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Search of human proteins with 239750950
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239750950 PREDICTED: hypothetical protein XP_002347615 [Homo
sapiens]
(155 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756447 PREDICTED: hypothetical protein [Homo sapiens] 326 6e-90
gi|239750950 PREDICTED: hypothetical protein XP_002347615 [Homo ... 326 6e-90
gi|239745356 PREDICTED: hypothetical protein XP_002343445 [Homo ... 326 6e-90
gi|113865921 hypothetical protein LOC441457 [Homo sapiens] 33 0.098
gi|169201839 PREDICTED: similar to hCG2038970 [Homo sapiens] 32 0.29
gi|169201482 PREDICTED: similar to hCG2038970 [Homo sapiens] 32 0.29
gi|239744229 PREDICTED: similar to hCG2038970 [Homo sapiens] 32 0.29
gi|167614488 TBC1 domain family, member 10B [Homo sapiens] 30 0.64
gi|210147475 zinc finger protein 92 homolog [Homo sapiens] 30 0.64
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 30 0.83
gi|148806874 hypothetical protein LOC54754 [Homo sapiens] 30 0.83
gi|239754911 PREDICTED: hypothetical protein [Homo sapiens] 29 1.4
gi|239749451 PREDICTED: hypothetical protein [Homo sapiens] 29 1.4
gi|239743581 PREDICTED: hypothetical protein [Homo sapiens] 29 1.4
gi|207452735 epiplakin 1 [Homo sapiens] 29 1.4
gi|28269707 C-type lectin domain family 14, member A [Homo sapiens] 29 1.4
gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 28 3.2
gi|239745981 PREDICTED: hypothetical protein XP_002343632 [Homo ... 28 3.2
gi|76443679 proprotein convertase subtilisin/kexin type 4 [Homo ... 28 3.2
gi|239757230 PREDICTED: hypothetical protein [Homo sapiens] 28 4.1
gi|239751738 PREDICTED: hypothetical protein [Homo sapiens] 28 4.1
gi|239746239 PREDICTED: hypothetical protein XP_002343711 [Homo ... 28 4.1
gi|23065526 growth arrest-specific 2 like 1 isoform a [Homo sapi... 28 4.1
gi|19923777 growth arrest-specific 2 like 1 isoform a [Homo sapi... 28 4.1
gi|32698692 zinc finger, DHHC domain containing 8 [Homo sapiens] 28 4.1
gi|151301175 hypothetical protein LOC58489 [Homo sapiens] 28 4.1
gi|4885327 free fatty acid receptor 1 [Homo sapiens] 27 5.4
gi|156546910 BRAF35/HDAC2 complex isoform b [Homo sapiens] 27 5.4
gi|156546894 BRAF35/HDAC2 complex isoform a [Homo sapiens] 27 5.4
gi|30039694 zinc finger protein 598 [Homo sapiens] 27 5.4
>gi|239756447 PREDICTED: hypothetical protein [Homo sapiens]
Length = 155
Score = 326 bits (835), Expect = 6e-90
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 MELRSGAAYSAQRMAGLVLPDFRYGLLLGLDVWASWLDHQWLKQTLALLSSGPAQLVLAA 60
MELRSGAAYSAQRMAGLVLPDFRYGLLLGLDVWASWLDHQWLKQTLALLSSGPAQLVLAA
Sbjct: 1 MELRSGAAYSAQRMAGLVLPDFRYGLLLGLDVWASWLDHQWLKQTLALLSSGPAQLVLAA 60
Query: 61 CSGPQRWGAAFGSLCELGLCPSPHGASLPSTALTLTQLVLAARSSTGAYALRLCTGPPAP 120
CSGPQRWGAAFGSLCELGLCPSPHGASLPSTALTLTQLVLAARSSTGAYALRLCTGPPAP
Sbjct: 61 CSGPQRWGAAFGSLCELGLCPSPHGASLPSTALTLTQLVLAARSSTGAYALRLCTGPPAP 120
Query: 121 RPASLACVSDCAEGHWEKPGQDAGCTDDGDHTGLP 155
RPASLACVSDCAEGHWEKPGQDAGCTDDGDHTGLP
Sbjct: 121 RPASLACVSDCAEGHWEKPGQDAGCTDDGDHTGLP 155
>gi|239750950 PREDICTED: hypothetical protein XP_002347615 [Homo
sapiens]
Length = 155
Score = 326 bits (835), Expect = 6e-90
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 MELRSGAAYSAQRMAGLVLPDFRYGLLLGLDVWASWLDHQWLKQTLALLSSGPAQLVLAA 60
MELRSGAAYSAQRMAGLVLPDFRYGLLLGLDVWASWLDHQWLKQTLALLSSGPAQLVLAA
Sbjct: 1 MELRSGAAYSAQRMAGLVLPDFRYGLLLGLDVWASWLDHQWLKQTLALLSSGPAQLVLAA 60
Query: 61 CSGPQRWGAAFGSLCELGLCPSPHGASLPSTALTLTQLVLAARSSTGAYALRLCTGPPAP 120
CSGPQRWGAAFGSLCELGLCPSPHGASLPSTALTLTQLVLAARSSTGAYALRLCTGPPAP
Sbjct: 61 CSGPQRWGAAFGSLCELGLCPSPHGASLPSTALTLTQLVLAARSSTGAYALRLCTGPPAP 120
Query: 121 RPASLACVSDCAEGHWEKPGQDAGCTDDGDHTGLP 155
RPASLACVSDCAEGHWEKPGQDAGCTDDGDHTGLP
Sbjct: 121 RPASLACVSDCAEGHWEKPGQDAGCTDDGDHTGLP 155
>gi|239745356 PREDICTED: hypothetical protein XP_002343445 [Homo
sapiens]
Length = 155
Score = 326 bits (835), Expect = 6e-90
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 MELRSGAAYSAQRMAGLVLPDFRYGLLLGLDVWASWLDHQWLKQTLALLSSGPAQLVLAA 60
MELRSGAAYSAQRMAGLVLPDFRYGLLLGLDVWASWLDHQWLKQTLALLSSGPAQLVLAA
Sbjct: 1 MELRSGAAYSAQRMAGLVLPDFRYGLLLGLDVWASWLDHQWLKQTLALLSSGPAQLVLAA 60
Query: 61 CSGPQRWGAAFGSLCELGLCPSPHGASLPSTALTLTQLVLAARSSTGAYALRLCTGPPAP 120
CSGPQRWGAAFGSLCELGLCPSPHGASLPSTALTLTQLVLAARSSTGAYALRLCTGPPAP
Sbjct: 61 CSGPQRWGAAFGSLCELGLCPSPHGASLPSTALTLTQLVLAARSSTGAYALRLCTGPPAP 120
Query: 121 RPASLACVSDCAEGHWEKPGQDAGCTDDGDHTGLP 155
RPASLACVSDCAEGHWEKPGQDAGCTDDGDHTGLP
Sbjct: 121 RPASLACVSDCAEGHWEKPGQDAGCTDDGDHTGLP 155
>gi|113865921 hypothetical protein LOC441457 [Homo sapiens]
Length = 492
Score = 33.1 bits (74), Expect = 0.098
Identities = 26/93 (27%), Positives = 36/93 (38%), Gaps = 2/93 (2%)
Query: 53 PAQLVLAACSGPQRWGAAFGSLCELGLCPSPHG-ASLPSTALTLTQLVLAARSSTGAYAL 111
P L P W A G+LC +CP P A+ P +T Q+V ++ G ++
Sbjct: 95 PQAQTLILTQAPLVWQAP-GTLCGGVMCPPPLLLAAAPGVPVTSAQVVGGTQACEGGWSH 153
Query: 112 RLCTGPPAPRPASLACVSDCAEGHWEKPGQDAG 144
L PP P VS G W + G
Sbjct: 154 GLPLPPPPPAAQVAPIVSPGNAGPWPQGAHGEG 186
>gi|169201839 PREDICTED: similar to hCG2038970 [Homo sapiens]
Length = 915
Score = 31.6 bits (70), Expect = 0.29
Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 14/111 (12%)
Query: 38 DHQWLKQTLALLSSGPAQLVLAACSGPQRWGAAFGSLCELGLCPS---PHGASLPSTALT 94
D W + + GP +++L+ G WG C L CPS P G SL
Sbjct: 394 DVMWSASQIPNTTGGPVRILLSL-QGVAYWGVP--PRCGLLGCPSKVWPAGVSLQGGH-- 448
Query: 95 LTQLVLAARSST---GAYALRLCTGPP-APRPASLACVSDCAEGHWEK-PG 140
TQ V+ S G LR C P + R +++ +S+ +GHW + PG
Sbjct: 449 -TQHVVCRGHSELNWGNKGLRNCGEKPLSQRTCTVSMLSEPPQGHWRRQPG 498
>gi|169201482 PREDICTED: similar to hCG2038970 [Homo sapiens]
Length = 821
Score = 31.6 bits (70), Expect = 0.29
Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 14/111 (12%)
Query: 38 DHQWLKQTLALLSSGPAQLVLAACSGPQRWGAAFGSLCELGLCPS---PHGASLPSTALT 94
D W + + GP +++L+ G WG C L CPS P G SL
Sbjct: 394 DVMWSASQIPNTTGGPVRILLSL-QGVAYWGVP--PRCGLLGCPSKVWPAGVSLQGGH-- 448
Query: 95 LTQLVLAARSST---GAYALRLCTGPP-APRPASLACVSDCAEGHWEK-PG 140
TQ V+ S G LR C P + R +++ +S+ +GHW + PG
Sbjct: 449 -TQHVVCRGHSELNWGNKGLRNCGEKPLSQRTCTVSMLSEPPQGHWRRQPG 498
>gi|239744229 PREDICTED: similar to hCG2038970 [Homo sapiens]
Length = 904
Score = 31.6 bits (70), Expect = 0.29
Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 14/111 (12%)
Query: 38 DHQWLKQTLALLSSGPAQLVLAACSGPQRWGAAFGSLCELGLCPS---PHGASLPSTALT 94
D W + + GP +++L+ G WG C L CPS P G SL
Sbjct: 394 DVMWSASQIPNTTGGPVRILLSL-QGVAYWGVP--PRCGLLGCPSKVWPAGVSLQGGH-- 448
Query: 95 LTQLVLAARSST---GAYALRLCTGPP-APRPASLACVSDCAEGHWEK-PG 140
TQ V+ S G LR C P + R +++ +S+ +GHW + PG
Sbjct: 449 -TQHVVCRGHSELNWGNKGLRNCGEKPLSQRTCTVSMLSEPPQGHWRRQPG 498
>gi|167614488 TBC1 domain family, member 10B [Homo sapiens]
Length = 808
Score = 30.4 bits (67), Expect = 0.64
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 81 PSPHGASLPSTALT-LTQLVLAARSSTGAYALRLCTGPPAPRPASLACV 128
P+P A P+ A+T T +VL +S A +L +GP +P PA++A V
Sbjct: 72 PAPAPAPAPAPAVTGSTVVVLTLEASPEAPKPQLPSGPESPEPAAVAGV 120
>gi|210147475 zinc finger protein 92 homolog [Homo sapiens]
Length = 416
Score = 30.4 bits (67), Expect = 0.64
Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 68 GAAFGSLCELGLCPSPHGASLPSTALTLTQLVLAARSSTGAYALRLCTGPPAPRPAS 124
G AFG L + HGA P+ A T + LA STG + T PP P A+
Sbjct: 354 GKAFGRRANLFKHQAVHGARRPAKAETARR--LAGPGSTGPGSAVAATSPPRPSTAA 408
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 30.0 bits (66), Expect = 0.83
Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 6/89 (6%)
Query: 30 LDVWASWLDHQWLKQTLALLSSGPAQLVLAACSGPQRWGAAFGSLCELGLCPSPHGASLP 89
LD + ++LD Q + P QL+ + + GA+ G L P P G
Sbjct: 1725 LDTYVAYLDGQAFGGSSTPGPPYPPQLMTPSKLRGRALGASGG------LRPGPSGGLRD 1778
Query: 90 STALTLTQLVLAARSSTGAYALRLCTGPP 118
T + + + G ALR C+GPP
Sbjct: 1779 PVTPTSPTVSVTGAGTDGLLALRACSGPP 1807
Score = 26.9 bits (58), Expect = 7.0
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 56 LVLAACSGPQRWGAAFGSLC---ELGLCPSPHGASLPSTAL 93
L L ACSGP G A G + E+ P P +SLP L
Sbjct: 1798 LALRACSGPPTAGVAGGPVAVEPEVPPVPLPTASSLPRKLL 1838
>gi|148806874 hypothetical protein LOC54754 [Homo sapiens]
Length = 756
Score = 30.0 bits (66), Expect = 0.83
Identities = 25/93 (26%), Positives = 35/93 (37%), Gaps = 2/93 (2%)
Query: 53 PAQLVLAACSGPQRWGAAFGSLCELGLCPSPHG-ASLPSTALTLTQLVLAARSSTGAYAL 111
P L P W A G+LC +CP P A+ P +T Q+V ++ G ++
Sbjct: 95 PQAQTLILTQAPLVWQAP-GTLCGGVMCPPPLLLAAAPGVPVTSAQVVGGTQACEGGWSH 153
Query: 112 RLCTGPPAPRPASLACVSDCAEGHWEKPGQDAG 144
L PP P VS W + G
Sbjct: 154 GLPLPPPPPAAQVAPIVSPGNARPWPQGAHGEG 186
>gi|239754911 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 29.3 bits (64), Expect = 1.4
Identities = 31/100 (31%), Positives = 36/100 (36%), Gaps = 18/100 (18%)
Query: 50 SSGPAQLVLAACSGPQ--RWGAAFGSLCELGLCPSPHGASL---PSTALTLTQLVLAARS 104
S PA A SG RW + + C L L P P GAS P L A S
Sbjct: 69 SGPPATAAAARASGHAHGRWPRSAATACTLRLSPWPGGASCHHRPRYHLRRRPQPHGAAS 128
Query: 105 STGAYALRLC---TGPP---APRPASLACVSDCAEGHWEK 138
S RLC + PP P P +C HW +
Sbjct: 129 SCSLPRCRLCPERSAPPRRRGPPPLPTSC-------HWAR 161
>gi|239749451 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 29.3 bits (64), Expect = 1.4
Identities = 31/100 (31%), Positives = 36/100 (36%), Gaps = 18/100 (18%)
Query: 50 SSGPAQLVLAACSGPQ--RWGAAFGSLCELGLCPSPHGASL---PSTALTLTQLVLAARS 104
S PA A SG RW + + C L L P P GAS P L A S
Sbjct: 69 SGPPATAAAARASGHAHGRWPRSAATACTLRLSPWPGGASCHHRPRYHLRRRPQPHGAAS 128
Query: 105 STGAYALRLC---TGPP---APRPASLACVSDCAEGHWEK 138
S RLC + PP P P +C HW +
Sbjct: 129 SCSLPRCRLCPERSAPPRRRGPPPLPTSC-------HWAR 161
>gi|239743581 PREDICTED: hypothetical protein [Homo sapiens]
Length = 297
Score = 29.3 bits (64), Expect = 1.4
Identities = 31/100 (31%), Positives = 36/100 (36%), Gaps = 18/100 (18%)
Query: 50 SSGPAQLVLAACSGPQ--RWGAAFGSLCELGLCPSPHGASL---PSTALTLTQLVLAARS 104
S PA A SG RW + + C L L P P GAS P L A S
Sbjct: 69 SGPPATAAAARASGHAHGRWPRSAATACTLRLSPWPGGASCHHRPRYHLRRRPQPHGAAS 128
Query: 105 STGAYALRLC---TGPP---APRPASLACVSDCAEGHWEK 138
S RLC + PP P P +C HW +
Sbjct: 129 SCSLPRCRLCPERSAPPRRRGPPPLPTSC-------HWAR 161
>gi|207452735 epiplakin 1 [Homo sapiens]
Length = 5090
Score = 29.3 bits (64), Expect = 1.4
Identities = 32/106 (30%), Positives = 48/106 (45%), Gaps = 17/106 (16%)
Query: 12 QRMAGLVLPDFRYGLLLGLDVWASWLDHQWLKQTLALLSSGPAQLVLAACSGPQRWGAAF 71
QR A ++LP R + + + A +D Q L Q LA S A L++ G +R+
Sbjct: 873 QRQADIMLPALRSRVTVHQLLEAGIIDQQLLDQVLAGTISPEALLLM---DGVRRYLCGL 929
Query: 72 GSLCELGLCPSPHGASL----------PSTALTLTQLVLAARSSTG 107
G++ + L PS SL P AL L L A+++TG
Sbjct: 930 GAVGGVRLLPSGQRLSLYQAMRQKLLGPRVALAL----LEAQAATG 971
>gi|28269707 C-type lectin domain family 14, member A [Homo sapiens]
Length = 490
Score = 29.3 bits (64), Expect = 1.4
Identities = 28/86 (32%), Positives = 36/86 (41%), Gaps = 9/86 (10%)
Query: 70 AFGSLCELG---LCPSPH-GASLPSTALTLTQLVLAAR--SSTGAYALRLCTGPPAPRPA 123
A G LC+ LCP+P GA+ + QL AA S G LC G P
Sbjct: 166 ANGYLCKYQFEVLCPAPRPGAASNLSYRAPFQLHSAALDFSPPGTEVSALCRGQ---LPI 222
Query: 124 SLACVSDCAEGHWEKPGQDAGCTDDG 149
S+ C++D W+K D C G
Sbjct: 223 SVTCIADEIGARWDKLSGDVLCPCPG 248
>gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2790
Score = 28.1 bits (61), Expect = 3.2
Identities = 22/47 (46%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Query: 46 LALLSSGPAQLVLAACSGPQRWGAAFGSLCELGLCPSP-HGA-SLPS 90
+ LL GPA+L AA S P A S G PSP H A SLPS
Sbjct: 63 ILLLIVGPARLPGAAPSTPPSTMATLNSASTTGTTPSPGHNAPSLPS 109
>gi|239745981 PREDICTED: hypothetical protein XP_002343632 [Homo
sapiens]
Length = 474
Score = 28.1 bits (61), Expect = 3.2
Identities = 19/78 (24%), Positives = 32/78 (41%)
Query: 52 GPAQLVLAACSGPQRWGAAFGSLCELGLCPSPHGASLPSTALTLTQLVLAARSSTGAYAL 111
GPA + + +R G G LC+ +C + A++ ++ L A G +
Sbjct: 74 GPAGIRVRVLCAGRRSGRLCGHLCQSAVCRATLRAAVWASVLAFCVPGDAQGGRAGIHVR 133
Query: 112 RLCTGPPAPRPASLACVS 129
LC G + +P C S
Sbjct: 134 VLCAGRRSGQPCRHPCQS 151
>gi|76443679 proprotein convertase subtilisin/kexin type 4 [Homo
sapiens]
Length = 755
Score = 28.1 bits (61), Expect = 3.2
Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 10/78 (12%)
Query: 48 LLSSGPAQLVLAACSGPQRWGAAFGSLCELGLCPSPHG----------ASLPSTALTLTQ 97
LL G A+ + A +GPQ +A GLC + G A P T+
Sbjct: 573 LLLYGTAEDMTARPTGPQVTSSACVQRDTEGLCQACDGPAYILGQLCLAYCPPRFFNHTR 632
Query: 98 LVLAARSSTGAYALRLCT 115
LV A T A ALR+C+
Sbjct: 633 LVTAGPGHTAAPALRVCS 650
>gi|239757230 PREDICTED: hypothetical protein [Homo sapiens]
Length = 144
Score = 27.7 bits (60), Expect = 4.1
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 81 PSPHGASLPST---ALTLTQLVLAARSSTGAYALRLCTGPPAPRPAS 124
P P AS P++ T+T+ +ARS+ A GP AP P S
Sbjct: 37 PEPTQASQPASQRGGATVTKPAASARSAAAATGFPCSPGPRAPPPPS 83
>gi|239751738 PREDICTED: hypothetical protein [Homo sapiens]
Length = 144
Score = 27.7 bits (60), Expect = 4.1
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 81 PSPHGASLPST---ALTLTQLVLAARSSTGAYALRLCTGPPAPRPAS 124
P P AS P++ T+T+ +ARS+ A GP AP P S
Sbjct: 37 PEPTQASQPASQRGGATVTKPAASARSAAAATGFPCSPGPRAPPPPS 83
>gi|239746239 PREDICTED: hypothetical protein XP_002343711 [Homo
sapiens]
Length = 144
Score = 27.7 bits (60), Expect = 4.1
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 81 PSPHGASLPST---ALTLTQLVLAARSSTGAYALRLCTGPPAPRPAS 124
P P AS P++ T+T+ +ARS+ A GP AP P S
Sbjct: 37 PEPTQASQPASQRGGATVTKPAASARSAAAATGFPCSPGPRAPPPPS 83
>gi|23065526 growth arrest-specific 2 like 1 isoform a [Homo
sapiens]
Length = 681
Score = 27.7 bits (60), Expect = 4.1
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 81 PSPHGASLPSTALTLTQLVLAARSSTGAYALRLCTGPPAPRPASLACVSDCAE------G 134
P+P A S++ + + VL + + R G P PR +L+ SD G
Sbjct: 554 PAPDSAYCSSSSSSSSLSVLGGKCGQPGDSGRTANGLPGPRSQALSSSSDEGSPCPGMGG 613
Query: 135 HWEKPGQDAGCTD 147
+ PG CT+
Sbjct: 614 PLDAPGSPLACTE 626
>gi|19923777 growth arrest-specific 2 like 1 isoform a [Homo
sapiens]
Length = 681
Score = 27.7 bits (60), Expect = 4.1
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 81 PSPHGASLPSTALTLTQLVLAARSSTGAYALRLCTGPPAPRPASLACVSDCAE------G 134
P+P A S++ + + VL + + R G P PR +L+ SD G
Sbjct: 554 PAPDSAYCSSSSSSSSLSVLGGKCGQPGDSGRTANGLPGPRSQALSSSSDEGSPCPGMGG 613
Query: 135 HWEKPGQDAGCTD 147
+ PG CT+
Sbjct: 614 PLDAPGSPLACTE 626
>gi|32698692 zinc finger, DHHC domain containing 8 [Homo sapiens]
Length = 765
Score = 27.7 bits (60), Expect = 4.1
Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 5/96 (5%)
Query: 50 SSGPAQLVLAACSGPQRWGAAFGSLCELGLCPSPHGASLPSTALTLTQLVLAAR-----S 104
SS Q GP+ +GS +L P GA P+ +L+ L + S
Sbjct: 583 SSYSLQQASVLSEGPRGPALRYGSRDDLVAGPGFGGARNPALQTSLSSLSSSVSRAPRTS 642
Query: 105 STGAYALRLCTGPPAPRPASLACVSDCAEGHWEKPG 140
S+ A + + P PRP+S + S +G PG
Sbjct: 643 SSSLQADQASSNAPGPRPSSGSHRSPARQGLPSPPG 678
>gi|151301175 hypothetical protein LOC58489 [Homo sapiens]
Length = 329
Score = 27.7 bits (60), Expect = 4.1
Identities = 27/85 (31%), Positives = 34/85 (40%), Gaps = 11/85 (12%)
Query: 63 GPQRWGAAFGSLCELGL---CPSPHGASLPSTALTLTQLVLAARSSTGAYALRLCTGPPA 119
GP+ G + G LC L CPS A L T VLA GA G A
Sbjct: 5 GPRMNGFSLGELCWLFCCPPCPSRIAAKLAFLPPEPTYTVLAP-EQRGA-------GASA 56
Query: 120 PRPASLACVSDCAEGHWEKPGQDAG 144
P PA + A+ ++P + AG
Sbjct: 57 PAPAQATAAAAAAQPAPQQPEEGAG 81
>gi|4885327 free fatty acid receptor 1 [Homo sapiens]
Length = 300
Score = 27.3 bits (59), Expect = 5.4
Identities = 29/101 (28%), Positives = 42/101 (41%), Gaps = 8/101 (7%)
Query: 25 GLLLGLDVWASWLDHQWLKQTLALLSSGPAQLVLA---ACSGPQRWGAA----FGSLCEL 77
GL+ GL+ WLDH + +G + A A +GP R+ + F L
Sbjct: 139 GLVFGLEAPGGWLDHSNTSLGINTPVNGSPVCLEAWDPASAGPARFSLSLLLFFLPLAIT 198
Query: 78 GLCPSPHGASLPSTALTLTQLVLAARSSTGA-YALRLCTGP 117
C +L + LT + + AA + GA L LC GP
Sbjct: 199 AFCYVGCLRALARSGLTHRRKLRAAWVAGGALLTLLLCVGP 239
>gi|156546910 BRAF35/HDAC2 complex isoform b [Homo sapiens]
Length = 634
Score = 27.3 bits (59), Expect = 5.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 115 TGPPAPRPASLACVSDCAEGHWEK 138
T PAP P+S +C ++C +G K
Sbjct: 611 TSTPAPSPSSQSCTANCNQGEETK 634
>gi|156546894 BRAF35/HDAC2 complex isoform a [Homo sapiens]
Length = 680
Score = 27.3 bits (59), Expect = 5.4
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 115 TGPPAPRPASLACVSDCAEGHWEK 138
T PAP P+S +C ++C +G K
Sbjct: 657 TSTPAPSPSSQSCTANCNQGEETK 680
>gi|30039694 zinc finger protein 598 [Homo sapiens]
Length = 904
Score = 27.3 bits (59), Expect = 5.4
Identities = 12/19 (63%), Positives = 13/19 (68%)
Query: 78 GLCPSPHGASLPSTALTLT 96
GL PSPH A +PS A T T
Sbjct: 716 GLLPSPHPACVPSPATTTT 734
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.134 0.444
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,458,683
Number of Sequences: 37866
Number of extensions: 367137
Number of successful extensions: 1090
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 30
Number of HSP's that attempted gapping in prelim test: 1071
Number of HSP's gapped (non-prelim): 49
length of query: 155
length of database: 18,247,518
effective HSP length: 93
effective length of query: 62
effective length of database: 14,725,980
effective search space: 913010760
effective search space used: 913010760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.