 807 SAVPPAAPTNLPTPPVTQPVSLLGTQGVAPGPVIGL-QAPSTGLLGARPGLIPL 859
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 11 TPPAATAAAPPPAPASPPPPPAPLS 35
T P + P P P P P PAP++
Sbjct: 652 TEPVSPIPKPLPVPVPPIPVPAPIT 676
>gi|55956904 mitogen-activated protein kinase kinase kinase 4
isoform a [Homo sapiens]
Length = 1608
Score = 36.6 bits (83), Expect = 0.004
Identities = 17/30 (56%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 4 PEAVVVTTPPAATAAAPPPAPASPPPPPAP 33
P A VT PAA PPP P PPPPP P
Sbjct: 11 PPAFAVT--PAAAMEEPPPPPPPPPPPPEP 38
Score = 33.1 bits (74), Expect = 0.048
Identities = 14/29 (48%), Positives = 14/29 (48%)
Query: 5 EAVVVTTPPAATAAAPPPAPASPPPPPAP 33
EA PP A A P A PPPPP P
Sbjct: 3 EAAAALVPPPAFAVTPAAAMEEPPPPPPP 31
>gi|55956902 mitogen-activated protein kinase kinase kinase 4
isoform b [Homo sapiens]
Length = 1558
Score = 36.6 bits (83), Expect = 0.004
Identities = 17/30 (56%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 4 PEAVVVTTPPAATAAAPPPAPASPPPPPAP 33
P A VT PAA PPP P PPPPP P
Sbjct: 11 PPAFAVT--PAAAMEEPPPPPPPPPPPPEP 38
Score = 33.1 bits (74), Expect = 0.048
Identities = 14/29 (48%), Positives = 14/29 (48%)
Query: 5 EAVVVTTPPAATAAAPPPAPASPPPPPAP 33
EA PP A A P A PPPPP P
Sbjct: 3 EAAAALVPPPAFAVTPAAAMEEPPPPPPP 31
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 36.2 bits (82), Expect = 0.006
Identities = 16/21 (76%), Positives = 16/21 (76%), Gaps = 2/21 (9%)
Query: 12 PPAATAAAPPPAPASPPPPPA 32
PP ATAA PPP P PPPPPA
Sbjct: 75 PPPATAAPPPPPP--PPPPPA 93
Score = 32.7 bits (73), Expect = 0.063
Identities = 12/19 (63%), Positives = 12/19 (63%)
Query: 12 PPAATAAAPPPAPASPPPP 30
PP AAPPP P PPPP
Sbjct: 74 PPPPATAAPPPPPPPPPPP 92
Score = 32.0 bits (71), Expect = 0.11
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 5/28 (17%)
Query: 6 AVVVTTPPAATAAAPPPAPASPPPPPAP 33
A+++ PP PPPA A+PPPPP P
Sbjct: 66 ALLLHPPPP-----PPPATAAPPPPPPP 88
Score = 26.2 bits (56), Expect = 5.9
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 12 PPAATAAAPPPAPASPP 28
PP A+AAAP P +PP
Sbjct: 90 PPPASAAAPASGPPAPP 106
>gi|169163027 PREDICTED: similar to Putative acrosin-like protease
[Homo sapiens]
Length = 355
Score = 36.2 bits (82), Expect = 0.006
Identities = 14/23 (60%), Positives = 15/23 (65%)
Query: 12 PPAATAAAPPPAPASPPPPPAPL 34
PPAA PP P PPPPP+PL
Sbjct: 273 PPAAQPRPPPSPPPPPPPPPSPL 295
Score = 34.7 bits (78), Expect = 0.017
Identities = 14/24 (58%), Positives = 15/24 (62%)
Query: 12 PPAATAAAPPPAPASPPPPPAPLS 35
PP AA P P P+ PPPPP P S
Sbjct: 270 PPRPPAAQPRPPPSPPPPPPPPPS 293
Score = 32.0 bits (71), Expect = 0.11
Identities = 13/30 (43%), Positives = 14/30 (46%)
Query: 4 PEAVVVTTPPAATAAAPPPAPASPPPPPAP 33
P A PP+ PPP PPPPP P
Sbjct: 273 PPAAQPRPPPSPPPPPPPPPSPLPPPPPPP 302
Score = 30.4 bits (67), Expect = 0.31
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 12 PPAATAAAPPPAPAS---PPPPPAPLSWGTLRRLRG 44
PP + PPP P+ PPPPP P T + +G
Sbjct: 280 PPPSPPPPPPPPPSPLPPPPPPPPPTPSSTTKLPQG 315
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/22 (45%), Positives = 10/22 (45%)
Query: 12 PPAATAAAPPPAPASPPPPPAP 33
PP PP A PPP P P
Sbjct: 265 PPRPLPPRPPAAQPRPPPSPPP 286
>gi|115430252 serine threonine kinase 39 (STE20/SPS1 homolog,
yeast) [Homo sapiens]
Length = 545
Score = 35.8 bits (81), Expect = 0.007
Identities = 16/28 (57%), Positives = 17/28 (60%)
Query: 6 AVVVTTPPAATAAAPPPAPASPPPPPAP 33
A P AATAA P APA+P P PAP
Sbjct: 22 AAAAAAPAAATAAPAPAAPAAPAPAPAP 49
>gi|122937241 SH3 and multiple ankyrin repeat domains 3 [Homo
sapiens]
Length = 1747
Score = 35.8 bits (81), Expect = 0.007
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 2 RFPEAVVVTTPPAATAAAPPPAPASPPPPPAP 33
RFP + + P PPP +PPPPPAP
Sbjct: 812 RFPRSTSMQDPVREGRGIPPPPQTAPPPPPAP 843
Score = 30.8 bits (68), Expect = 0.24
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 9/38 (23%)
Query: 12 PPAATAAAPPPAP---------ASPPPPPAPLSWGTLR 40
PP TA PPPAP A PPPP ++ T+R
Sbjct: 831 PPPQTAPPPPPAPYYFDSGPPPAFSPPPPPGRAYDTVR 868
Score = 25.8 bits (55), Expect = 7.7
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 11/50 (22%)
Query: 20 PPPAPAS----------PPPPPAPLSWGTLRRLRGTMVG-IFIAPEGTRP 58
PP AP S PP PPAP G R+L + G FIA + P
Sbjct: 451 PPGAPRSCIRIRARFPAPPAPPAPPPRGPKRKLYSAVPGRKFIAVKAHSP 500
Score = 25.8 bits (55), Expect = 7.7
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 6/39 (15%)
Query: 3 FPEAVVVTTPPAATAAAPP--PAPAS----PPPPPAPLS 35
F V++ TP A +P P+PAS PPPAP S
Sbjct: 1329 FANGVLLATPLAGPGPSPTTVPSPASGKPSSEPPPAPES 1367
>gi|154813204 inhibin beta B subunit preproprotein [Homo sapiens]
Length = 407
Score = 35.8 bits (81), Expect = 0.007
Identities = 15/26 (57%), Positives = 17/26 (65%)
Query: 12 PPAATAAAPPPAPASPPPPPAPLSWG 37
P A + PPP PA+PPPPP P S G
Sbjct: 24 PEAWGSPTPPPTPAAPPPPPPPGSPG 49
Score = 28.9 bits (63), Expect = 0.91
Identities = 13/25 (52%), Positives = 13/25 (52%)
Query: 4 PEAVVVTTPPAATAAAPPPAPASPP 28
PEA TPP AA PPP P P
Sbjct: 24 PEAWGSPTPPPTPAAPPPPPPPGSP 48
>gi|153792074 proline rich 12 [Homo sapiens]
Length = 2036
Score = 35.8 bits (81), Expect = 0.007
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 4 PEAVVVTTPP--AATAAAPPPAPASPPPPPA 32
P+ + + PP A T ++PPP P PPPPPA
Sbjct: 1478 PQPALPSPPPLVAPTPSSPPPPPLPPPPPPA 1508
Score = 33.5 bits (75), Expect = 0.037
Identities = 13/22 (59%), Positives = 13/22 (59%)
Query: 12 PPAATAAAPPPAPASPPPPPAP 33
PP PPPA SPPPPP P
Sbjct: 1497 PPPPLPPPPPPAMPSPPPPPPP 1518
Score = 33.1 bits (74), Expect = 0.048
Identities = 20/51 (39%), Positives = 21/51 (41%), Gaps = 7/51 (13%)
Query: 13 PAATAAAP-PPAPASPPPPPAPLSWGTLRRLRGTMVGIFIAPEGTRPALAP 62
PA AP PP P PPPPP PL R G + P P L P
Sbjct: 826 PATRDGAPQPPPPPPPPPPPMPLQLEAHLRSHG------LEPAAPSPRLRP 870
Score = 32.3 bits (72), Expect = 0.082
Identities = 12/22 (54%), Positives = 12/22 (54%)
Query: 12 PPAATAAAPPPAPASPPPPPAP 33
PP AP P P PPPPP P
Sbjct: 1457 PPPTPPPAPTPQPQPPPPPPPP 1478
Score = 32.3 bits (72), Expect = 0.082
Identities = 15/32 (46%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 4 PEAVVVTTP--PAATAAAPPPAPASPPPPPAP 33
P +V TP P PPP PA P PPP P
Sbjct: 1485 PPPLVAPTPSSPPPPPLPPPPPPAMPSPPPPP 1516
Score = 32.0 bits (71), Expect = 0.11
Identities = 14/18 (77%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Query: 18 AAPPPAPASPPPPPAPLS 35
AAPPP P PPPPPAP S
Sbjct: 1037 AAPPPPPP-PPPPPAPAS 1053
Score = 31.6 bits (70), Expect = 0.14
Identities = 14/24 (58%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Query: 10 TTPPAATAAAPPPAPASPPPPPAP 33
T PPA T P P P PPPPP P
Sbjct: 1460 TPPPAPT---PQPQPPPPPPPPQP 1480
Score = 30.4 bits (67), Expect = 0.31
Identities = 12/22 (54%), Positives = 12/22 (54%)
Query: 11 TPPAATAAAPPPAPASPPPPPA 32
TPP A P P P PPP PA
Sbjct: 1460 TPPPAPTPQPQPPPPPPPPQPA 1481
Score = 28.9 bits (63), Expect = 0.91
Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 6/33 (18%)
Query: 4 PEAVVVTTPPAATAAAPPPAPA---SPPPPPAP 33
PE ++ P T PPPAP PPPPP P
Sbjct: 1448 PEPPLLEEKPPPT---PPPAPTPQPQPPPPPPP 1477
Score = 27.7 bits (60), Expect = 2.0
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 4 PEAVVVTTPPAATAAAPPPAPASPPPPPA 32
P++V + P PP PA P PPP+
Sbjct: 1310 PKSVPPSVPARGLQPQPPATPAVPHPPPS 1338
Score = 27.7 bits (60), Expect = 2.0
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 4 PEAVVVTTPPAATAAAPPPAPASPPPPPAP 33
P A+ PP AAAP AP P P+P
Sbjct: 1506 PPAMPSPPPPPPPAAAPLAAPPEEPAAPSP 1535
Score = 27.3 bits (59), Expect = 2.6
Identities = 13/28 (46%), Positives = 13/28 (46%), Gaps = 6/28 (21%)
Query: 12 PPAATAAAPPPAPA------SPPPPPAP 33
PP A P P P SPPPPP P
Sbjct: 1475 PPPPQPALPSPPPLVAPTPSSPPPPPLP 1502
Score = 27.3 bits (59), Expect = 2.6
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 4 PEAVVVTTPPAATAAAPPPAPASPPPPPAP 33
P + +PP A P P P PPP P
Sbjct: 1477 PPQPALPSPPPLVAPTPSSPPPPPLPPPPP 1506
Score = 26.9 bits (58), Expect = 3.4
Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Query: 12 PPAATAAAPPP--APASPPPPPAPL 34
PP +PPP AP PPP PL
Sbjct: 1477 PPQPALPSPPPLVAPTPSSPPPPPL 1501
Score = 26.9 bits (58), Expect = 3.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 16 TAAAPPPAPASPPPPPAP 33
++A PP APA PP P P
Sbjct: 1689 SSAPPPKAPAPPPKPETP 1706
Score = 26.6 bits (57), Expect = 4.5
Identities = 15/44 (34%), Positives = 17/44 (38%)
Query: 17 AAAPPPAPASPPPPPAPLSWGTLRRLRGTMVGIFIAPEGTRPAL 60
A PP P P PPP P T L + A E + P L
Sbjct: 222 AQTPPYRPGPPDPPPPPRHLPTQFNLLASSSAAAAAAEQSSPQL 265
Score = 26.2 bits (56), Expect = 5.9
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
Query: 12 PPAATAAAPPPAPASPPPPPAPLS 35
PP A + PPP PPP APL+
Sbjct: 1505 PPPAMPSPPPP----PPPAAAPLA 1524
Score = 25.8 bits (55), Expect = 7.7
Identities = 9/12 (75%), Positives = 9/12 (75%)
Query: 22 PAPASPPPPPAP 33
PA A PPPPP P
Sbjct: 295 PASAQPPPPPPP 306
>gi|4507691 transformation/transcription domain-associated protein
[Homo sapiens]
Length = 3830
Score = 35.4 bits (80), Expect = 0.010
Identities = 15/25 (60%), Positives = 15/25 (60%)
Query: 9 VTTPPAATAAAPPPAPASPPPPPAP 33
V T PAA AP PAP PPPP P
Sbjct: 487 VPTAPAAPGPAPSPAPVPAPPPPPP 511
Score = 32.7 bits (73), Expect = 0.063
Identities = 13/22 (59%), Positives = 14/22 (63%)
Query: 12 PPAATAAAPPPAPASPPPPPAP 33
P A + AP PAP PPPPP P
Sbjct: 494 PGPAPSPAPVPAPPPPPPPPPP 515
Score = 32.0 bits (71), Expect = 0.11
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 5 EAVVVTTPPAATAAAPPPAPA---SPPPPPAP 33
EA + P A A P P+PA +PPPPP P
Sbjct: 481 EAALPGVPTAPAAPGPAPSPAPVPAPPPPPPP 512
Score = 28.9 bits (63), Expect = 0.91
Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 4 PEAVVVTTPPAATAAAPPPAPASPPPPPAPLS 35
P A PA A PPP P PPPP P++
Sbjct: 491 PAAPGPAPSPAPVPAPPPPPP--PPPPATPVT 520
Score = 26.9 bits (58), Expect = 3.4
Identities = 17/29 (58%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Query: 6 AVVVTTPPAATA-AAPPPAPASPPPPPAP 33
AV P TA AAP PAP SP P PAP
Sbjct: 479 AVEAALPGVPTAPAAPGPAP-SPAPVPAP 506
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.136 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,834,326
Number of Sequences: 37866
Number of extensions: 316872
Number of successful extensions: 19877
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 325
Number of HSP's that attempted gapping in prelim test: 7874
Number of HSP's gapped (non-prelim): 8325
length of query: 72
length of database: 18,247,518
effective HSP length: 45
effective length of query: 27
effective length of database: 16,543,548
effective search space: 446675796
effective search space used: 446675796
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.